Items where Author is "Varshney, R K"

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Rezaei, M K and Deokar, A A and Arganosa, G and Roorkiwal, M and Pandey, S K and Warkentin, T D and Varshney, R K and Tar′an, B (2019) Mapping Quantitative Trait Loci for Carotenoid Concentration in Three F2 Populations of Chickpea. The Plant Genome (TSI), 12 (3). pp. 1-12. ISSN 1940-3372

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Choudhary, M and Wani, S H and Kumar, P and Bagaria, P K and Rakshit, S and Roorkiwal, M and Varshney, R K (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics (TSI), 19 (5). pp. 685-701. ISSN 1438-793X

Varshney, R K and Ojiewo, C O and Monyo, E (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market-demand to benefit smallholder farmers and empowerment of national programmes in sub-Saharan Africa and South Asia. Plant Breeding (TSI), 138 (4). pp. 379-388. ISSN 01799541

Luo, H and Pandey, M K and Khan, A W and Guo, J and Wu, B and Cai, Y and Huang, L and Zhou, X and Chen, Y and Chen, W and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (7). pp. 1248-1260. ISSN 1467-7644

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Pandey, A K and Varshney, R K and Sudini, H K and Pandey, M K (2019) An Improved Enzyme-Linked Immunosorbent Assay (ELISA) Based Protocol Using Seeds for Detection of Five Major Peanut Allergens Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8. Frontiers in Nutrition (TSI), 6 (68). pp. 1-11. ISSN 2296-861X

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Gumma, M K and Tsusaka, T W and Mohammed, I and Chavula, G and Ganga Rao, N V P R and Okori, P and Ojiewo, C O and Varshney, R K and Siambi, M and Whitbread, A M (2019) Monitoring Changes in the Cultivation of Pigeonpea and Groundnut in Malawi Using Time Series Satellite Imagery for Sustainable Food Systems. Remote Sensing (TSI), 11(12) (1475). pp. 1-23. ISSN 2072-4292

Saxena, K B and Choudhary, A K and Srivastava, R K and Bohra, A and Saxena, R K and Varshney, R K (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding (TSI), 138 (3). pp. 243-251. ISSN 0179-9541

Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644

Sachdeva, S and Bharadwaj, C and Singh, S and Roorkiwal, M and Sharma, V and Singh, A and Varshney, R K (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences (TSI), 89 (5). pp. 834-841. ISSN 0019-5022

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Dodia, S M and Joshi, B and Gangurde, S S and Thirumalaisamy, P P and Mishra, G P and Narandrakumar, D and Soni, P and Rathnakumar, A L and Dobaria, J R and Sangh, C and Chitikineni, A and Chanda, S V and Pandey, M K and Varshney, R K and Thankappan, R (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics (TSI), 132 (4). pp. 1001-1016. ISSN 0040-5752

Divya, C and Gaurav, A and Hui, W and Pandey, M K and Culbreath, A K and Varshney, R K and Guo, B (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144. ISSN 0250-5371

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Yadav, P and Saxena, K B and Hingane, A J and Sameer Kumar, C V and Kandalkar, V S and Varshney, R K and Saxena, R K (2019) An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea. BMC Genomics (TSI), 20 (1). pp. 1-10. ISSN 1471-2164

Yu, B and Huai, D and Huang, L and Kang, Y and Ren, X and Chen, Y and Zhou, X and Luo, H and Liu, N and Chen, W and Lei, Y and Pandey, M K and Sudini, H and Varshney, R K and Liao, B and Jiang, H (2019) Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.). BMC Genetics (TSI), 20 (1). pp. 1-13. ISSN 1471-2156

Jain, A and Roorkiwal, M and Kale, S and Garg, V and Yadala, R and Varshney, R K (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE (TSI), 14 (3). pp. 1-13. ISSN 1932-6203

Godwin, I D and Rutkoski, J and Varshney, R K and Hickey, L T (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics (TSI), 132 (3). pp. 555-557. ISSN 0040-5752

Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752

Obala, J and Saxena, R K and Singh, V K and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics (TSI), 294 (1). pp. 57-68. ISSN 1617-4615

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Abbai, R and Singh, V K and Nachimuthu, V V and Sinha, P and Selvaraj, R and Vipparla, A K and Singh, A K and Singh, U M and Varshney, R K and Kumar, A (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal (TSI), 17 (8). pp. 1612-1622. ISSN 14677644

Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. International Journal of Agriculture and Biology. pp. 1-8. ISSN 1814–9596 (In Press)

Luo, H and Pandey, M K and Khan, A W and Guo, J and Wu, B and Cai, Y and Huang, L and Zhou, X and Chen, Y and Chen, W and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI). pp. 1248-1260. ISSN 1467-7644

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Saxena, K B and Saxena, R K and Sharma, S and Sameer Kumar, C V and Sultana, R and von Wettberg, E B and Varshney, R K (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica (TSI), 214 (12). pp. 1-20. ISSN 0014-2336

Saxena, R K and Rathore, A and Bohra, A and Yadav, P and Das, R R and Khan, A W and Singh, V K and Chitikineni, A and Singh, I P and Sameer Kumar, C V and Varshney, R K (2018) Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. The Plant Genome (TSI), 11 (3). pp. 1-10. ISSN 1940-3372

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Khera, P and Pandey, M K and Mallikarjuna, N and Sriswathi, M and Roorkiwal, M and Janila, P and Sharma, S and Shilpa, K and Sudini, H and Guo, B and Varshney, R K (2018) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics (TSI). pp. 1-14. ISSN 1617-4615

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2018) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X

Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266

Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X

Singh, S and Gupta, S K and Thudi, M and Das, R R and Anil Kumar, V and Garg, V and Varshney, R K and Rathore, A and Pahuja, S K and Yadav, D V (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet. Crop Science (TSI), 58 (6). pp. 2379-2390. ISSN 0011-183X

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

Bera, S K and Manohar, S S and Variath, M T and Chaudhari, S and Yaduru, S and Thankappan, R and Narayana, M and Kurapati, S and Pandey, M K and Sudini, H and Shanmugavel, S and Kulandaivelu, G and Varshney, R K and Pasupuleti, J and Link, W (2018) Assessing variability for disease resistance and nutritional quality traits in an interspecific collection of groundnut (Arachis hypogaea ). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2018) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2018) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

Varshney, R K and Tuberosa, R and Tardieu, F (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany (TSI), 69 (13). pp. 3175-3179. ISSN 0022-0957

Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640

Mahdavi Mashaki, K and Garg, V and Ghomi, A A N and Kudapa, H and Chitikineni, A and Zaynali Nezhad, K and Yamchi, A and Soltanloo, H and Varshney, R K and Thudi, M (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE (TSI), 13 (6). pp. 1-17. ISSN 1932-6203

Lu, Q and Li, H and Hong, Y and Zhang, G and Wen, S and Li, X and Zhou, G and Li, S and Liu, H and Liu, H and Liu, Z and Varshney, R K and Chen, X and Liang, X (2018) Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). Frontiers in Plant Science (TSI), 9 (604). pp. 1-15. ISSN 1664-462X

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

Saxena, K B and Choudhary, A K and Saxena, R K and Varshney, R K (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science (TSI), 68 (2). pp. 159-167. ISSN 1344-7610

Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322

Ye, H and Roorkiwal, M and Valliyodan, B and Zhou, L and Chen, P and Varshney, R K and Nguyen, H T (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany (TSI), 69 (13). pp. 3267-3277. ISSN 0022-0957

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology (TSI), 18(1) (29). pp. 1-18. ISSN 1471-2229

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Gayathri, M and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1) (10). pp. 1-6. ISSN 1756-0500

Khedikar, Y and Pandey, M K and Sujay, V and Singh, S and Nayak, S N and Klein-Gebbinck, H W and Sarvamangala, C and Mukri, G and Garg, V and Upadhyaya, H D and Nadaf, H L and Gowda, M V C and Varshney, R K and Bhat, R S (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding (TSI), 38(1) (7). pp. 1-12. ISSN 1380-3743

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Paul, P J and Samineni, S and Sajja, S and Rathore, A and Das, R R and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica (TSI), 214(2) (27). pp. 1-27. ISSN 0014-2336

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621

Obala, J and Saxena, R K and Singh, V K and Vechalapu, S and Das, R R and Rathore, A and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian journal of crop science, 12 (12). pp. 1859-1865. ISSN 1835-2707

Ojiewo, C O and Monyo, E and Desmae, H and Boukar, O and Mukankusi-Mugisha, C and Thudi, M and Pandey, M K and Saxena, R K and Gaur, P M and Chaturvedi, S K and Fikre, A and Ganga Rao, N V P R and Sameer Kumar, C V and Okori, P and Janila, P and Rubyogo, J C and Godfree, C and Akpo, E and Omoigui, L and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Diallo, S and Echekwu, C and Umar, M L and Oteng-Frimpong, R and Mohammed, H and Varshney, R K and Ordon, F (2018) Genomics, genetics and breeding of tropical legumes for better livelihoods of smallholder farmers. Plant Breeding (TSI). pp. 1-13. ISSN 01799541

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Saxena, R K and Patel, K and Sameer Kumar, C V and Tyagi, K and Saxena, K B and Varshney, R K (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics (TSI). pp. 1-10. ISSN 0040-5752

Kudapa, H and Garg, V and Chitikineni, A and Varshney, R K (2018) The RNA-Seq based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development. Plant, Cell & Environment (TSI). pp. 1-17. ISSN 0140-7791

Chaturvedi, S K and Jha, S K and Singh, N P and Gaur, P M and Varshney, R K (2018) Technological And Policy Intervention For Increasing Chickpea Production In India. Pulse India, 8 (1). pp. 7-12.

Vishwakarma, M K and Kale, S M and Sriswathi, M and Naresh, T and Shasidhar, Y and Garg, V and Pandey, M K and Varshney, R K (2017) Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis. Frontiers in Plant Science, 8 (2064). pp. 1-13. ISSN 1664-462X

Zhao, J and Huang, L and Ren, X and Pandey, M K and Wu, B and Chen, Y and Zhou, X and Chen, W and Xia, Y and Li, Z and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2017) Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Frontiers in Plant Science, 8 (2105). pp. 1-13. ISSN 1664-462X

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

Roorkiwal, M and Jain, A and Kale, S M and Doddamani, D and Chitikineni, A and Thudi, M and Varshney, R K (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal. pp. 1-12. ISSN 14677644

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Saxena, R K and Obala, J and Sinjushin, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784. ISSN 0040-5752

Zongo, A and Khera, P and Sawadogo, M and Shasidhar, Y and Sriswathi, M and Vishwakarma, M K and Sankara, P and Ntare, B R and Varshney, R K and Pandey, M K and Desmae, H (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15. pp. 132-137. ISSN 2215017X

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052

Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X

Pratap, A and Chaturvedi, S K and Tomar, R and Rajan, N and Malviya, N and Thudi, M and Saabale, P R and Prajapati, U and Varshney, R K and Singh, N P (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics. pp. 1-9. ISSN 1617-4615

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 (1140). pp. 1-10. ISSN 1664-462X

Halder, U and Banerjee, A and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). pp. 1-2. ISSN 2169-8287

Iquebal, M A and Soren, K R and Gangwar, P and Shanmugavadivel, P S and Aravind, K and Singla, D and Jaiswal, S and Jasrotia, R S and Chaturvedi, S K and Singh, N P and Varshney, R K and Rai, A and Kumar, D (2017) Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. Frontiers in Plant Science, 8 (958). pp. 1-12. ISSN 1664-462X

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

Shasidhar, Y and Vishwakarma, M K and Pandey, M K and Janila, P and Variath, M T and Manohar, S S and Nigam, S N and Guo, B and Varshney, R K (2017) Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (794). pp. 1-14. ISSN 1664-462X

Pazhamala, L T and Purohit, S and Saxena, R K and Garg, V and Krishnamurthy, L and Verdier, J and Varshney, R K (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054. ISSN 0022-0957

Garg, V and Agarwal, G and Pazhamala, L T and Nayak, S N and Kudapa, H and Khan, A W and Doddamani, D and Sharma, M and Kavi Kishor, P B and Varshney, R K (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Frontiers in Plant Science, 8 (488). pp. 1-16. ISSN 1664-462X

Tardieu, F and Varshney, R K and Tuberosa, R (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398. ISSN 0022-0957

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290

Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644

Luo, H and Ren, X and Li, Z and Xu, Z and Li, X and Huang, L and Zhou, X and Chen, Y and Chen, W and Lei, Y and Liao, B and Pandey, M K and Varshney, R K and Guo, B and Jiang, X and Liu, F and Jiang, H (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (58). pp. 1-12. ISSN 1471-2164

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Parupalli, S and Saxena, R K and Sameer Kumar, C V and Sharma, M and Singh, V K and Vechalapu, S and Kavi Kishor, P B and Saxena, K B and Varshney, R K (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244. ISSN 0970-6380

Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Sharma, S and Pandey, M K and Sudini, H and Upadhyaya, H D and Varshney, R K (2017) Harnessing Genetic Diversity of Wild Arachis Species for Genetic Enhancement of Cultivated Peanut. Crop Science, 57 (3). pp. 1121-1131. ISSN 0011-183X

Singh, V K and Khan, A W and Saxena, R K and Sinha, P and Kale, S M and Parupalli, S and Kumar, V and Chitikineni, A and Vechalapu, S and Sameer Kumar, C V and Sharma, M and Ghanta, A and Yamini, K N and Muniswamy, S and Varshney, R K (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal. pp. 1-9. ISSN 1467-7644

Bohra, A and Jha, R and Pandey, G and Patil, P G and Saxena, R K and Singh, I P and Singh, D and Mishra, R K and Mishra, A and Singh, F and Varshney, R K and Singh, N P (2017) New Hypervariable SSR Markers for Diversity Analysis, Hybrid Purity Testing and Trait Mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 (377). pp. 1-15. ISSN 1664-462X

Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Saxena, R K and Sameer Kumar, C V and Bohra, A and Singh, I P and Singh, N P and Varshney, R K (2017) Pigeonpea Research for Enhancing Crop Productivity. Pulse India, 2 (7). pp. 8-10.

Saxena, K B and Saxena, R K and Varshney, R K (2017) Use of immature seed germination and single seed descent for rapid genetic gains in pigeonpea. Plant Breeding. pp. 1-4. ISSN 01799541

Huang, L and Ren, X and Wu, B and Li, X and Chen, W and Zhou, X and Chen, Y and Pandey, M K and Jiao, Y and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2016) Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports, 6 (39478). pp. 1-10. ISSN 2045-2322

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X

Janila, P and Rupavatharam, S and Sameer Kumar, C V and Samineni, S and Gaur, P M and Varshney, R K (2016) Technologies for Intensification of Production and Uses of Grain Legumes for Nutrition Security. Proceedings of the Indian National Science Academy, 82 (5). pp. 1541-1553. ISSN 0370-0046

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Sharma, M and Sengupta, A and Ghosh, R and Agarwal, G and Tarafdar, A and Nagavardhini, A and Pande, S and Varshney, R K (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (37353). 01-11. ISSN 2045-2322

Pazhamala, L T and Agarwal, G and Bajaj, P and Kumar, V and Kulshreshtha, A and Saxena, R K and Varshney, R K (2016) Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLOS ONE, 11 (10). 01-17. ISSN 1932-6203

Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X

Samineni, S and Kamatam, S and Thudi, M and Varshney, R K and Gaur, P M (2016) Vernalization response in chickpea is controlled by a major QTL. Euphytica, 207 (2). pp. 453-461. ISSN 0014-2336

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372

Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X

Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

Gumma, M K and Kumara Charyulu, D and Mohammed, I and Varshney, R K and Gaur, P M and Whitbread, A M (2016) Satellite imagery and household survey for tracking chickpea adoption in Andhra Pradesh, India. International Journal of Remote Sensing, 37 (08). pp. 1955-1972. ISSN 1366-5901

Janila, P and Pandey, M K and Manohar, S S and Variath, M T and Nallathambi, P and Nadaf, H L and Sudini, H and Varshney, R K (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (03). pp. 355-366. ISSN 1439-0523

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Vishwakarma, M K and Pandey, M K and Shasidhar, Y and Manohar, S S and Nagesh, P and Janila, P and Varshney, R K (2016) Identification of two major quantitative trait locus for fresh seed dormancy using the diversity arrays technology and diversity arrays technology-seq based genetic map in Spanish-type peanuts. Plant Breeding, 135. pp. 367-375. ISSN 0179-9541

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Gaur, P M and Singh, M K and Samineni, S and Sajja, S and Jukanti, A K and Kamatam, S and Varshney, R K (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209. pp. 253-260. ISSN 1573-5060

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Thudi, M and Khan, A W and Kumar, V and Gaur, P M and Katta, K and Garg, V and Roorkiwal, M and Samineni, S and Varshney, R K (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (10). pp. 53-64. ISSN 1471-2229

Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652

Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322

Varshney, R K (2016) Exciting journey of 10 years from genomes to fields and markets: some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut. Plant Science, 242. pp. 98-107. ISSN 0168-9452

Saxena, K B and Sameer Kumar, C V and Saxena, R K and Vijay Kumar, R and Singh, I P and Hingane, A J and Mula, M G and Patil, S B and Varshney, R K (2016) Hybrid pigeonpea: Accomplishments and challenges for the next decade. Legume Perspectives (11). pp. 30-32. ISSN 2340-1559

Sinha, P and Pazhamala, L T and Singh, V K and Saxena, R K and Krishnamurthy, L and Azam, S and Khan, A W and Varshney, R K (2016) Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 06 (1065). 01-10. ISSN 1664-462X

Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452

Sameer Kumar, C V and Singh, I P and Vijay Kumar, R and Patil, S B and Tathineni, R and Mula, M G and Saxena, R K and Hingane, A J and Rathore, A and Ravinder Reddy, CH and Nagesh Kumar, M and Sudhakar, C and Varshney, R K (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). 08-10. ISSN 2340-1559

Mula, M G and Sameer Kumar, C V and Ravinder Reddy, CH and Monyo, E and Saxena, R K and Varshney, R K (2016) Pigeonpea seed systems in Asia. Legume Perspectives (11). pp. 44-45. ISSN 2340-1559

Saxena, R K and Saxena, K B and Sameer Kumar, C V and Singh, N P and Varshney, R K (2016) Strategies for pigeonpea improvement. Legume Perspectives (11). pp. 50-51. ISSN 2340-1559

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Jacob, S and Sajjalaguddam, R R and Kumar, K V K and Varshney, R K and Sudini, H (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology. pp. 1-9. ISSN 1610-739X

Banerjee, A and Halder, U and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2016) Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. Genome Announcements, 4 (6). pp. 1-2. ISSN 2169-8287

Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382

Kumar, V and Khan, A W and Saxena, R K and Garg, V and Varshney, R K (2016) First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (08). pp. 1673-1681. ISSN 1467-7652

Saxena, R K and Thudi, M and Varshney, R K (2016) Genomics, trait mapping and molecular breeding in pigeonpea and chickpea. Indian Journal of Genetics and Plant Breeding, 76 (4). pp. 504-511. ISSN 0019-5200

Saxena, K B and Sameer Kumar, C V and Hingane, A J and Nagesh Kumar, M V and Vijaykumar, R and Saxena, R K and Patil, S and Varshney, R K (2016) Hybrid ICPH 2740 assures quantum jump in pigeonpea productivity in peninsular India. Journal of Food Legumes, 29 (2). pp. 142-144. ISSN 0970-6380

Sameer Kumar, C V and Wani, S P and Nagesh Kumar, M V and Jaganmohan Rao, P and Saxena, K B and Hingane, A J and Sudhakar, C and Pushpavalli, S N V C L and Yamini, K N and Shruthi, H B and Saxena, R K and Varshney, R K (2016) Hybrid Technology–a new vista in pigeonpea breeding. The Journal of Research PJTSAU, 44 (4). pp. 1-13. ISSN 2395-5945

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S and Zheng, Y and Ma, S and Tang, R and Varshney, R K and Zhuang, W (2016) Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnol Journal, 14 (2). pp. 682-698. ISSN 2349-6738

Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644

Kaoneka, S R and Saxena, R K and Silim, S N and Odeny, D A and Ganga Rao, N V P R and Shimelis, H A and Siambi, M and Varshney, R K (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154. ISSN 1439-0523

Kolekar, R M and Sujay, V and Shirasawa, K and Sukruth, M and Khedikar, Y P and Gowda, M V C and Pandey, M K and Varshney, R K and Bhat, R S (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156. ISSN 0014-2336

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Ramalingam, A and Kudapa, H and Pazhamala, L T and Garg, V and Varshney, R K (2015) Gene Expression and Yeast Two-Hybrid Studies of 1R-MYB Transcription Factor Mediating Drought Stress Response in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 (1117). 01-10. ISSN 1664-462X

Ramalingam, A and Kudapa, H and Pazhamala, L T and Weckwerth, W and Varshney, R K (2015) Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Frontiers in Plant Science, 6 (1116). 01-21. ISSN 1664-462X

Sinha, P and Saxena, R K and Singh, V K and Krishnamurthy, L and Varshney, R K (2015) Selection and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) under Heat and Salt Stress Conditions. Frontiers in Plant Science, 6 (1071). 01-10. ISSN 1664-462X

Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Katta, M A V S K and Khan, A W and Doddamani, D and Thudi, M and Varshney, R K (2015) NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data. PLOS One, 10 (10). pp. 1-9. ISSN 1932-6203

Reddy, P S and Jogeswar, G and Rasineni, G K and Maheswari, M and Reddy, A R and Varshney, R K and Kavi Kishor, P B (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94. pp. 104-113. ISSN 0981-9428

Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Broad-Spectrum Streptomyces sp. for Plant Growth Promotion Traits in Chickpea (Cicer arietinum L.). Philippine Agricultural Scientist, 98 (3). pp. 270-278. ISSN 0031-7454

Saxena, R K and Saxena, K B and Pazhamala, L T and Patel, K and Parupalli, S and Sameer Kumar, C V and Varshney, R K (2015) Genomics for greater efficiency in pigeonpea hybrid breeding. Frontiers in Plant Science. ISSN 1664-462X

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

Gopalakrishnan, S and Sathya, A and Vijayabharathi, R and Varshney, R K and Gowda, C L L and Krishnamurthy, L (2015) Plant growth promoting rhizobia: challenges and opportunities. 3 Biotech, 5 (4). pp. 355-377. ISSN 2190-5738

Khera, P and Saxena, R K and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2015) Mitochondrial SSRs and their utility in distinguishing wild species, CMS lines and maintainer lines in pigeonpea (Cajanus cajan L.). Euphytica. pp. 1-10. ISSN 1573-5060

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Sinha, P and Saxena, K B and Saxena, R K and Singh, V K and Suryanarayana, V and Sameer Kumar, C V and Katta, M A V S and Khan, A W and Varshney, R K (2015) Association of Gene with Cytoplasmic Male Sterility in Pigeonpea. The Plant Genome, 8 (2). pp. 1-12. ISSN 1940-3372

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

Srikanth, S and Saxena, R K and Rao, M V and Varshney, R K and Mallikarjuna, N (2015) Development of a new CMS system in pigeonpea utilizing crosses with Cajanus lanceolatus (WV Fitgz) van der Maesen. Euphytica, 204 (02). pp. 289-302. ISSN 1573-5060

Jadhav, A A and Rayate, S J and Mhase, L B and Thudi, M and Chitikineni, A and Harer, P N and Jadhav, A S and Varshney, R K and Kulwal, P L (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics. ISSN 0973-7731

Faye, I and Pandey, M K and Hamidou, F and Rathore, A and Ndoye, O and Vadez, V and Varshney, R K (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647. ISSN 1573-5060

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

Sinha, P and Singh, V K and Suryanarayana, V and Krishnamurthy, L and Saxena, R K and Varshney, R K (2015) Evaluation and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) Under Drought Stress Conditions. PLOS One, 10 (4). pp. 1-15. ISSN 1932-6203

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Roorkiwal, M and Thudi, M and Gaur, P M and Upadhyaya, H D and Singh, N P and Varshney, R K (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives (7). pp. 7-9. ISSN 2340-1559

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060

Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Organic Agriculture, 5 (2). pp. 123-133. ISSN 1879-4238

Deokar, A A and Kondawar, V and Kohli, D and Aslam, M and Jain, P K and Karuppayil, S M and Varshney, R K and Srinivasan, R (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46. ISSN (ISSN: 1438-793X, ESSN: 1438-7948)

Kashiwagi, J and Krishnamurthy, L and Purushothaman, R and Upadhyaya, H D and Gaur, P M and Gowda, C L L and Ito, O and Varshney, R K (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 (-). pp. 47-54. ISSN 1872-6852

Gaur, P M and Samineni, S and Tripathi, S and Varshney, R K and Gowda, C L L (2015) Allelic relationships of flowering time genes in chickpea. Euphytica, 203 (2). pp. 295-308. ISSN 0014-2336

Purushothaman, R and Thudi, M and Krishnamurthy, L and Upadhyaya, H D and Kashiwagi, J and Gowda, C L L and Varshney, R K (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174. pp. 1-11. ISSN 0378-4290

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Hickey, J M and Gorjanc, G and Varshney, R K and Nettelblad, C (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov model. Crop Science, 55. pp. 1-13. ISSN 0011-183X

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

Jenko, J and Gorjanc, G and Cleveland, M A and Varshney, R K and Whitelaw, C B A and Woolliams, J A and Hickey, J M (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (55). pp. 1-34. ISSN 0999-193X

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

Sukruth, M and Paratwagh, S A and Sujay, V and Kumari, V and Gowda, M V C and Nadaf, H L and Motagi, B N and Lingaraju, S and Pandey, M K and Varshney, R K and Bhat, R S (2015) Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica, 204 (2). pp. 343-351. ISSN 0014-2334

Varshney, R K (2015) Young researchers need to focus more on agriculture : Interview of Dr. R K Varshney. Bio Spectrum, 13 (11-12). pp. 78-79.

Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Rathore, A and Varshney, R K (2015) The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. SpringerPlus, 4 (31). pp. 1-10. ISSN 2193-1801

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Zhu, F and Han, J and Liu, S and Chen, X and Varshney, R K and Liang, X (2014) Cloning, Expression Pattern Analysis and Subcellular Localization of Resveratrol Synthase Gene in Peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 5 (24). pp. 3619-3631. ISSN 2158-2750

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Garg, R and Varshney, R K and Jain, M (2014) Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science, 5. ISSN 1664-462X

Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621

Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752

Doddamani, D and Katta, M A V S K and Khan, A W and Agarwal, G and Shah, T M and Varshney, R K (2014) CicArMiSatDB: the chickpea microsatellite database. BMC Bioinformatics, 15 (212). pp. 1-7. ISSN 1471-2105

Zhu, W and Chen, X and Li, H and Zhu, F and Hong, Y and Varshney, R K and Liang, X (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409. ISSN 1573-5028

Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203

Sharma, M and Nagavardhini, A and Thudi, M and Ghosh, R and Pande, S and Varshney, R K (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (454). pp. 1-14. ISSN 1471-2164

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

Gaur, P M and Samineni, S and Varshney, R K (2014) Drought and heat tolerance in chickpea. Legume Perspetives (3). pp. 15-17. ISSN 2340-1559

Upadhyaya, H D and Dwivedi, S L and Sharma, S and Lalitha, N and Singh, S and Varshney, R K and Gowda, C L L (2014) Enhancement of the use and impact of germplasm in crop improvement. Plant Genetic Resources: Characterization and Utilization, 12 (S1). S155-S159. ISSN 1479-2621

Gopalakrishnan, S and Srinivas, V and Prakash, B and Arumugam, S and Vijayabharathi, R and Rupela, O and Kudapa, H and Krishnamohan, K and Varshney, R K (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169. pp. 40-48. ISSN 0944-5013

Roorkiwal, M and von Wettberg, E J and Upadhyaya, H D and Warschefsky, E and Rathore, A and Varshney, R K (2014) Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers. PLoS ONE, 9 (7). pp. 1-10. ISSN 1932-6203

Thudi, M and Upadhyaya, H D and Rathore, A and Gaur, P M and Krishnamurthy, L and Roorkiwal, M and Nayak, S N and Chaturvedi, S K and Basu, P S and Ganga Rao, N V P R and Fikre, A and Kimurto, P and Sharma, P C and Sheshashayee, M S and Tobita, S and Kashiwagi, J and Ito, O and Killian, A and Varshney, R K (2014) Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches. PLoS ONE, 9 (5). e96758. ISSN 1932-6203

Saxena, R K and von Wettberg, E and Upadhyaya, H D and Sanchez, V and Songok, S and Saxena, K B and Kimurto, P.K. and Varshney, R K (2014) Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). pp. 1-9. ISSN 1932-6203

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Wang, L and Yu, S and Tong, C and Zhao, Y and Liu, Y and Song, C and Zhang, Y and Zhang, X and Wang, Y and Hua, W and Li, D and Li, F and Yu, J and Xu, C and Han, X and Huang, S and Tai, S and Wang, J and Xu, X and Li, Y and Liu, S and Varshney, R K and Wang, J and Zhang, X (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (R39). pp. 1-13. ISSN 1465-6906

Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X

Millan, T and Madrid, E and Varshney, R K (2014) Genomic resources in chickpea. Legume Perspectives (3). pp. 12-14. ISSN 2340-1559

Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

Bohra, A and Pandey, M K and Jha, U C and Singh, B and Singh, I P and Datta, D and Chaturvedi, S K and Nadarajan, N and Varshney, R K (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. pp. 1-29. ISSN 1432-2242

Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173

Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X

Azam, S and Rathore, A and Shah, T and Mohan, T and Amindala, BP and Ruperao, P and Katta, M A V S K and Varshney, R K (2014) An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data. PLoS ONE, 9 (7). pp. 1-11. ISSN 1932-6203

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Ali, L and Madrid, E and Varshney, R K and Azam, S and Millan, T and Rubio, J and Gill, J (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488. ISSN 0040-5752

Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372

Varshney, R K and Pandey, M K and Janila, P and Nigam, S N and Sudini, H and Gowda, M V C and Sriswathi, M and Radhakrishnan, T and Manohar, S S and Nagesh, P (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781. ISSN 0040-5752

Upadhyaya, H D and Dwivedi, S L and Vadez, V and Hamidou, F and Singh, S and Varshney, R K and Liao, B (2014) Multiple Resistant and Nutritionally Dense Germplasm Identified from Mini Core Collection in Peanut. Crop Science, 54 (2). pp. 679-693. ISSN 1435-0653

Kim, D H and Kaashyap, M and Rathore, A and Das, R A and Parupalli, S and Upadhyaya, H D and Gopalakrishnan, S and Gaur, P M and Singh, S and Kaur, J and Yasin, M and Varshney, R K (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 1-5. ISSN 0250-5991

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Varshney, R K and Parzies, H K (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435. ISSN 1573-5060

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

Ruperao, P and Chan, C-K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrana, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal. ISSN 1467-7652

Varshney, R K (2013) Seeking Sustainable Protein Sources for Asia and Sub-Saharan Africa. Illumina Community Newsletter. pp. 1-2.

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Kim, D H and Parupalli, S and Azam, S and Lee, S H and Varshney, R K (2013) Comparative sequence analysis of nitrogen fixation-related genes in six legumes. Frontiers in Plant Science, 4 (300). pp. 1-8.

Tuteja, R and Saxena, R K and Davila, J and Shah, T and Chen, W and Xiao, Y-L and Fan, G and Saxena, K B and Alverson, A J and Spillane, C and Town, C and Varshney, R K (2013) Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes. DNA Research, 20 (5). pp. 485-495. ISSN 1756-1663

Chen, X and Zhu, W and Azam, S and Li, H and Zhu, F and Li, H and Hong, Y and Liu, H and Zhang, E and Wu, H and Yu, S and Zhou, G and Li, S and Zhong, N and Wen, S and Li, X and Knapp, S J and Ozias-Akins, P and Varshney, R K and Liang, X (2013) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.

Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Gowda, C L L and Upadhyaya, H D and Sharma, S and Varshney, R K and Dwivedi, S L (2013) Exploiting genomic resources for efficient conservation and utilization of chickpea, groundnut, and pigeonpea collections for crop improvement. The Plant Genome, 6 (3). pp. 1-28. ISSN 1940-3372

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Janila, P and Nigam, S N and Pandey, M K and Nagesh, P and Varshney, R K (2013) Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Genetics and Genomic, 4 (23). pp. 1-16.

Saxena, K B and Kumar, R V and Tikle, A N and Saxena, M K and Gautam, V S and Rao, S K and Khare, D K and Chauhan, Y S and Saxena, R K and Reddy, B V S and Sharma, D and Reddy, L J and Green, J M and Faris, D G and Mula, M G and Sultana, R and Srivastava, R K and Gowda, C L L and Sawargaonkar, S L and Varshney, R K (2013) ICPH 2671 – the world’s first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485. ISSN 1439-0523 (In Press)

Liu, Z and Feng, S and Pandey, M K and Chen, X and Culbreath, A K and Varshney, R K and Guo, B (2013) Identification of expressed resistance gene analogs from peanut (Arachis hypogaea L.) expressed sequence tags. Journal of Integrative Plant Biology, 55 (5). pp. 453-461. ISSN 1744-7909 (In Press)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Varshney, R K and Roorkiwal, M and Nguyen, T (2013) Legume Genomics: From Genomic Resources to Molecular Breeding. The Plant Genome, 6 (3). pp. 1-7. ISSN 1940-3372

Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408

Upadhyaya, H D and Dronavalli, N and Dwivedi, S L and Kashiwagi, J and Krishnamurthy, L and Pande, S and Sharma, H C and Vadez, V and Singh, S and Varshney, R K and Gowda, C L L (2013) Mini Core Collection as a Resource to Identify New Sources of Variation. Crop Science, 53 (6). pp. 2506-2517. ISSN 1435-0653

Mudaraddi, B and Saxena, K B and Saxena, R K and Varshney, R K (2013) Molecular diversity among wild relatives of Cajanus cajan (L.) Millsp. African Journal of Biotechnology, 12 (24). pp. 3797-3801. ISSN 1684-5315

Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060

Krishnamurthy, L and Kashiwagi, J and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Singh, Sube and Purushothaman, R and Varshney, R K (2013) Partitioning coefficient—A trait that contributes to drought tolerance in chickpea. Field Crops Research, 149. pp. 354-365. ISSN 0378-4290

Rajaram, V and Nepolean, T and Senthilvel, S and Varshney, R K and Vadez, V and Srivastava, R K and Shah, T M and Supriya, A and Kumar, S and Kumari, B R and Bhanuprakash, A and Narasu, M L and Riera-Lizarazu, O and Hash, C T (2013) Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs. BMC Genomics, 14 (159). pp. 1-15.

Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806

Sharma, S and Upadhyaya, H D and Varshney, R K and Gowda, C L L (2013) Pre-breeding for diversification of primary gene pool and genetic enhancement of grain legumes. Frontiers in Plant Science, 4 (309). pp. 1-14. ISSN 1664-462X

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Roorkiwal, M and Sawargaonkar, S L and Chitikineni, A and Thudi, M and Saxena, R K and Upadhyaya, H D and Vales, M I and Riera-Lizarazu, O and Varshney, R K (2013) Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform. The Plant Genome, 6 (2). pp. 1-10. ISSN 1940-3372

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Khera, P and Upadhyaya, H D and Pandey, M K and Roorkiwal, M and Sriswathi, M and Janila, P and Guo, Y and McKain, M R and Nagy, E D and Knapp, S J and Leebens-Mack, J and Conner, J A and Ozias-Akins, P and Varshney, R K (2013) Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays. The Plant Genome, 6 (3). pp. 1-11. ISSN 1940-3372

Kashiwagi, J and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Varshney, R K and Tobita, S (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 (1). pp. 88-95. ISSN 0378-4290

Krishnamurthy, L and Kashiwagi, J and Tobita, S and Ito, O and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Sheshshayee, M S and Singh, Sube and Vadez, V and Varshney, R K (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 14 (12). pp. 1350-1361. ISSN 1445-4408

Mir, R R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Kilian, A and Cook, D R and Varshney, R K (2013) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding, 132 (5). pp. 472-478. ISSN 1439-0523

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Parzies, H K and Bharathi, A and Varshney, R K and Gowda, C L L (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223. ISSN 1479-2621

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Varshney, R K and Ribaut, J M and Buckler, E S and et al, . (2012) Can genomics boost productivity of orphan crops? Nature Biotechnology, 30. pp. 1172-1176. ISSN 1087-0156

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Azam, S and Thakur, V and Ruperao, P. and Shah, T and Balaji, J and Amindala, B. and Farmer, A D and Studholme, D.J. and May, G D and Edwards, D. and Jones, J.D.G. and Varshney, R K (2012) Coverage-Based Consensus Calling (CBCC) Of Short Sequence Reads And Comparison Of CBCC Results To Identify SNPs In Chickpea ( Cicer Arietinum ; Fabaceae), A Crop Species Without A Reference Genome 1. American Journal of Botany, 99 (2). pp. 186-192. ISSN 1537-2197

Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647

Wang, H and Penmetsa, R V and Yuan, M and Varshney, R K and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-3. ISSN 1471-2229

Mallikarjuna, N and Saxena, K B and Lakshmi, J and Varshney, R K and Srikanth, S and Jadhav, D R (2012) Differences between Cajanus cajan (L.) Millspaugh and C. cajanifolius (Haines) van der Maesen, the progenitor species of pigeonpea. Genetic Resources and Crop Evolution, 59 (3). pp. 411-417. ISSN 1573-5109

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Saxena, K B and Saxena, R K and Kumar, R V and Varshney, R K (2012) Evidence of a unique inter-allelic epistatic interaction for seed coat color in pigeonpea [Cajanus cajan (L.) Millspaugh]. Euphytica, 186 (3). pp. 813-816. ISSN 1573-5060

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

Saxena, K B and Kumar, R V and Saxena, R K and Sharma, M and Srivastava, R K and Sultana, R and Varshney, R K and Vales, M I and Pande, S (2012) Identification of dominant and recessive genes for resistance to Fusarium wilt in pigeonpea and their implication in breeding hybrids. Euphytica, 188 (2). pp. 221-227. ISSN 1573-5060

Gaur, P M and Jukanti, A.K. and Varshney, R K (2012) Impact of Genomic Technologies on Chickpea Breeding Strategies. Agronomy, 2. pp. 199-221. ISSN 2073-4395

Mir, R R and Zaman-Allah, M and Sreenivasulu, N and Trethowan, R and Varshney, R K (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. TAG Theoretical and Applied Genetics, 125 (4). pp. 625-645. ISSN 1432-2242

Gautami, B and Fonce´ka, D and Pandey, M K and Sujay, V and Bhanuprakash, A and Shah, T and Nigam, S N and Hoisington, D A and Varshney, R K and et al, . (2012) An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.). Plos ONE-Biotechnology, 7 (7). pp. 1-11.

Saxena, R K and Penmetsa, R V and Upadhyaya, H D and Kumar, Ashish and Varshney, R K and et al, . (2012) Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes. DNA Research. pp. 1-13. ISSN 1756-1663

Sharma, M and Ghosh, R and Krishnan, R R and Nagamangala, U N and Chamarthi, S K and Varshney, R K and Pande, S (2012) Molecular and morphological diversity in Rhizoctonia bataticola isolates causing dry root rot of chickpea (Cicer arietinum L.) in India. African Journal of Biotechnology, 11 (37). pp. 8949-8959. ISSN 1684–5315

Varshney, R K and May, G D (2012) Next-generation sequencing technologies: opportunities and obligations in plant genomics. Briefings in Functional Genomics, 11 (1). pp. 1-2. ISSN 2041-2647

Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and et al, . (2012) Phenotyping chickpeas and pigeonpeas for adaptation to drought. Frontiers in Plant Physiology, 3 (179). pp. 1-10.

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

Sujay, V and Gowda, M V C and Pandey, M K and Bhat, R S and Khedikar, Y P and Nadaf, H L and Gautami, B and Sarvamangala, C and Lingaraju, S and Radhakrishan, T and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788. ISSN 1572-9788

Gangola, M and Khedikar, Y and Gaur, P M and Baga, M and Varshney, R K and Chibbar, R (2012) Variation in important seed constituents among various chickpea genotypes. Quality Assurance and Safety of Crops & Foods, 4 (3). pp. 136-158. ISSN 1757-837X

Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Sefera, T and Abebie, B and Gaur, P M and Assefa, K and Varshney, R K (2011) Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62 (2). pp. 177-187. ISSN 1836-5795

Gowda, M V C and Bhat, R S and Sujay, V and Kusuma, P and Kumari, Varsha and Varshney, R K and Bhat, S (2011) Characterization of AhMITE1 transposition and its association with the mutational and evolutionary origin of botanical types in peanut (Arachis spp.). Plant Systematics and Evolution, 291 (3-4). pp. 153-158.

Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).

Krishnamurthy, L and Turner, N C and Gaur, P M and Upadhyaya, H D and Varshney, R K and Siddique, K H M and Vadez, V (2011) Consistent Variation across Soil Types in Salinity Resistance of a Diverse Range of Chickpea (Cicer arietinum L.) Genotypes. Journal Of Agronomy And Crop Science, 197 (3). pp. 214-227.

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Upadhyaya, H D and Ramesh, S and Sharma, S and Singh, S K and Varshney, R K and Sarma, N D R K and Ravishankar, C R and Narasimhudu, Y and Reddy, V G and Sahrawat, K L and Dhanalakshmi, T N and Mgonja, M A and Parzies, H K and Gowda, C L L and Singh, Sube (2011) Genetic diversity for grain nutrients contents in a core collection of finger millet (Eleusine coracana (L.) Gaertn.) germplasm. Field Crops Research, 121. pp. 42-52. ISSN 0378-4290

Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.

Saxena, K B and Sultana, R and Saxena, R K and Kumar, R V and Sandhu, J S and Rathore, A and Kavi Kishor, P B and Varshney, R K (2011) Genetics of Fertility Restoration in A4-Based, Diverse Maturing Hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51. pp. 574-578. ISSN 0011-183X

Neumann, K and Kobiljski, B and Dencic, S and Varshney, R K and Borner, A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Molecular Breeding, 27. pp. 37-58. ISSN 1572-9788

Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.

Tuberosa, R and Graner, A and Varshney, R K (2011) Genomics of plant genetic resources: an introduction. Plant Genetic Resources, 9 (2). pp. 151-154. ISSN 1479-2621

Sharma, R and Thakur, R P and Senthilvel, S and Nayak, S N and Veera Reddy, S and Rao, V P and Varshney, R K (2011) Identification and Characterization of Toxigenic Fusaria Associated with Sorghum Grain Mold Complex in India. Mycopathologia, 171. pp. 223-230.

Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Krishnamurthy, L and Gaur, P M and Basu, P S and Chaturvedi, S K and Tripathi, S and Vadez, V and Rathore, A and Varshney, R K and Gowda, C L L (2011) Large genetic variation for heat tolerance in the reference collection of chickpea (Cicer arietinum L.) germplasm. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 59-69.

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Anuradha, C and Gaur, P M and Pande, S and Gali, K K and Ganesh, M and Kumar, J and Varshney, R K (2011) Mapping QTL for resistance to botrytis grey mould in chickpea. Euphytica, 182 (1). pp. 1-9. ISSN 0014-2336

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Upadhyaya, H D and Reddy, K N and Sharma, S and Varshney, R K and Bhattacharjee, R and Singh, Sube and Gowda, C L L (2011) Pigeonpea composite collection and identification of germplasm for use in crop improvement programmes. Plant Genetic Resources, 9 (1). pp. 97-108. ISSN 1479-2621

Mallikarjuna, N and Senapathy, S and Jadhav, D R and Saxena, K B and Sharma, H C and Upadhyaya, H D and Rathore, A and Varshney, R K (2011) Progress in the utilization of Cajanus platycarpus Benth.) Maesen in pigeonpea improvement. Plant Breeding, 130 (5). pp. 507-514.

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.

Saxena, R K and Cui, X and Thakur, V and Walter, B and Close, T J and Varshney, R K (2011) Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.). Functional & Integrative Genomics, 11 (4). pp. 651-657.

Bhardwaj, R and Sandhu, J S and Varshney, R K and Gaur, P M and Kaur, L and Vikal, Y (2011) Synteny relationships among the linkage groups of chickpea (Cicer arietinum L.). Journal of Food Legumes, 24 (2). pp. 91-95.

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2010) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 121 (05). pp. 971-984. ISSN 1432-2242

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26 (2). pp. 371-380. ISSN 1380-3743

Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266

Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26. pp. 371-380. ISSN 1572-9788

Thakur, V and Varshney, R K (2010) Challenges and Strategies for Next Generation Sequencing (NGS) Data Analysis. Journal of Computer Science & Systems Biology, 3. pp. 40-42.

Sharma, R and Rao, V P and Varshney, R K and Prasanth, V P and Kannan, S and Thakur, R P (2010) Characterisation of pathogenic and molecular diversity in Sclerospora graminicola, the causal agent of pearl millet downy mildew. Archives of Phytopathology and Plant Protection, 43 (6). pp. 538-551. ISSN 0323-5408

Witzel, K and Weidner, A and Surabhi, G K and Varshney, R K and Kunze, G and Buck-Sorlin, G H and Borner, A and Mock, H P (2010) Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination. Plant, Cell and Environment, 33 (2). pp. 211-222.

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Salem, K F M and Varshney, R K and Roder, M S and Borner, A (2010) EST-SSR based estimates on functional genetic variation in a barley (Hordeum vulgare L.) collection from Egypt. Genetic Resources and Crop Evolution, 57. pp. 515-525.

Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.

Cook, D R and Varshney, R K (2010) From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology, 13 (2). pp. 115-118.

Ravi, K and Upadhyaya, H D and Dwivedi, S L and Hoisington, D A and Varshney, R K (2010) Genetic relationships among seven sections of genus Arachis studied by using SSR markers. BMC Plant Biology, 10 (15). pp. 1-12.

Bhardwaj, R and Sandhu, J S and Kaur, L and Gupta, S K and Gaur, P M and Varshney, R K (2010) Genetics of ascochyta blight resistance in chickpea. Euphytica, 171 (3). pp. 337-343. ISSN 1573-5060

Bohra, A and Mallikarjuna, N and Saxena, K B and Upadhyaya, H D and Vales, I and Varshney, R K (2010) Harnessing the Potential of Crop Wild Relatives through Genomics Tools for Pigeonpea Improvement. Journal of Plant Biology, 37 (1). pp. 83-98.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Saxena, K B and Sultana, R and Mallikarjuna, N and Saxena, R K and Kumar, R V and Sawargaonkar, S L and Varshney, R K (2010) Male-sterility systems in pigeonpea and their role in enhancing yield. Plant Breeding, 129 (2). pp. 125-134.

Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799

Saxena, R K and Prathima, C and Saxena, K B and Hoisington, D A and Singh, N K and Varshney, R K (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.). Plant Breeding, 129 (2). pp. 142-148.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.

Flowers, T J and Gaur, P M and Gowda, C L L and Krishnamurthy, L and Samineni, S and Siddique, K H M and Turner, N C and Vadez, V and Varshney, R K and Colmer, T D (2010) Salt sensitivity in chickpea. Plant, Cell and Environment , 33 (4). pp. 490-509. ISSN 0140-7791

Saxena, R K and Saxena, K B and Kumar, R V and Hoisington, D A and Varshney, R K (2010) Simple sequence repeat-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance to Fusarium wilt and sterility mosaic disease. Plant Breeding, 129. pp. 135-141. ISSN 0179-9541

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).

Raju, N K and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P J and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discoveryand marker development in pigeonpea(Cajanus cajan L.). BMC Plant Biology, 10. pp. 45-66. ISSN 14712229

Tatikonda, L and Wani, S P and Kannan, S and Beerelli, N and Sreedevi, T K and Hoisington, D A and Devi, P and Varshney, R K (2009) AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant. Plant Science, 176 (4). pp. 505-513.

Varshney, R K and Pande, S and Kannan, S and Thudi, M and Sharma, M and Gaur, P M and Hoisington, D A (2009) Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). Mycological Progress. pp. 1-11.

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Sharma, M and Varshney, R K and Rao, J N and Kannan, S and Hoisington, D A and Pande, S (2009) Genetic diversity in Indian isolates of Fusarium oxysporum f. sp. ciceris, chickpea wilt pathogen. African Journal of Biotechnology, 8 (6). pp. 1016-1023.

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2009) High level of natural variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding, 128 (5). pp. 486-494.

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Gulati, P and Varshney, R K and Virdi, J S (2009) Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A. Journal Of Applied Microbiology, 107 (3). pp. 875-884.

Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.

Varshney, R K and Dubey, A (2009) Novel genomic tools and modern genetic and breeding approaches for crop improvement. Journal of Plant Biochemistry and Biotechnology, 18 (2). pp. 127-138.

Gautami, B and Ravi, K and Narasu, M L and Hoisington, D A and Varshney, R K (2009) Novel set of groundnut SSR markers for germplasm analysis and interspecific transferability. International Journal of Integrative Biology, 7 (2). pp. 100-106.

Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266

Jayashree, B and Prakash, A B and Jami, A and Reddy, P S and Nayak, S N and Varshney, R K (2009) Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes, 2. pp. 1-5.

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Singh, R and Sharma, P and Varshney, R K and Sharma, S K and Singh, N K (2008) Chickpea Improvement: Role of Wild Species and Genetic Markers. Biotechnology & Genetic Engineering Reviews, 25. pp. 267-314.

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

Chabane, K and Varshney, R K and Graner, A and Valkoun, J (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881. ISSN 1573-5109

Upadhyaya, H D and Dwivedi, S L and Baum, M and Varshney, R K and Udupa, S M and Gowda, C L L and Hoisington, D A and Singh, Sube (2008) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology, 8 (106). pp. 1-12.

Varshney, R K and Thiel, T and Sretenovic-Rajicic, T and Baum, M and Valkoun, J and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Molecular Breeding, 22 (1). pp. 1-13. ISSN 1380-3743

Mace, E S and Varshney, R K and Mahalakshmi, V and Seetha, K and Gafoor, A and Leeladevi, Y and Crouch, J H (2008) In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science, 174 (1). pp. 51-60. ISSN 0168-9452

Cuc, L M and Mace, E S and Crouch, J H and Quang, V D and Long, T D and Varshney, R K (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (55). pp. 1-11.

Varshney, R K and Coyne, C J and Swamy, P and Hoisington, D A (2008) Molecular identification of genetically distinct accessions in the USDA chickpea core collection. Pisum Genetics, 39. pp. 32-33. ISSN 1320-2510

Sharma, H C and Varshney, R K and Gaur, P M and Gowda, C L L (2008) Potential for using morphological, biochemical, and molecular markers for resistance to insect pests in grain legumes. Journal of Food Legumes, 21 (4). pp. 211-217. ISSN 0970-6380

Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621

Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

Varshney, R K (2007) Chickpea Genomics Consortium on Drought Tolerance. Journal of SAT Agricultural Research, 3 (1). p. 1.

Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452

Varshney, R K and Nayak, S N and Jayashree, B and Eshwar, K and Upadhyaya, H D and Hoisington, D A (2007) Development of cost-effective SNP assays for chickpea genome analysis and breeding. Journal of SAT Agricultural Research, 3 (1). pp. 1-3. ISSN 0973-3094

Marcel, T C and Aghnoum, R and Durand, J and Varshney, R K and Niks, R E (2007) Dissection of the Barley 2L1.0 Region Carrying the ‘Laevigatum’ Quantitative Resistance Gene to Leaf Rust Using Near-Isogenic Lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615. ISSN 0894-0282

Hoisington, D A and Varshney, R K (2007) Diversity Arrays Technology (DArT) Low Cost, Generic Molecular Markers for Breeding and Research. Biotech News, 2 (1). pp. 6-8.

Varshney, R K and Horres, R and Molina, C and Nayak, S N and Jungmann, R and Swamy, P and Winter, P and Jayashree, B and Kahl, G and Hoisington, D A (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of SAT Agricultural Research, 5 (1). pp. 1-3. ISSN 0973-3094

Amrutha, R N and Sekhar, P N and Varshney, R K and Kishor, P B K (2007) Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.). Plant Science, 172 (4). pp. 708-721. ISSN 0168-9452

Aggarwal, R K and Hendre, P S and Varshney, R K and Bhat, P R and Krishnakumar, V and Singh, L (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. TAG Theoretical and Applied Genetics, 114 (2). pp. 359-372. ISSN 1432-2242

Jayashree, B and Hanspal, M S and Srinivasan, R and Vigneshwaran, R and Varshney, R K and Spurthi, N and Eshwar, K and Ramesh, N and Chandra, S and Hoisington, D A (2007) An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms. Comparative and Functional Genomics (35604). pp. 1-7. ISSN 1531-6912

Vadez, V and Krishnamurthy, L and Serraj, R and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K and Turner, N C and Siddique, K H M (2007) Large variation in salinity tolerance in chickpea is explained by differences in sensitivity at the reproductive stage. Field Crops Research, 104 (1-3). pp. 123-129. ISSN 0378-4290

Varshney, R K (2007) Pigeonpea genomics initiative established under Indo-US agricultural knowledge initiative. Journal of SAT Agricultural Research, 3 (1). p. 1.

Varshney, R K and Beier, U and Khlestkina, K E and Kota, R and Korzun, V and Graner, A and Borner, A (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. TAG Theoretical and Applied Genetics, 114. pp. 1105-1116.

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

Marcel, T C and Varshney, R K and Barbieri, M and Jafary, H and Kock, M J D de and Graner, A and Niks, R E (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. TAG Theoretical and Applied Genetics, 114 (3). pp. 487-500. ISSN 1432-2242

Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

Jayashree, B and Ramu, P and Prasad, P and Bantte, K and Hash, C T and Chandra, S and Hoisington, D A and Varshney, R K (2006) A Database of Simple Sequence Repeats from Cereal and Legume Expressed Sequence Tags Mined in silico: Survey and Evaluation. In Silico Biology, 6 (6). pp. 607-620. ISSN 1434-3207

Varshney, R K and Grosse, I and Hahnel, U and Siefken, R and Prasad, M and Stein, N and Langridge, P and Altschmied, L and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. TAG Theoretical and Applied Genetics, 113 (2). pp. 239-250. ISSN 1432-2242

Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105

Szira, F and Balint, A and Galiba, G and Varshney, R K and Borner, A (2006) Mapping of QTLs for drought tolerance in barley at different development stages. Vorträge Pflanzenzüchtung, 70. pp. 113-115.

Willsmore, K L and Eckermann, P and Varshney, R K and Graner, A and Langridge, P and Pallotta, M and Cheong, J and Williams, K J (2006) New eSSR and gSSR markers added to Australian barley maps. Australian Journal of Agricultural Research, 57 (9). pp. 953-959. ISSN 0004-9409

Rostoks, N and Ramsay, L and MacKenzie, K and Cardle, L and Bhat, P R and Roose, M L and Svensson, J T and Stein, N and Varshney, R K and Marshall, D F and Graner, A and Close, T J and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661. ISSN 1091-6490

Varshney, R K and Graner, A and Sorrells, M E (2005) Genomics-assisted breeding for crop improvement. Trends in Plant Science, 10 (12). pp. 621-630. ISSN 1360-1385

Borner, A and Roder, M S and Chebotar, S and Varshney, R K and Weinder, A (2005) Molecular Tools for Genebank Management and Evaluation. Czech Journal of Genetics and Plant Breeding(Special Issue), 41. pp. 122-127. ISSN 1212-1975

Book Section

Bharadwaj, C and Sachdeva, S and Singh, R K and Patil, B S and Roorkiwal, M and Chaturvedi, S and Varshney, R K (2018) Chickpea Genomics. In: Biotechnologies of Crop Improvement, Volume 3 : Genomic Approaches. Springer, pp. 289-316. ISBN 978-3-319-94745-7

Pandey, M K and Varshney, R K (2018) Groundnut Entered Post-genome Sequencing Era: Opportunities and Challenges in Translating Genomic Information from Genome to Field. In: Biotechnologies of Crop Improvement, Volume 3 : Genomic Approaches. Springer, pp. 199-209. ISBN 978-3-319-94745-7

Varshney, R K and Pandey, M K and Chitikineni, A (2018) Plant Genetics and Molecular Biology: An Introduction. In: Advances in Biochemical Engineering/Biotechnology. Advances in Biochemical Engineering/Biotechnology book series . Springer, Berlin, pp. 1-9.

Varshney, R K and Pandey, M K and Chitikineni, A (2018) Plant Genetics and Molecular Biology: An Introduction. In: Plant Genetics and Molecular Biology. Advances in Biochemical Engineering/Biotechnology book series (ABE, volume 164) . Springer, pp. 1-9. ISBN 978-3-319-91312-4

Jain, A and Roorkiwal, M and Pandey, M K and Varshney, R K (2017) Current Status and Prospects of Genomic Selection in Legumes. In: Genomic Selection for Crop Improvement : New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing, pp. 131-147. ISBN 978-3-319-63168-4

Varshney, R K and Roorkiwal, M and Sorrells, M E (2017) Genomic Selection for Crop Improvement: An Introduction. In: Genomic Selection for Crop Improvement : New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing, pp. 1-6. ISBN 978-3-319-63168-4

Thudi, M and Saxena, R K and Pandey, M K and Varshney, R K (2017) Legume genomics: A perspective. In: Insights on Global Challenges and Opportunities for the Century Ahead. BS Publications, Hyderabad, pp. 321-326. ISBN 978‐93‐5230‐186‐7

Roorkiwal, M and Jain, A and Thudi, M and Varshney, R K (2017) Advances in Chickpea Genomic Resources for Accelerating the Crop Improvement. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 53-67. ISBN 978-3-319-66115-5

Sameer Kumar, C V and Satheesh Naik, S J and Mohan, N and Saxena, R K and Varshney, R K (2017) Botanical Description of Pigeonpea [Cajanus Cajan (L.) Millsp.]. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 17-29. ISBN 978-3-319-63795-2

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome: An Introduction. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-66115-5

Vishwakarma, M K and Nayak, S N and Guo, B and Wan, L and Liao, B and Varshney, R K and Pandey, M K (2017) Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) (169). Springer, pp. 93-116. ISBN 978-3-319-63933-8

Jain, A and Roorkiwal, M and Pandey, M K and Varshney, R K (2017) Current Status and Prospects of Genomic Selection in Legumes. In: Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer, pp. 131-147. ISBN 978-3-319-63170-7

Varshney, R K and Saxena, R K and Jackson, S A (2017) Future Prospects. In: The Pigeonpea Genome. Part of the Compendium of Plant Genomes book series (CPG) . Springer, pp. 99-104. ISBN 978-3-319-63795-2

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) Future Prospects for Chickpea Research. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-142. ISBN 978-3-319-66115-5

Varshney, R K and Pandey, M K and Puppala, N (2017) Future Prospects for Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 165-169. ISBN 978-3-319-63933-8

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Samineni, S and Thudi, M and Sajja, S and Varshney, R K and Gaur, P M (2017) Impact of Genomics on Chickpea Breeding. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 125-134. ISBN 978-3-319-66115-5

Saxena, K B and Saxena, R K and Varshney, R K (2017) Key Plant and Grain Characteristics and Their Importance in Breeding and Adaptation of Pigeonpea Cultivars. In: The Pigeonpea Genome. Springer, pp. 5-15. ISBN 978-3-319-63795-2

Bohra, A and Pareek, S and Jha, R and Saxena, R K and Singh, I P and Pandey, G and Mishra, R K and Singh, F and Kaashyap, M and Joshi, R and Varshney, R K (2017) Modern Genomic Tools for Pigeonpea Improvement: Status and Prospects. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 41-54. ISBN 978-3-319-63795-2

Mir, R R and Rather, I A and Bhat, M A and Parray, G A and Varshney, R K (2017) Molecular Mapping of Genes and QTLs in Pigeonpea. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 55-64. ISBN 978-3-319-63795-2

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome: An Overview. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-63795-2

Thudi, M and Varshney, R K (2017) Requirement of Whole-Genome Sequencing and Background History of the National and International Genome Initiatives. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 107-115. ISBN 978-3-319-66115-5

Nayak, S N and Pandey, M K and Jackson, S A and Liang, X and Varshney, R K (2017) Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-147. ISBN 978-3-319-63933-8

Singh, V K and Saxena, R K and Varshney, R K (2017) Sequencing Pigeonpea Genome. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 93-97. ISBN 978-3-319-63795-2

Khan, A W and Thudi, M and Varshney, R K and Edwards, D (2017) Sequencing the Chickpea Genome. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-123. ISBN 978-3-319-66115-5

Saxena, R K and Varshney, R K (2017) Whole-Genome Sequencing of Pigeonpea: Requirement, Background History, Current Status and Future Prospects for Crop Improvement. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 81-91. ISBN 978-3-319-63795-2

Mallikarjuna, N and Saxena, R K and Byre Gowda, M and Varshney, R K (2017) Wide Crossing Technology for Pigeonpea Improvement. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 31-39. ISBN 978-3-319-63795-2

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Gaur, P M and Thudi, M and Samineni, S and Varshney, R K (2014) Advances in Chickpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 73-94. ISBN 978-1-4614-8370-0

Bohra, A and Saxena, R K and Saxena, K B and Sameer Kumar, C V and Varshney, R K (2014) Advances in Pigeonpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 95-110. ISBN 978-1-4614-8370-0

Mallikarjuna, N and Varshney, R K (2014) Genetics, Genomics and Breeding of Peanut: An Introduction. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 1-12. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2

Mallikarjuna, N and Shilpa, K and Pandey, M K and Janila, P and Varshney, R K (2014) Groundnut. In: Broadening the Genetic Base of Grain Legumes. Springer, India, pp. 161-173. ISBN 978-81-322-2022-0

Pandey, M K and Guo, B and Holbrook, C C and Janila, P and Zhang, X and Bertioli, D J and Isobe, S and Liang, S and Varshney, R K (2014) Molecular Markers, Genetic Maps, and QTLs for Molecular Breeding in Peanut. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 79-113. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2

Mallikarjuna, N and Srikanth, S and Sameer Kumar, C V and Srivastava, R K and Saxena, R K and Varshney, R K (2014) Pigeonpea. In: Broadening the Genetic Base of Grain Legumes. Springer, India, pp. 149-159. ISBN 978-81-322-2022-0

Gupta, P K and Varshney, R K (2013) Cereal Genomics: Excitements, challenges and opportunities. In: Cereal Genomics II. Springer, Netherlands, pp. 1-9. ISBN 978-94-007-6400-2

Sharma, S and Upadhyaya, H D and Roorkiwal, M and Varshney, R K and Gowda, C L L (2013) Chickpea. In: Genetic and Genomic Resources of Grain Legume Improvement. Elsevier, London, UK, pp. 81-111. ISBN 978-0-12-397935-3

Kulwal, P L and Thudi, M and Varshney, R K (2013) Crop breeding for sustainable agriculture, genomics interventions in. In: Sustainable Food Production. Springer, New York, pp. 501-513. ISBN 978-1-4614-5796-1

Mir, R R and Hiremath, P J and Riera-Lizarazu, O and Varshney, R K (2013) Evolving Molecular Marker Technologies in Plants: From RFLPs to GBS. In: Diagnostics in Plant Breeding. Springer Science+Business, New York, pp. 229-247. ISBN 978-94-007-5686-1 ;978-94-007-5687-8 (eBook)

Burow, M D and Leal-Bertioli, S C M and Simpson, C E and Ozias-Akins, P and Chu, Y and Denwar, N N and Chagoya, J and Starr, J L and Moretzsohn, M C and Pandey, M K and Varshney, R K and Holbrook, C C and Bertioli, D J (2013) Marker-Assisted Selection for Biotic Stress Resistance in Peanut. In: Translational Genomics for Crop Breeding: Biotic Stress. Wiley Blackwell, pp. 125-150. ISBN 978-0-470-96290-9

Upadhyaya, H D and Sharma, S and Reddy, K N and Saxena, R K and Varshney, R K and Gowda, C L L (2013) Pigeonpea. In: Genetic and Genomic Resources of Grain Legume Improvement. Elsevier, London, Uk, pp. 181-202. ISBN 978-0-12-397935-3

Varshney, R K and Tuberosa, R (2013) Translational Genomics in Crop Breeding for Biotic Stress Resistance: An Introduction. In: Translational Genomics for Crop Breeding: Biotic Stress. Wiley Blackwell, pp. 1-9. ISBN 978-0-470-96290-9

Mir, R R and Varshney, R K (2012) Future Prospects of Molecular Markers in Plants. In: Molecular Markers in Plants. Blackwell Publishing Ltd, Oxford, UK. , pp. 169-190. ISBN 9781118473023

Fakrudin, B and Tuberosa, R and Varshney, R K (2012) Omics techniques in crop research: an overview. In: Improving Crop Resistance to Abiotic Stress. Wiley-VCH Verlag GmbH & Co. KGaA, pp. 289-300. ISBN 978-3-527-32840-6

Mir, R R and Thudi, M and Chamarthi, S K and Krishnamurthy, L and Gaur, P M and Varshney, R K (2012) Translational Root Genomics for Crop Improvement. In: Root Genomics and Soil Interactions. John Wiley & Sons, Inc., USA, pp. 249-264. ISBN 9781118447093

Kulwal, P and Thudi, M and Varshney, R K (2011) Genomics Interventions in Crop Breeding for Sustainable Agriculture. In: Encyclopedia of Sustainability Science and Technology. Springer. ISBN 978-0-387-89469-0 (In Press)

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D A (2011) Genomics and Physiological Approaches for Root Trait Breeding to Improve Drought Tolerance in Chickpea (Cicer arietinum L.). In: Root Genomics. Springer, Germany, pp. 233-250. ISBN 9783540855453

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D (2011) Genomics and physiological approaches for root trait breeding to improve drought tolerance in chickpea (Cicer arietinum L.). In: Root Genomics. Springer Berlin, Heidelberg, pp. 233-250. ISBN 978-3-540-85545-3

Burstin, J and Gallardo, K and Mir, R R and Varshney, R K and Duc, G (2011) Improving protein content and nutrition quality. In: Biology and Breeding of Food Legumes. CAB International, Wallingford, UK, pp. 314-328. ISBN 9781845937669

Costa de Oliveira, A and Varshney, R K (2011) Introduction to root genomics. In: Root Genomics. Springer Berlin Heidelberg, New York, pp. 1-10. ISBN 978-3-540-85545-3

Chamarthi, S K and Kumar, A and Vuong, T D and Blair, M W and Gaur, P M and Nguyen, H T and Varshney, R K (2011) Trait mapping and molecular breeding. In: Biology and breeding of food legumes. CAB International, Wallingford, UK, pp. 296-313. ISBN 978-1-84593-766-9

Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and Chaturvedi, S K and Basu, P S and Singh, I P (2010) Phenotyping chickpeas and pigeonpeas for adaptation to drought. In: Drought phenotyping in crops: from theory to practice. Generation Challenge Programme, pp. 347-355.

Varshney, R K (2009) Gene-based marker systems in plants: High throughput approaches for marker discovery and genotyping. In: Molecular Techniques in Crop Improvement. Springer, Netherlands, pp. 119-142. ISBN 978-90-481-2966-9

Varshney, R K and Hoisington, D A and Nayak, S N and Graner, A (2009) Molecular Plant Breeding: Methodology and Achievements. In: Plant Genomics: Methods and Protocols. Methods in Molecular Biology (V 513). Humana Press, a part of Springer Science + Business Media, LLC, New York, pp. 283-304. ISBN 978-1-58829-997-0 (Print) ; 978-1-59745-427-8 (Online)

Varshney, R K and Langridge, P and Graner, A (2007) Application of Genomics to Molecular Breeding of Wheat and Barley. In: Advances in Genetics. Elsevier, Amsterdam, UK, pp. 121-155. ISBN 978-0-12-374621-4

Gaur, P M and Srivastava, R K and Gowda, C L L and Pande, S and Sharma, H C and Sharma, K K and Vadez, V and Kashiwagi, J and Krishnamurthy, L and Varshney, R K and Hoisington, D A (2007) Breeding Chickpea for Improved Adaptation to the Semi-Arid Tropical Environments. In: Sustainable Agriculture for Food, Bio-Energy and Livelihood Security. Agrobios International.

Varshney, R K and Thudi, M and Aggarwal, R K and Borner, A (2007) Genic molecular markers in plants: Development and applications. In: Genomics-Assisted Crop Improvement. Springer Netherlands, Dordrecht, The Netherlands, pp. 13-29. ISBN 978-1-4020-6294-0

Varshney, R K and Tuberosa, R (2007) Genomics-assisted crop improvement: An overview. In: Genomics-Assisted Crop Improvement. Springer Verlag, Dordrecht, The Netherlands, pp. 1-12. ISBN 978-1-4020-6294-0

Varshney, R K and Hoisington, D A and Upadhyaya, H D and Gaur, P M and Nigam, S N and Saxena, K B and Vadez, V and Sethy, N K and Bhatia, S and Aruna, R and Gowda, M V C and Singh, N K (2007) Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics. In: Genomics-Assisted Crop Improvement Vol 2: Genomics Applications in Crops. Springer Netherlands, Springer Netherlands, Netherlands, pp. 207-241. ISBN 978-1-4020-6296-4

Koebner, R M D and Varshney, R K (2006) Development and Application of Genomic Models for Large-Crop Plant Genomes. In: Model Plants and Crop Improvement. CRC Press(Taylor & Francis), UK, pp. 1-10. ISBN 978-0-8493-3063-6

Azhaguvel, P and Saraswathi, D V and Sharma, A and Varshney, R K (2006) Methodological Advancement in Molecular Markers to Delimit the Gene(s) for Crop Improvement. In: Floriculture, ornamental and plant biotechnology. Global Science Books, Isleworth, UK, pp. 460-469. ISBN 4-903313-00-X

Varshney, R K and Balyan, H S and Langridge, P (2006) Wheat. In: Cereals and Millets. Genome Mapping and Molecular Breeding in Plants, 1 . Springer-Verlag , Berlin, Heidelberg, Germany, pp. 79-134. ISBN 978-3-540-34031-7

Gupta, P K and Varshney, R K (2005) Cereal Genomics: An Overview. In: Cereal Genomics. Springer Netherlands, Netherlands, pp. 1-18. ISBN 978-1-4020-2359-0

Sreenivasulu, N. and Varshney, R K and Kishore, P K and Weschke, W (2005) Functional Genomics for Tolerance to Abiotic Stress in Cereals. In: Cereal Genomics. Springer Netherlands, pp. 483-514. ISBN 978-1-4020-2359-0

Varshney, R K and Korzun, V and Borner, A (2005) Molecular Maps in Cereals: Methodology and Progress. In: Cereal Genomics. Springer Netherlands, pp. 35-82. ISBN 978-1-4020-2359-0

Schulman, A H and Gupta, P K and Varshney, R K (2005) Organization of Retrotransposons and Microsatellites in Cereal Genomes. In: Cereal Genomics. Springer Netherlands, pp. 83-118. ISBN 978-1-4020-2359-0

Monograph

Wani, S P and Bergvinson, D and Raju, K V and Gaur, P M and Varshney, R K (2016) Mission India for Transforming Agriculture (MITrA),Research Report IDC-4. Technical Report. ICRISAT, Patancheru.

Vales, M I and Saxena, K B and Saxena, R K and Patil, S B and Sawargaonkar, S L and Sultana, R and Sharma, M and Pande, S and Varshney, R K (2012) PRIL_A, PRIL_B and PRIL_C: Pigeonpea Recombinant Inbred Line Mapping Populations Segregating for Resistance to Fusarium Wilt and Sterility Mosaic Disease. Documentation. International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Lalitha, N and Varshney, R K and Sharma, H C and Kashiwagi, J and Gowda, C L L and Dwivedi, S L (2008) Phenotyping reference set of chickpea (Cicer arietinum L.) for agronomic traits including resistance to legume pod borer (Helicoverpa armigera). Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Bharathi, A and Gowda, C L L and Varshney, R K and Dwivedi, S L (2008) Phenotyping reference set of foxtail millet (Setaria italica) for Agronomic Traits. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Hash, C T and Hoisington, D A and Varshney, R K and et al, . (2007) Applications of molecular markers in breeding. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India. (Unpublished)

Jayashree, B and Chandra, S and Hoisington, D A and Upadhyaya, H D and Hash, C T and Vadez, V and Varshney, R K and Senthilvel, S (2007) Bioinformatics platform for ICRISAT's global research needs. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh India. (Unpublished)

Upadhyaya, H D and Varshney, R K and Hash, C T and Hoisington, D A and Gowda, C L L and Reddy, V G and Chandra, S and Lalitha, N and Bharathi, A (2006) Development of composite collection and genotyping of foxtail millet [Setaria italic (L.) Beauv.] composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Bhattacharjee, R and Hoisington, D A and Chandra, S and Varshney, R K and Reddy, K N and Saxena, K B (2006) Molecular characterization of pigeonpea [Cajanus cajan (L.) Millspaugh] composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh India.

Conference or Workshop Item

Janila, P and Radhakrishnan, T and Murali, T V and Bera, S K and Dobariya, K L and Nigam, S N and Varshney, R K and Pandey, M K and Manohar, S S and Manivannan, N and Vasanthi, R P (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, October 10 - 12, 2018, Stellenbosch, South Africa.

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S B and Varshney, R K and Zhuang, W J (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Ruperao, P and Bayer, P and Kenneth Chan, C K and Hayashi, S and Roorkiwal, M and Chitikineni, A and Sutton, T and Batley, J and Varshney, R K and Edwards, D (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Somanaboina, A K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Development of transgenic tomato (Solanum lycoperscicum L.) by heterologous expression of osmotin-like protein (OLP) and chitinase (Chi11) genes for salt and drought stress tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Fountain, J C and Bajaj, P and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Scully, B T and Kemerait, R C and Varshney, R K and Guo, B (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Chaturvedi, S K and Singh, N P and Gaur, P M and Mishra, N and Alok, D and Sumit, S and Varshney, R K (2017) Efforts and strategies for alleviation of drought tolerance in chickpea in India. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Thudi, M and Gaur, P M and Krishnamurthy, L and Samineni, S and Varshney, R K (2017) Enhancing drought tolerance in chickpea using genomics approaches. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kale, S M and Jaganathan, D and Roorkiwal, M and Thudi, M and Purushothaman, R and Praveenkumar, M and Krishnamurthy, L and Kavi Kishor, P B and Gaur, P M and Varshney, R K (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Palavalasa, H K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Genome wide analysis of sodium transporters and expression of Na+/H+-antiporter-like protein (SbNHXLP) gene in tomato for salt tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Roorkiwal, M and Jarquin, D and Jain, A and Garg, V and Kale, S M and Singh, M K and Samineni, S and Gaur, P M and Rathore, A and Chellapilla, B and Tripathi, S and Crossa, J and Varshney, R K (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sinha, P and Saxena, R K and Singh, V K and Khan, A W and Upadhyaya, H D and Desai, A and Sameer Kumar, C V and Varshney, R K (2017) Haplotype for drought responsive genes in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mishra, N and Monyo, E S and Varshney, R K (2017) Harnessing the power of social media to reach the unreached: knowledge dissemination for greater impact of tropical legumes. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2017) High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sameer Kumar, C V and Hingane, A J and Shruthi, H B and Sharma, M and Sudhakar, C and Nagesh Kumar, M V and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P (2017) Hybrid pigeonpea: best bet for maximizing productivity in dry lands. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Singh, S K and Kale, S M and Saxena, R K and Sinha, P and Parupalli, S and Suryanaraya, V and Obala, J and Sameer Kumar, C V and Varshney, R K (2017) Identification and validation of insertion–deletion polymorphisms in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Yadav, P and Saxena, R K and Kandalkar, V S and Sameer Kumar, C V and Varshney, R K (2017) Identification of genes and genomic segments for cleistogamy in Pigeonpea(Cajanus cajan L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kaoneka, S R and Saxena, R K and Singh, V K and Sameer Kumar, C V and Shimelis, H A and Varshney, R K (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Liao, B and Lei, Y and Jiang, H and Yan, L and Wan, L and Huang, L and Zhou, X and Luo, H and Chen, Y and Wang, H and Pandey, M K and Sudini, H and Upadhyaya, H D and Varshney, R K (2017) Management of aflatoxin contamination in groundnut by enhancing host-plant resistance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kudapa, H and Agarwal, G and Chitikineni, A and Gaur, P M and Krishnamurthy, L and Varshney, R K (2017) Mining for heat stress responsive genes by RNA-Seq based comprehensive gene expression analyses in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular mapping of flowering time genes in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, V and Sameer Kumar, C V and Tongoona, P and Sibiya, J and Saxena, K B and Varshney, R K (2017) Molecular mapping of seed protein content in pigeonpea – a drought tolerant crop of the semi-arid tropics. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Puppala, N and Xavier, A and Garg, V and Nayak, S N and Pandey, M K and Varshney, R K and Layland, N and Payton, P and Holbrook, C (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pazhamala, L T and Saxena, R K and Purohit, S and Bajaj, P and Kumar, V and Garg, V and Srikanth, S and Hingane, A J and Kulshreshtha, A and Krishnamurthy, L and Sameer Kumar, C V and Verdier, J and Varshney, R K (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kimurto, P and Oyier, M and Mulwa, R and Songok, S and Towett, B and Cheruiyot, E and Varshney, R K and Gaur, P M and Mahender, T and Ganga Rao, N V P R and Silim, S and Siambi, M (2017) Performance of marker assisted backcross breeding (MABC) elite chickpea lines under drought conditions in Kenya. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Shruthi, H B and Hingane, A J and ReddiSekhar, M and Srivarsha, J and Bhosle, T M and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P and Sameer Kumar, C V (2017) Super early pigeonpea varities and hybrids: New intervener for maximized, time specific dry land production. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Sajja, S and Samineni, S and Gadekar, M and Jayalakshmi, V and Vijayakumar, A and Yasin, M and Varshney, R K (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Samineni, S and Varshney, R K and Sajja, S and Thudi, M and Jayalakshmi, V and Vijayakumar, A and Mannur, D M (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Dillon, N and Kuhn, D and Innes, D and Bally, I and Varshney, R K (2015) Mango Genomics. In: Tropical Agriculture Conference 2015: Meeting the Productivity Challenge in the Tropics, November 16 - 18, 2015, Brisbane Convention & Exhibition Centre, Australia.

Bhat, R S and Kolekar, R M and Asha, B and Sukruth, M and Shirasawa, K and Sujay, V and Khedikar, Y and Sarvamangala, C and Gowda, M V C and Motagi, B N and Varshney, R K (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Sameer Kumar, C V and Nagesh Kumar, M V and Sudhakar, C and Saxena, R K and Varshney, R K (2015) Crop specific traits of Pigeonpea [Cajanus cajan (L.) Millspaugh) and their implications in seed production. In: 8th National Seed Congress, October 27-29, 2015, Hyderabad.

Sameer Kumar, C V and Singh, I P and Patil, S B and Mula, M G and Kumar, R V and Saxena, R K and Varshney, R K (2015) Recent advances in Pigeonpea [Cajanus cajan (L.) Millspaugh) Research. In: II International Conference on Bio-Resource and Stress Management, January 07 - 10, 2015, Hyderabad.

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Sameer Kumar, C V and Mula, M G and Singh, P and Mula, R P and Saxena, R K and Ganga Rao, N V P R and Varshney, R K (2014) Pigeonpea Perspective in India. In: 1st Philippine Pigeonpea Congress, December 16-18, 2014, Mariano Marcos State University, Batac, Ilocos Norte, Philippines. (Submitted)

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

Kudapa, H and Sharma, H C and Krishnamurthy, L and Adivi, S and Vijaya, P and Farmer, A D and Shah, T and Gaur, P M and Varshney, R K (2012) Deciphering the role of stress responsive genes in chickpea (Cicer arietinum L.). In: Proceedings of VI International Conference on Legumes Genetics and Genomics, 2-7 October 2012, Hyderabad, India.

Varshney, R K (2011) Application of Next Generation Sequencing and Genotyping Technologies to Develop Large‐Scale Genomic Resources in SAT Legume Crops. In: National Symposium on Genomics and Crop Improvement: Relevance and Reservations , February 25 - 27, 2010, Acharya N G Ranga Agricultural University, Rajendranagar, Hyd.

Oyier, M.O and Mulwa, R.M.S and Kimurto, P.K. and Towett, B.K. and Cheruiyot, E.K. and Rao, N.V.P.R.G and Silim, S.N. and Varshney, R K and Gaur, P M (2011) Marker assisted backcross breeding to enhance drought tolerance in Kenyan chickpea (Cicer arietinum L.) germplasm. In: 6th Egerton University International Conference: Research and Expo-Transformative Research for Sustainable Development, 21-23 September, 2011, Kenya.

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Upadhyaya, H D and Dwivedi, S L and Varshney, R K and Gowda, C L L and Bhattacharjee, R and Hoisington, D A and Vadez, V (2009) Enhancing the value of legume genetic resources using core/mini core and applied genomic tools. In: International conference on Current trends in Biotechnology, 19-21 Feb. 2009, Meerut, India.

Upadhyaya, H D and Dwivedi, S L and Baum, M and Varshney, R K and Udupa, S M and Gowda, C L L and Prasanth, V P and Furman, B J and Hoisington, D A and Chndra, S and Singh, Sube (2008) Allelic Richness and Diversity in Global Composite Collection and Reference Sets in Chickpea (Cicer Arietinum L.). In: 5th International Crop Science Congress & Exhibition, Jeju, Korea, 13-18 April 2008.

Khedikar, Y P and Patgar, K V and Gowda, M C V and Upadhyaya, H D and Varshney, R K (2008) Construction of a genetic linkage map and QTL analysis for late leaf spot and rust in groundnut (Arachis hypogaea L.). In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2008) Extraordinary high allelic diversity in a groundnut (Arachis hypogaea L.) germplasm collection assayed by robust and informative SSR markers. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Gowda, M V C and Khedikar, Y P and Kusuma, V P and Sujay, V and Bhat, S and Upadhyaya, H D and Varshney, R K (2008) Genetic enhancement of resistance to foliar diseases. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Vadez, V and Krishnamurthy, L and Ratnakumar, P and Rao, S and Devi, J M and Srivastava, N and Sharma, K K and Bhatnagar-Mathur, P and Varshney, R K and Upadhyaya, H D and Aruna, R and Nigam, S N (2008) Phenotypic assessment of groundnut response to key abiotic stress. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Varshney, R K and et al, . (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Upadhyaya, H D and Dwivedi, S L and Varshney, R K and Hoisington, D A and Gowda, C L L (2008) Using genetic and genomic resources to broaden the genetic base of cultivated groundnut. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Vadez, V and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K (2006) Genetic variability for salinity tolerance in chickpea. In: 3rd International Conference on Legume Genomics and Genetics, 9 - 13, April, 2006.

Upadhyaya, H D and Varshney, R K and Hoisington, D A and et al, . (2006) Genotyping composite collection of finger millet [Eleusine coracana (L.) Gaertn]. In: Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Book

Varshney, R K and Pandey, M K and Chitikineni, A (2018) Plant Genetics and Molecular Biology. Advances in Biochemical Engineering/Biotechnology book series (ABE, volume 164) . Springer. ISBN 978-3-319-91312-4

Varshney, R K and Roorkiwal, M and Sorrells, M E (2017) Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing. ISBN 978-3-319-63168-4

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-66115-5

Varshney, R K and Pandey, M K and Puppala, N (2017) The Peanut Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-63933-8

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome. Compendium of Plant Genomes . Springer International Publishing, pp. 1-4. ISBN 978-3-319-63795-2

Monyo, E S and Varshney, R K (2016) Seven seasons of learning and engaging smallholder farmers in the drought-prone areas of sub-Saharan Africa and South Asia through Tropical Legumes, 2007–2014. ICRISAT, Patancheru. ISBN 978-92-9066-568-7

Mallikarjuna, N and Varshney, R K (2014) Genetics, Genomics and Breeding of Peanuts. Series on Genetics, Genomics and Breeding of Crop Plants . CRC Press, Boca Raton. ISBN 9781482238372

Varshney, R K and Tuberosa, R (2013) Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality, Volume 2. John Wiley & Sons, Inc. ISBN 978-0470962916

Gupta, P K and Varshney, R K (2013) Cereal Genomics II. Springer Netherlands. ISBN 978-94-007-6401-9

Lübberstedt, T and Varshney, R K (2013) Diagnostics in Plant Breeding. Springer, Netherlands. ISBN 978-94-007-5686-1

Varshney, R K and Tuberosa, R (2013) Translational Genomics for Crop Breeding: Biotic Stress, Volume 1. John Wiley & Sons, Inc. ISBN 9780470962909

Costa de Oliveira, A and Varshney, R K (2011) Root Genomics. Springer. ISBN 978-3-540-85545-3

Varshney, R K and Tuberosa, R (2007) Genomics-Assisted Crop Improvement, Vol 1: Genomics Approaches and Platforms. Springer, Netherlands. ISBN 978-1-4020-6294-0

Varshney, R K and Tuberosa, R (2007) Genomics-Assisted Crop Improvement, Vol 2: Genomics Applications in Crops. Springer. ISBN 978-1-4020-6296-4

Varshney, R K and Koebner, R M D (2007) Model Plants and Crop Improvement. CRC Press. ISBN 978‑0‑8493‑3063‑6

Gupta, P K and Varshney, R K (2005) Cereal Genomics. Springer. ISBN 978-90-481-6646-6

Other

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

This list was generated on Fri Oct 18 06:12:37 2019 UTC.