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Jump to: 1Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (GDAAS), Guangzhou | A&M University (Tallahassee) | AAFC(Winnipeg) | ACPFG(Adelaide) | AGAP, Université Montpellier, CIRAD, INRA, Montpellier SupAgro (Montpellier) | ANGRAU (Guntur) | ANGRAU - Regional Agricultural Research Station (Nandyal) | ANGRAU Regional Agricultural Research Station (Nandyal) | ANGRAU Regional Agricultural Research Station(Nandyal) | ANGRAU(Hyderabad) | ANGRAU(Tirupati) | ARC Centre of Excellence in Plant Energy Biology and School of Molecular Sciences, The University of Western Australia, Perth | AVRDC -The World Vegetable Center (Patancheru) | AVRDC -The World Vegetable Center (Shanhua) | Aberystwyth University (UK) | Academy of Scientific and Innovative Research(Ghaziabad) | Acharya N G Ranga Agricultural University(Tirupati) | Acharya N G Ranga Agricultural University-RARS, Tirupati | Acharya N. G. 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Istituto di Biologia e Biotecnologia Agraria (Milan) | CREA, Research Centre for Genomics and Bioinformatics, via San Protaso 302, Fiorenzuola d’Arda | CSAUAT(Kanpur) | CSIR Institute of Microbial Technology (Chandigarh) | CSIR, Institute of Microbial Technology (Chandigarh) | CSIR-Central Salt and Marine Chemicals Research Institute(Bhavnagar) | CSIR-Savanna Agricultural Research Institute, Tamale, Ghana | CSIRO (Atherton) | CSIRO (Canberra) | CSIRO (Dutton Park) | CSIRO Agriculture, Centre for Environment and Life Sciences (Wembley) | CSIRO Plant Industry (Wembley) | CSIRO Plant Industry(Wembley) | CSIRO Plant Industry, Center for Environment and Life Sciences (Perth) | CSIRO(Canbera) | CSIRO(Perth) | CSIRO–Plant Industry(Canberra) | Cash Crops Research Institute (Nanning) | Catholic University of Brasília | Center for Applied Genetic Technologies and Institute of Plant Breeding, Genetics & Genomics, The University of Georgia (Athens) | Center for Applied Genetic Technologies, Mars 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Shatin, Hong Kong | Center for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong (Shatin) | Center of Excellence in Genomics & Systems Biology, (Hyderabad) | Central Arid Zone Research Institute (Jodhpur) | Central Arid Zone Research Institute(Jodhpur) | Central Rainfed Upland Rice Research station, National Rice Research Institute (Hazaribagh) | Central Research Institute for Dryland Agriculture (Santoshnagar, Hyderabad) | Central Research Institute for Jute and Allied Fibres(West Bengal) | Central Tribal University of Andhra Pradesh(Vizianagaram) | Central University of Karnataka(Gulbarga) | Central University of Karnataka, Gulbarga, India | Centre Régional d’Excellence Sur Les Céréales Sèches et Cultures Associées, Institut Sénégalais de Recherches Agricoles (ISRA), Bambey, Senegal | Centre for AgriBioscience(Melbourne) | Centre for Agricultural Bioinformatics, Indian Agricultural Statistics Research Institute (ICAR) (New Delhi) | Centre for Agricultural Research, Hungarian Academy of Sciences, Agricultural Institute (Martonvásár) | Centre for Biosystems Genomics(Wageningen) | Centre for Biotechnology, Institute of Science & Technology, JNTU (Hyderabad) | Centre for Biotechnology, Jawaharlal Nehru Technological University (Hyderabad) | Centre for Carbon Water and Food, Faculty of Agriculture and Environment, The University of Sydney (Brownlow Hill) | Centre for Cellular and Molecular Biology | Centre for Cellular and Molecular Biology (CSIR), (Hyderabad) | Centre for Cellular and Molecular Biology(Hyderabad) | Centre for Commercial Law Studies (UK) | Centre for Crop Health, Institute for Life Sciences and the Environment, University of Southern Queensland, (Toowoomba) | Centre for Crop Science, QAAFI, University of Queensland, Brisbane, Queensland, Australia | Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane | Centre for Integrative Legume Research, School of Agriculture and Food Sciences, The University of Queensland, Brisbane (Queensland) | Centre for Integrative Legume Research, University of Queensland (Brisbane) | Centre for Modern Indian Studies, University of Goettingen (Goettingen) | Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, India | Centre for Plant Genetics and Breeding, The University of Western Australia (Crawley) | Centre for Plant Genetics and Breeding,The University of Western Australia (Crawley) | Centre for Plant Molecular Biology and Biotechnology, Tamil Nadu Agricultural University (TNAU), Coimbatore | Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds (Leeds) | Centre for Plant Sciences, University of Leeds, (Leeds) | Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China | Centre 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Charan Singh University(Meerut) | Chaudhary Charan Singh Haryana Agricultural University (CCSHAU), (Hisar) | Chaudhary Charan Singh Haryana Agricultural University (Hisar) | Chaudhary Charan Singh University(Meerut) | Chaudhary Sarwan Kumar Himachal Pradesh Krishi Vishvavidyalaya (CSKHPKV), Regional Station (Dhaulakuan) | Chiba University(Japan) | Chibas and Department of Agriculture and Environmental Sciences, Quisqueya University, Port-au-Prince, Haiti | China Agricultural University (China) | China Agricultural University(Beijing) | China Agricultural University, Beijing | China National Gene Bank (CNGB) (Shenzhen) | China National GeneBank (CNGB) (Shenzen) | China National GeneBank (Shenzhen) | China National GeneBank, BGI-Shenzhen (Shenzhen) | Chinese Academy of Agricultural Science(Zhejiang) | Chinese Academy of Agricultural Sciences (Beijing) | Chinese Academy of Agricultural Sciences (Hangzhou) | Chinese Academy of Agricultural Sciences(Beijing) | Chinese Academy of 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Agriculture, University of Agricultural Sciences (Dharwad) | College of Agriculture, University of Agricultural Sciences – Dharwad, Vijayapur | College of Agriculture, University of Agricultural Sciences, Dharwad (UAS-D), Vijayapur | College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China | College of Agronomy and Biotechnology, Southwest University (Chongqing) | College of Agronomy, Jiangxi Agricultural University, Nanchang, China | College of Biology and Environmental Science, Nanjing Forestry University (Nanjing) | College of Bioscience and Biotechnology, Qiongzhou University (Sanya) | College of Biosciences and Biotechnology, National Cheng Kung University (Tainan) | College of Computer and Information Science, Southwest University (Chongqing) | College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou | College of Crop Sciences, Fujian Agriculture and Forestry University (Fuzhou) | College of Food Science and Engineering of Qingdao Agricultural University (Qingdao) | College of Food Science and Engineering, Qingdao Agricultural University (Qingdao) | College of Life Science of China Jiliang University(Hangzhou) | College of Life Science, China Jiliang University (CJLU), Hangzhou | College of Life Science, National Tsing Hua University (Hsin Chu) | College of Life Science, Qingdao Agricultural University (Qingdao) | College of Life Science, Qingdao Agricultural University (Shandong) | College of Life Science, Qingdao Agricultural University, Qingdao (Shandong) | College of Life Science, South China Agricultural University (Guangzhou) | College of Life Sciences, China Jiliang University, Hangzhou, China | College of Life Sciences, Shaanxi Normal University, Xi’an, China | College of Life Sciences, Shandong Normal University (Jinan) | College of Life Sciences, Zhejiang University (Hangzhou) | College of Plant Protection, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China | College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou | College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou (Fujian) | College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian, China | College of Tropical Biology and Agronomy, Hainan Tropical Marine University (Sanya) | Colorado State University(Fort Collins) | Commonwealth Scientific and Industrial Research Organisation (Brisbane) | Corn Insects and Crop Genetics Research Unit, US Department of Agriculture Agricultural Research Service (Ames) | Corn Insects and Crop Genetics Research Unit, US Department of Agriculture–Agricultural Research Service (Ames) | Corn Insects and Crop Genetics Research Unit, US Department of Agriculture–Agricultural Research Service, Ames, IA, USA | Cornell University | Cornell University (Ithaca) | Cornell University (New York) | Cornell University(Ithaca) | Cornell University(New York) | Cornell University, Biotechnology Building (Ithaca) | Cornell University, Ithaca (New York) | Cornell University, Ithaca, NY, USA | Cornell University, Ithaca, NY 14853, USA | Corporate R&D, LG Chem (Seoul) | Corteva Agriscience (Hyderabad) | Corteva Agriscience (Johnston) | Corteva Agriscience, Indianapolis | Crop Cultivation and Physiological Innovation team at the Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing | Crop Development Centre, Plant Sciences, University of Saskatchewan (Saskatoon) | Crop Development Centre, University of Saskatchewan (Saskatoon) | Crop Genetics and Breeding Research Unit, US Department of Agriculture Agricultural Research Service (Tifton) | Crop Genetics and Breeding Research Unit, USDA-ARS (Tifton) | Crop Genetics and Breeding Research Unit, USDA-ARS, (Tifton) | Crop Genetics and Breeding Research Unit, USDA-ARS, Tifton, USA | Crop Genetics and Breeding Research Unit, USDA-Agricultural Research Service (Tifton) | Crop Genetics and Breeding Research Unit, United States Department of Agriculture – Agriculture Research Service, Tifton | Crop Genetics and Breeding Research Unit, United States Department of Agriculture, Agricultural Research Service (Tifton) | Crop Improvement Division, ICAR- Indian Institute of Pulses Research (ICAR- IIPR), Kanpur | Crop Improvement Division, ICAR-Indian Institute of Pulses Research (Kanpur) | Crop Improvement Division, ICAR-Indian Institute of Pulses, Research (IIPR), Kanpur | Crop Improvement Division, Indian Institute of Pulses Research (IIPR) (Kanpur) | Crop Improvement Section, ICAR-Indian Institute of Rice Research, Hyderabad, India | Crop Improvement, South Australian Research and Development Institute (Urrbrae) | Crop Phenotypic Innovation Research group, Institute of Crop Science, Chinese Academy of Agriculture Sciences | Crop Protection and Management Research Unit, Agricultural Research Service (USDA) (Tifton) | Crop Protection and Management Research Unit, US Department of Agriculture, Agricultural Research Service (Tifton) | Crop Protection and Management Research Unit, US Department of Agriculture-Agricultural Research Service (Tifton) | Crop Protection and Management Research Unit, US Department of Agriculture-Agricultural Research Service (USDA-ARS) (Tifton) | Crop Protection and Management Research Unit, US Department of Agriculture–Agricultural Research Service (Tifton) | Crop Protection and Management Research Unit, USDA-ARS (Tifton) | Crop Protection and Management Research Unit, USDA-ARS, (Tifton) | Crop Protection and Management Research Unit, USDA-ARS, Tifton | Crop Protection and Management Research Unit, USDA-Agricultural Research Service (Tifton) | Crop Protection and Management Research Unit, United State Department of Agriculture – Agricultural Research Service (USDA-ARS), Tifton, USA | Crop Protection and Management Research Unit, United State Department of Agriculture- Agriculture Research Service | Crop Protection and Management Research Unit, United State Department of Agriculture–Agricultural Research Service (USDA-ARS) (Tifton) | Crop Protection and Management Research Unit, United State Department of Agriculture—Agriculture Research Service (USDA—ARS), Tifton | Crop Protection and Management Research Unit, United States Department of Agriculture – Agricultural Research Service, Tifton | Crop Protection and Management Research Unit, United States Department of Agriculture, Agricultural Research Service (Tifton) | Crop Research Institute, Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou) | Crop Research Institute, Jiangxi Academy of Agricultural Sciences, (Nanchang) | Crop Science Lab, Graduate School of Agriculture, Hokkaido University (Sapporo) | Crop, Livestock, and Environment Division, International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki | Crops For the Future (UK) CIC 76-80 Baddow Road, Chelmsford, Essex | Crops Genetics and Breeding Research Unit(Tifton) | Crops Research Institute (CRI) of Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou) | Crops Research Institute (CRI), Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou) | Crops Research Institute (CRI), Guangdong Academy of Agricultural Sciences (GAAS), Guangzhou, China | Crops Research Institute of Guangdong Academy of Agricultural Sciences(Guangzhou) | Crops Research Institute of the Chinese Academy of Agricultural Sciences (Wuhan) | Crops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement (Guangzhou) | Crops Research Institute, Guangdong Academy of Agricultural Sciences (Guangzhou) | Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou | Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China | Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement (Guangzhou) | Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Provincial Key Laboratory for Crop Genetic Improvement, (Guangzhou) | Ctr. for Soybean Research of the State Key Lab. of Agrobiotechnology and School of Life Sciences, The Chinese Univ. of Hong Kong, Shatin, Hong Kong | Curtin University(Bentley) | Curtin University(Perth) | Cyprus University of Technology(Lemesos) | DBT-National Agri-food Biotechnology Institute (NABI), Punjab | DGR(Junagadh) | Dalhousie University(Halifax) | Dbere Birhan Agricultural Research Ceneter (Debere Birhan) | De Ruiter Seeds Benelux(The Netherlands) | Debere Zeit Agricultural Research Center (Debre Zeit) | Debere Zeit Agricultural Research Center, Ethiopian Institute of Agricultural Research (EIAR), Debre Zeit | Debre Zeit Agricultural Research Center | Debre Zeit Agricultural Research Center (Debre Zeit) | DebreZeit Agricultural Research Center, Ethiopian Institute of Agricultural Research (EIAR) (DebreZeit) | Dep. Bioquímica y Biología Molecular | Dep. Crop and Soil Sciences, University of Georgia (Athens) | Dep. of Agriculture and Environmental Sciences, Lincoln Univ., Jefferson, City | Dep. of Plant Sciences, Crop Development Centre, Univ. of Saskatchewan, Saskatoon,(Saskatchewan) | Dep. of Plant and Soil Science, Texas Tech Univ., Lubbock | Departamento de Genética, Universidad de Córdoba, Campus Rabanales (Córdoba) | Department of Agricultural Biotechnology and Biotechnology, Rajendra Prasad Central Agricultural University (Pusa) | Department of Agricultural Biotechnology, Acharya N. G. Ranga Agricultural University (Hyderabad) | Department of Agricultural Sciences (Bologna) | Department of Agricultural Sciences, University of Bologna (Bologna) | Department of Agricultural and Food Sciences, University of Bologna (Bologna) | Department of Agricultural, Food, and Environmental Sciences, Università Politecnica delle Marche (Ancona) | Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City | Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City, MO, USA | Department of Agriculture and Fisheries (Queensland) | Department of Agriculture and Natural Sciences, Tennessee State University (Nashville) | Department of Agriculture, Forests, Nature and Energy (DAFNE), University of Tuscia (Viterbo) | Department of Agriculture, Kalluru (Khammam) | Department of Agriculture, Yezin, Myanmar | Department of Agroenvironmental Science and Technology (Bologna) | Department of Agroenvironmental Science and Technology(Bologna) | Department of Agroenvironmental Sciences and Technology (Italy) | Department of Agronomy and Horticulture, University of Nebraska (Lincoln) | Department of Agronomy and Horticulture, University of Nebraska-Lincoln (Lincoln) | Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, USA | Department of Agronomy(Purdue University) | Department of Agronomy, College of Agriculture, Kansas State University (Manhattan) | Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University (Nakhon Pathom) | Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen Campus (Nakhon Pathom) | Department of Agronomy, Iowa State University (Ames) | Department of Agronomy, Iowa State University, Ames | Department of Agronomy, Iowa State University, Ames, IA, USA | Department of Agronomy, Iowa State University, Ames, IA, USA, | Department of Agronomy, Kansas State Universit (Manhattan) | Department of Agronomy, Kansas State University (Manhattan) | Department of Agronomy, Kansas State University, (Manhattan) | Department of Agronomy, Kansas State University, Manhattan, KS | Department of Agronomy, The University of Florida (Gainesville) | Department of Agronomy, University of Agriculture Faisalabad (Faisalabad) | Department of Agronomy, University of Florida (Gainesville) | Department of Analytical Chemistry, Regional Centre of Advanced Technologies and Materials, Palacký University in Olomouc (Olomouc) | Department of Biochemistry and Molecular Biology, University of Massachusetts (Amherst) | Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, Starkvile | Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, Starkville | Department of Biochemistry, University of Calcutta, Kolkata | Department of Biological Sciences (Florida) | Department of Biological Sciences Huntsville, The University of Alabama in Huntsville (Huntsville) | Department of Biological Sciences, College of Science and Technology, Florida A&M University (Tallahassee) | Department of Biological Sciences, Florida A&M University (Tallahassee) | Department of Biological Sciences, Florida International University (Miami) | Department of Biology, Case Western Reserve University (Cleveland) | Department of Biology, East Carolina University (Greenville) | Department of Biology, Faculty of Sciences, University Abdou Moumouni (Niamey) | Department of Biology, Genetics Institute, Interdisciplinary Center for Biotechnology Research, University of Florida (Gainesville) | Department of Biology, Genetics Institute, and Plant Molecular & Cellular Biology Program, University of Florida (Gainesville) | Department of Bioscience & Biotechnology, Banasthali University (Banasthali) | Department of Biosciences, Sardar Patel University (Anand) | Department of Biotechnology and the DST/NRF Centre of Excellence in Food Security, University of the Western Cape (Bellville) | Department of Biotechnology, Ministry of Science and Technology, Government of India | Department of Biotechnology, Present Address: University of Agricultural Sciences (Dharwad) | Department of Biotechnology, University of Agricultural Sciences (Dharwad) | Department of Biotechnology, University of Agricultural Sciences (UAS) (Dharwad) | Department of Biotechnology, University of Agricultural Sciences (UAS), Dharwad, India | Department of Biotechnology, University of Agricultural Sciences, Dharwad | Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver | Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, Vienna | Department of Botany, Faculty of Sciences, Palacký University in Olomouc (Olomouc) | Department of Botany, Indira Gandhi National Tribal University (IGNTU), Amarkantak | Department of Botany, Palacký University (Olomouc) | Department of Botany, Palacký University in Olomouc (Olomouc) | Department of Botany, Panjab University (Chandigarh) | Department of Botany, Panjab University, (Chandigarh) | Department of Botany, Sister Nibedita Government General Degree College for Girls, Kolkata | Department of Botany, UGC-Center of Advanced Study, The University of Burdwan (Bardhaman) | Department of Chemistry, College of Natural Science, Dankook University (Cheonan) | Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri (Columbia) | Department of Computer Science, Iowa State University (Ames) | Department of Crop Physiology, University of Agricultural Sciences (UAS) (Bangalore) | Department of Crop Science, Breeding and Plant Medicine, Mendel University in Brno (Brno) | Department of Crop Science, North Carolina State University (Raleigh) | Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University (Al-khod) | Department of Crop and Soil Science, University of Georgia (Athens) | Department of Crop and Soil Sciences, North Carolina State University (Raleigh) | Department of Crop and Soil Sciences, North Carolina State University, (Raleigh) | Department of Crop and Soil Sciences, University of Georgia (Tifton) | Department of Ecogenomics and Systems Biology, Faculty of Sciences, University of Vienna (Vienna) | Department of Ecogenomics and Systems Biology, University of Vienna (Vienna) | Department of Ecogenomics and Systems Biology, University of Vienna, Vienna | Department of Economics, University of Goettingen (Goettingen) | Department of Electrical Engineering and Computer Science, and Christopher | Department of Energy Joint Genome Institute, Walnut Creek, CA, USA | Department of Energy, Joint Genome Institute (Walnut Creek) | Department of Environment and Agriculture, Curtin Institute for Computation, Curtin University (Perth) | Department of Environment and Agriculture, Pulse Pathology and Genetics, Centre for Crop and Disease Management and Curtin Institute for Computation, Curtin University (Perth) | Department of Epidemiology & Biostatistics, Michigan State University (East Lansing) | Department of Experimental Plant Biology, Charles University (Prague) | Department of Field Crops, Akdeniz University (Antalya) | Department of Forest Ecosystems and Society, Oregon State University (Corvallis) | Department of Frontier Research and Development, Kazusa DNA Research Institute (KDRI) (Chiba) | Department of Frontier Research and Development, Kazusa DNA Research Institute (Kisarazu) | Department of Frontier Research, Kazusa DNA Research Institute (Chiba) | Department of Frontier Research, Kazusa DNA Research Institute (China and Japan) | Department of Genetics and Biotechnology, Faculty of Science and Technique, University of Abomey-Calavi, Benin | Department of Genetics and Biotechnology, Laboratory of Molecular genetic and genomes analysis, University of Abomey-Calavi, Benin | Department of Genetics and Plant Breeding, Professor Jayashankar Telangana State Agricultural University (PJTSAU), (Hyderabad) | Department of Genetics and Plant Breeding, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (RVSKVV) (Gwalior) | Department of Genetics and Plant Breeding, Sam Higginbottom University of Agriculture, Technology and Sciences (SHUATS) (Allahabad) | Department of Genetics and Plant Breeding, University of Agricultural Sciences (Dharwad) | Department of Genetics and Plant Breeding, University of Agricultural Sciences (Raichur) | Department of Genetics and Plant Breeding, University of Agricultural Sciences (UAS) (Dharwad) | Department of Genetics and Plant Breeding, University of Agricultural Sciences - Raichur (UAS-R), (Raichur) | Department of Genetics(Osmania University) | Department of Genetics, Hebrew University of Jerusalem, Jerusalem 91904, Israel | Department of Genetics, Osmania University (Hyderabad) | Department of Genetics, Osmania University, (Hyderabad) | Department of Genetics, Osmania University, Hyderabad | Department of Genetics, Osmania University, Hyderabad, India | Department of Genetics, University of Cordoba (Cordoba) | Department of Genetics, University of Georgia (Athens) | Department of Genetics, University of Georgia, Athens, GA | Department of Global Health and Population, Harvard T H Chan School of Public Health (Boston) | Department of Health Management and Informatics, University of Missouri, Columbia | Department of Horticulture and Institute of Plant Breeding & Genomics, University of Georgia (Tifton) | Department of Horticulture and Institute of Plant Breeding, Genetics & Genomics, The University of Georgia (Tifton) | Department of Horticulture and Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Tifton | Department of Horticulture, University of Georgia (Tifton) | Department of Horticulture, Zhejiang University, Yuhangtang Road, Hangzhou, China | Department of Human Genetics, Emory University, Atlanta | Department of Life Sciences, Central University of Karnataka, Gulbarga | Department of Life Sciences, Central University of Karnataka, Kadaganchi | Department of Life Sciences, Central University of Karnataka, Karnataka, India | Department of Metabolic Biology, John Innes Centre, Norwich Research Park (UK) | Department of Mycology and Plant Pathology, Banaras Hindu University (Varanasi) | Department of Plant Biology, Mendel University (BrnoBrno) | Department of Plant Biology, University of Georgia, Athens | Department of Plant Biology, University of Illinois of Urbana-Champaign (Urbana) | Department of Plant Bioscience, College of Natural Resources & Life Science, Pusan National University (Pusan) | Department of Plant Breeding & Genetics, Punjab Agricultural University (Ludhiana) | Department of Plant Breeding & Genetics, Punjab Agricultural University, Ludhiana | Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources (Gorgan) | Department of Plant Breeding and Genetics, Cornell University (Ithaca) | Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York | Department of Plant Breeding, Cornell (Ithaca) | Department of Plant Developmental Genetics, Institute of Biophysics, Czech Academy of Sciences (Brno) | Department of Plant Genetics and Breeding, College of Agronomy and Biotechnology, China Agricultural University (Beijing) | Department of Plant Genome Research, Kazusa DNA Research Institute (Chiba) | Department of Plant Pathology and Crop Physiology, Louisiana State University (Baton Rouge) | Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA | Department of Plant Pathology and Plant-Microbe Biology, Cornell University (Geneva) | Department of Plant Pathology, The University of Georgia (Tifton) | Department of Plant Pathology, University of Agricultural Sciences (Dharwad) | Department of Plant Pathology, University of Agricultural Sciences, (Dharwad) | Department of Plant Pathology, University of California (Davis) | Department of Plant Pathology, University of Georgia (Tifton) | Department of Plant Pathology, University of Georgia, (Tifton) | Department of Plant Pathology, University of Georgia, Tifton | Department of Plant Production and Soil Science, Forestry and Agricultural Biotechnology Institute, University of Pretoria (Pretoria) | Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University (Seoul) | Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National University (Seoul) | Department of Plant Science, Bharathidasan University (Tiruchirappalli) | Department of Plant Sciences, North Dakota State University, Fargo, ND | Department of Plant Sciences, School of Life Sciences, University of Hyderabad (Hyderabad) | Department of Plant Sciences, University of California (Davis) | Department of Plant Sciences, University of California, Davis (Davis) | Department of Plant Sciences, University of California–Davis (Davis) | Department of Plant Sciences, University of Oxford, South Parks Road, Oxford | Department of Plant and Soil Science, Texas Tech University (Lubbock) | Department of Plant and Soil Science, Texas Tech University, (Lubbock) | Department of Plant breeding and Genetics, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (Gwalior) | Department of Resource Economics and Environmental Sociology, University of Alberta, Edmonton (Alberta) | Department of Systems Biology and Biotechnology, National Institute of Biology, Ljubljana, Slovenia | Dept of Crops, Horticulture and Soils, Egerton University | Dept of Crops, Horticulture and Soils, Egerton University (Egerton) | Directorate of Groundnut Research (DGR - ICAR) (Junagadh) | Directorate of Groundnut Research (DGR) (Junagadh) | Directorate of Groundnut Research (DGR) of Indian Council of Agricultural Research (ICAR) (Junagadh) | Directorate of Groundnut Research (DGR), (Junagadh) | Directorate of Groundnut Research (Junagadh) | Directorate of Groundnut Research (Junagadh) | Directorate of Groundnut Research(Junagadh) | Directorate of Oilseeds Research(Hyderabad) | Div. of Plant Sciences and National Ctr. for Soybean Biotechnology, Univ. of Missouri, Columbia | DivSeek, Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon | Diversity Arrays Technology Pty Ltd(Canbera) | Diversity Arrays Technology Pty Ltd(Canberra) | Diversité, Adaptation et Développement des Plantes (Montpellier) | Diversité, Adaptation et Développement des Plantes, Université de Montpellier (Montpellier) | Division of Applied Life Science (BK21 plus program) Department, Gyeongsang National University, PMBBRC (Jinju-si) | Division of Biomedical Statistics and Informatics(Rochester) | Division of Genetics & Plant Breeding, Faculty of Agriculture (FoA), Sher-e-Kashmir University of Agricultural Sciences & Technology of Kashmir (SKUAST-K) (Sopore) | Division of Genetics and Plant Breeding, Faculty of Agriculture, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K), Sopore | Division of Genetics, ICAR (IARI) | Division of Genetics, ICAR-Indian Agricultural Research Institute (ICAR-IARI), Delhi | Division of Genetics, ICAR-Indian Agricultural Research Institute (New Delhi) | Division of Genetics, ICAR–IARI Regional Research Centre for Improvement of Pulses, Dharwad, Karnataka | Division of Genetics, ICAR–Indian Agricultural Research Institute (ICAR–IARI), New Delhi | Division of Genetics, Indian Agricultural Research Institute (Delhi) | Division of Genetics, Indian Agricultural Research Institute (ICAR), Pusa, New Delhi, India | Division of Genetics, Indian Agricultural Research Institute (New Delhi) | Division of Genetics, Indian Agricultural Research Institute, Delhi, India | Division of Genetics, Indian Agriculture Research Institute (ICAR), New Delhi, India | Division of Genomic Resources, National Bureau of Plant Genetic Resources (NBPGR) (New Delhi) | Division of Life Science Department, Gyeongsang National University (Jinju-si) | Division of Plant Biotechnology, College of Agriculture and Life Science, Chonnam National University (Gwangju) | Division of Plant Biotechnology, Indian Institute of Pulses Research (ICAR)(Kanpur) | Division of Plant Breeding and Genetics, Punjab Agricultural University (Ludhiana) | Division of Plant Breeding and Genetics, Sher-e-Kashmir University of Agricultural Sciences & Technology of Jammu (SKUAST-J)(Jammu) | Division of Plant Breeding and Genetics, Sher-e-Kashmir University of Agricultural Sciences & Technology of Kashmir (SKUAST-K) (Kashmir) | Division of Plant Breeding and Genetics, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu, India | Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri (Columbia) | Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia | Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, USA | Division of Plant Sciences, Laval University (Quebec) | Division of Plant Sciences, University of Missouri (Columbia) | Division of Plant Sciences, University of Missouri, (Columbia) | Division of Plant Sciences, University of Missouri-Fisher Delta Research Center (Portageville) | Division of Research and Development (DRD), Tanzania Agricultural Research Institute (TARI) - Naliendele (Mtwara) | Dong A University(Busan) | Dong-A University(Busan) | Dow AgroSciences (Indianapolis) | Dow AgroSciences(USA) | DowAgro(Indianapolis) | Dr. Hari Singh Gaur University(Sagar) | Dr. Hari Singh Gour University Sagar(Madhya Pradesh) | Dr. Panjabrao Deshmukh Agricultural University(Akola) | Dr. Rajendra Prasad Central Agricultural University (Samastipur) | Dr. Rajendra Prasad Central Agricultural University(Pusa) | Dr. Rajendra Prasad Central Agricultural University(Samastipur) | EAIR(Debre Zeit) | EARO(Debre Zeit) | EGRB(Brasília) | EH Graham Centre for Agricultural Innovation(Wagga Wagga) | EIAR (Debre Zeit) | EMBRAPA | EMBRAPA(Brasil) | EMBRAPA(Brasília) | EU(Egerton) | Earth System Science Programme, The Chinese University of Hong Kong (Shatin) | Ecole de Gestion Et de Production Végétale Et Semencière, Université Nationale D’Agriculture | Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou | Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou, (Benin) | Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou, Benin | Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou, Bénin | Ecological Environment Protection Research Institute, Shanghai Academy of Agricultural Sciences (Shanghai) | Egerton University (Egerton) | Egerton University (Nakuru) | Egerton University (Njoro) | Egerton University(Egerton) | EgertonUniversity (Njoro) | Ekiti State Polytechnic(Isan) | Eliseu Maciel School of Agronomy, Federal University of Pelotas, Campus UFPel (Capa˜o do Lea˜o) | Embrapa Genetic Resources and Biotechnology | Embrapa Genetic Resources and Biotechnology (Brasília) | Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa , Brasília DF | Embrapa Recursos Gene´ticos e Biotecnologia | Embrapa Recursos Genéticos e Biotecnologia(Brasília) | Embrapa Rice and Beans | Ethiopian Biotechnology Institute, Addis Ababa | Ethiopian Institute of Agricultural Research (Addis Ababa) | Ethiopian Institute of Agricultural Research (Debre Zeit) | Ethiopian Institute of Agricultural Research (EIAR) (Debre Ziet) | Ethiopian Institute of Agricultural Research (EIAR) (Melkassa) | Ethiopian Institute of Agricultural Research(Addis Ababa) | Ethiopian Institute of Agricultural Research, Debre Zeit Agricultural Research Center (Debre Zeit) | Ethiopian Institute of Agricultural Research, P.O. Box 2003, Addis Ababa 251, Ethiopia | FACENA, Universidad Nacional del Nordeste (Corrientes) | FAFU(Fuzhou) | FAO(Rome) | Facultad de Telemática, Universidad de Colima (Colima) | Faculty of Agriculture, Alexandria University, Alexandria | Faculty of Biological Sciences, University of Leeds, Leeds | Faculty of Science, Palacký University in Olomouc (Olomouc) | Faculty of Sciences and Techniques, University Abdou Moumouni (Niamey) | Federal University of Pelotas(Capão do Leão) | Feed the Future Lab for Crop Improvement, 431 Weill Hall, Cornell University, Ithaca | Florida International University(Florida) | Florida International University(MIami) | Forage Crop Research Institute (Japan) | Forage Crop Research Institute, Japan Grassland Agriculture and Forage Seed Association (Nasushiobara) | Forest Research Institute(Dehradun) | Former Principal Scientist (ICRISAT); 17, NMC Housing, Al Ain, Abu Dhabi, UAE | Fort Valley State University, Fort Valley (Georgia) | Frankfurt am Main | Frankfurter Innovationszentrum Biotechnologie(Altenhöferallee) | Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, New Brunswick, Canada | French National Institute for Agricultural Research (INRA) (Montpellier) | Fujian Academy of Agricultural Sciences (Fuzhou) | Fujian Agricultural and Forestry University (Fujian) | Fujian Agricultural and Forestry University(Fujian) | Fujian Agricultural and Forestry University(Fuzhou) | Fujian Agricultural and Forestry University, College of Crop Science (Fuzhou) | Fujian Agricultural and Forestry University, College of Plant Protection (Fuzhou) | Fujian Agriculture & Forestry University (Fujian) | Fujian Agriculture and Forestry University (Fuzhou) | Fujian Agriculture and Forestry University(Fujian) | Fujian Agriculture and Forestry University(Fuzhou) | Fujian Colleges and Universities Engineering Research Institute of Conservation and Utilization of Natural Bioresources, College of Forestry, Fujian Agriculture and Forestry University (Fuzhou) | Fujian Provincial Key Laboratory of Crop Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou (Fujian) | Fujian Provincial Key Laboratory of Plant Molecular and Cell Biology, Oil Crops Research Institute, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University (Fuzhou) | Fujian Provincial Key Laboratory of Plant Molecular and Cell Biology, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China | Fuli Institute of Food Science, Zhejiang University (Hangzhou) | Functional and Applied Genomics Laboratory, National Institute of Plant Genome Research (NIPGR) (New Delhi) | Functional and Applied Genomics Laboratory, National Institute of Plant Genome Research (New Delhi) | G B Pant University of Agriculture and Technology, Pantnagar | GAAS(Guangzhou) | GenXPro (Frankfurt) | GenXPro GmbH(Frankfurt am Main) | GenXPro GmbH(Frankfurt) | Generation Challenge Program(Mexico) | Generation Challenge Program/Integrated Breeding Platform (Mexico) | Generation Challenge Programme | Generation Challenge Programme (GCP)(Mexico) | Generation Challenge Programme(CIMMYT) | Generation Challenge Programme(Mexico) | Genetic Improvement of Fruits and Vegetables Laboratory, USDA-ARS (Beltsville) | Genome British Columbia(Vancouver) | Genome British Columbia, 400-575 West 8th Avenue, Vancouver | Genome Center, University of California (Davis) | Genome Center, University of California, Davis (Davis) | Genome Prairie, 111 Research Drive, Suite 101, Saskatoon, SK | Genomic Diversity Facility, Inst. of Biotechnology, Cornell University (Ithaca) | Genomic Open-Source Breeding Informatics Initiative (GOBii) Project, Institute of Biotechnology, Cornell University, Ithaca, NY, United States | Genomics Towards Gene Discovery Subprogramme | Genomics and Bioinformatics Research Unit, US Department of Agriculture Agricultural Research Service (Stoneville) | Genomics towards Gene Discovery Sub Programme, Generation Challenge Programme (GCP) (Mexico) | Genomics towards Gene Discovery Sub Programme, Generation Challenge Programme (Mexico) | Genomix CARL Pvt. Ltd. Rayalapuram Road, Pulivendula (Kadapa) | Genus plc (Hendersonville) | Ghatal Rabindra Satabarsiki MahaVidyalaya, Paschim Medinipur, West Bengal | Glenn Cole Pioneer(Woodland) | Global Chocolate Science & Technology( Hackettstown) | Global Crop Diversity Trust (Bonn) | Global Crop Diversity Trust (Italy) | Global Crop Diversity Trust(Bonn) | Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon | Goethe University Frankfurt am Main(Frankfurt) | Goethe University(Frankfurt am Main) | Gonder Agricultural Research Ceneter (Gonder) | Google, Mountain View | Government Medical College Thiruvananthapuram (Thiruvananthapuram) | Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica (Taipei) | Grain Legume Genetics and Physiology Research Unit USDA-ARS, Washington State University (Pullman) | Grains Research and Development Corporation (Australia) | Grains Research and Development Corporation (GRDC) (Canberra) | Griffith University(Nathan) | Guandong Academy of Agricultural Sciences(China) | Guangdong Academy of Agricultural Sciences (GAAS), Guangdong | Guangdong Academy of Agricultural Sciences (Guangzhou) | Guangdong Academy of Agricultural Sciences(Guangdong) | Guangdong Academy of Agricultural Sciences(Guangzhou) | Guangdong Key Laboratory of New Technology in Rice Breeding, (Guangzhou) | Guangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University (Shenzhen) | Guangdong Provincial Key Laboratory of Crops Genetics and Improvement (Guangzhou) | Guangxi Academy of Agricultural Sciences (Nanning) | Guangxi Academy of Agricultural Sciences(Guangxi) | Guangzhou University | Guangzhou University(Guangzhou) | Gujarat Agriculture University(Junagadh) | Gujarat Biotechnology Research Centre(Gandhinagar) | Gujarat Biotechnology University(Gandhinagar) | Gujarat Biotechnology University(Gujarat) | Guru Gobind Singh Indraprastha University(Delhi) | HAAS(Wuhan) | Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University (Fuzhou) | Haramaya University (Dire Dawa) | Haramaya University(Dire Dawa) | Hatherly Laboratories (UK) | Heilongjiang Bayi Agricultural University (Daqing) | Henan Academy of Agricultural Sciences (HAAS), Zhenzhou, China | Henan Academy of Agricultural Sciences (Zhengzhou) | Henan Academy of Agricultural Sciences(Zhengzhou) | Henan Academy of Agricultural Sciences, Cash Crops Research Institute (Zhengzhou) | Henan Academy of Agricultural Sciences, Industrial Crops Research Institute (Zhengzhou) | Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Industrial Crops Research Institute, Henan Academy of Agricultural Sciences (Zhengzhou) | Hermitage Research Station | Hokkaido University (Sapporo) | Hokkaido University(Sapparo) | Hokkaido University(Sapparo) | Hokkaido University(Sapporo) | Horticulture Department, University of Georgia, (Tifton) | Huaiyin Normal University (Jiangsu) | Huazhong Agricultural University (Wuhan) | Hubei Academy of Agricultural Sciences(Wuhan) | Hudson-Alpha Institute for Biotechnology, Huntsville, AL, USA | HudsonAlpha Institute of Biotechnology (Huntsville) | Hytech Seed India Pvt Ltd, (Hyderabad) | IARI (New Delhi) | IARI(New Delhi) | IAS-CSIC | ICABIOGRAD-IAARD (Jalan Tentara Pelajar) | ICAR National Organic Farming Research Institute (Gangtok) | ICAR Research Complex for Eastern Region (Patna) | ICAR Research Complex for NEH Region, Tripura Centre, Lembucherra (Tripura) | ICAR(New Delhi) | ICAR- Indian Agricultural Research Institute(New Delhi) | ICAR- Indian Institute of Pulses Research (IIPR), Kanpur, Uttar Pradesh | ICAR- National Institute for Plant Biotechnology, New Delhi | ICAR-Central Arid Zone Research Institute (CAZRI), (Jodhpur) | ICAR-Central Arid Zone Research Institute, Jodhpur | ICAR-Central Institute of Temperate Horticulture (CITH) (Srinagar) | ICAR-Central Research Institute for Jute and Allied Fibres (Barrackpore) | ICAR-Central Soil Salinity Research Institute (ICAR-CSSRI), Karnal | ICAR-Central Soil Salinity Research Institute(Karnal) | ICAR-Directorate of Groundnut Research (DGR) (Junagadh) | ICAR-Directorate of Groundnut Research (DGR), Junagadh | ICAR-Directorate of Groundnut Research (ICAR-DGR) (Junagadh) | ICAR-Directorate of Groundnut Research (ICAR-DGR), (Junagadh) | ICAR-Directorate of Groundnut Research(Junagadh) | ICAR-Directorate of Groundnut Research, (Junagadh) | ICAR-Directorate of Groundnut Research, Post Box No. 05, Ivnagar Road, Junagadh, Gujarat | ICAR-IARI Regional Centre (Dharwad) | ICAR-IIPR (Kanpur) | ICAR-Indian Agricultural Research Institue, Pusa (New Delhi) | ICAR-Indian Agricultural Research Institute (New Delhi) | ICAR-Indian Agricultural Research Institute(New Delhi) | ICAR-Indian Agricultural Research Institute, New Delhi | ICAR-Indian Agricultural Research Institute, Pusa, New Delhi | ICAR-Indian Agricultural Research Institute, Regional Research Centre, Dharwad, Karnataka | ICAR-Indian Agricultural Statistical Research Institute(New Delhi) | ICAR-Indian Agricultural Statistics Research Institute (New Delhi) | ICAR-Indian Institute of Maize Research (Ludhiana) | ICAR-Indian Institute of Millets Research (Hyderabad) | ICAR-Indian Institute of Pulses Research (ICAR-IIPR) (Kanpur) | ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur | ICAR-Indian Institute of Pulses Research (IIPR) (Kanpur) | ICAR-Indian Institute of Pulses Research (IIPR), Kanpur | ICAR-Indian Institute of Pulses Research (IIPR), Kanpur, India | ICAR-Indian Institute of Pulses Research (Kanpur) | ICAR-Indian Institute of Pulses Research(Kanpur) | ICAR-Indian Institute of Pulses Research, Kanpur | ICAR-Indian Institute of Pulses Research, Kanpur, UP, India | ICAR-Indian Institute of Sugarcane Research (Lucknow) | ICAR-NRCPB, Pusa (New Delhi) | ICAR-National Research Centre on Pomegranate(Solapur) | ICAR-National Rice Research Institute, Cuttack | ICAR-Sugarcane Breeding Institute (Coimbatore) | ICAR-Sugarcane Breeding Institute(Coimbatore) | ICAR-lndian Institute of Pulses Research (Kanpur) | ICARDA (Addis Ababa) | ICARDA (Rabat) | ICARDA(Agdal Rabat) | ICARDA(Aleppo) | ICARDA(Amlaha) | ICARDA(Cairo) | ICARDA(Rabat) | ICAR–All India Coordinated Research Project on Chickpea (AICRP-Chickpea), ICAR–IIPR, Kanpur | ICAR–Indian Agricultural Research Institute (IARI) (New Delhi) | ICAR–Indian Agricultural Research Institute (New Delhi) | ICAR–Indian Institute of Maize Research (ICAR–IIMR), PAU campus, Ludhiana, Punjab | ICAR–Indian Institute of Pulses Research (ICAR–IIPR), Kanpur, Uttar Pradesh | ICAR—Indian Institute of Pulses Research (IIPR), Kanpur, Uttar Pradesh | ICMR-National Institute of Nutrition (NIN), Hyderabad | ICMR-National Institute of Nutrition(Hyderabad) | ICRISAT (Addis Ababa) | ICRISAT (Bamako) | ICRISAT (Kano) | ICRISAT (Kenya) | ICRISAT (Lilongwe) | ICRISAT (Nairobi) | ICRISAT (Niamey) | ICRISAT (Patancheru) | ICRISAT (Tanzania) | ICRISAT(Lilongwe) | ICRISAT(Nairobi) | ICRISAT(Niamey) | ICRISAT(Niger) | ICRISAT(Patancheru) | ICRISTA (Patancheru) | IER (Cinzana) | IFAPA (Córdoba) | IIPR(Kanpur) | IITA (Ibadan) | IITA (Kano) | IITA (Lilongwe) | IITA Ibadan | IITA-Kenya c/o International Livestock Research Institute (ILRI) (Nairobi) | INRA - Research Institute in Horticulture and Seeds (IRHS) (Beaucouze) | INRA - Research Institute in Horticulture and Seeds (IRHS)(Beaucouze) | INRA LEPSE (Montpellier) | INRA(Clermont-Ferrand) | INRA(Evry) | INRA(France) | INRA(Montpellier-Cedex) | IPK Gatersleben (Gatersleben) | IPK( Corrensstrasse) | IPK(Corrensstrasse) | IPK(Gatersleben) | IRD, Université Montpellier, DIADE (Montpellier) | IRRI | IRRI South Asia Regional Center, NSRTC Campus, G.T. Road, Collectry Farm, P.O. Industrial Estate, Varanasi | IRRI South Asia Regional Center, Varanasi | IRRI(Los Baños) | IRRI(Manila) | IRRI(Manila) | IRRI(Patancheru) | Ilonga Agricultural Research institute (Kilosa) | Indian Agricultural Research Institute | Indian Agricultural Research Institute (Delhi) | Indian Agricultural Research Institute (IARI) (Delhi) | Indian Agricultural Research Institute (IARI) (New Delhi) | Indian Agricultural Research Institute(New Delhi) | Indian Council of Agricultural Research (ICAR) (Delhi) | Indian Council of Agricultural Research (ICAR) (New Delhi) | Indian Council of Agricultural Research (ICAR), India Institute of Pulses Research (IIPR) (Hyderabad) | Indian Council of Agricultural Research (ICAR), Indian Institute of Pulses Research (IIPR) (Kanpur) | Indian Council of Agricultural Research (ICAR)- Indian Agricultural Research Institute (IARI), New Delhi | Indian Council of Agricultural Research (ICAR)—Central Arid Zone Research Institute (CAZRI) (Jodhpur) | Indian Council of Agricultural Research (New Delhi) | Indian Council of Agricultural Research - Directorate of Groundnut Research (ICAR-DGR), (Junagadh) | Indian Council of Agricultural Research – All India Coordinated Research Project on Pearl Millet (Jodhpur) | Indian Council of Agricultural Research – All India Coordinated Research Project on Pearl Millet, Jodhpur | Indian Council of Agricultural Research – Directorate of Groundnut Research, Junagadh | Indian Council of Agricultural Research(New Delhi) | Indian Council of Agricultural Research, Krishi Bhawan, New Delhi, India | Indian Council of Agricultural Research, RCER (Patna) | Indian Council of Agricultural Research-Directorate of Groundnut Research (ICAR-DGR) (Junagadh) | Indian Council of Agricultural Research-Directorate of Groundnut Research (ICAR-DGR), (Junagadh) | Indian Council of Agricultural Research-Directorate of Groundnut Research (ICAR-DGR), Junagadh | Indian Council of Medical Research(New Delhi) | Indian Institute of Liver and Digestive Sciences, Liver Foundation (Kolkata) | Indian Institute of Maize Research, ICAR (Ludhiana) | Indian Institute of Pulse Research(Kanpur) | Indian Institute of Pulses Research (IIPR) (ICAR) (Kanpur) | Indian Institute of Pulses Research (IIPR) (Kanpur) | Indian Institute of Pulses Research (IIPR) - ICAR (Kanpur) | Indian Institute of Pulses Research (IIPR), Indian Council of Agricultural Research (ICAR) (Kanpur) | Indian Institute of Pulses Research (Kanpur) | Indian Institute of Pulses Research - ICAR (Kanpur) | Indian Institute of Pulses Research(Dharward) | Indian Institute of Pulses Research(Kanpur) | Indian Institute of Pulses Research(Kanpur) | Indian Institute of Pulses Research, IIPR (Kanpur) | Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (Bogor) | Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (ICABIOGRAD-IAARD) (Bogor) | Indonesian Center for Agricultural Biotechnology and Genetic Resources and Development, IAARD (Bogor) | Indonesian Sweetener and Fiber Crops Research Institute, IAARD (Malang) | Indonesian Tropical Fruit Research Institute(Solok) | Information and Computational Sciences, The James Hutton Institute (Dundee) | Inst. for Genomic Diversity, Cornell University (Ithaca) | Institut National d'Environnement et de Recherches Agricoles (INERA) (Ouagadougou) | Institut Sénégalais de Recherches Agricoles (ISRA) (Dakar) | Institut Sénégalais de Recherches Agricoles (ISRA)-Centre National de Recherches Agronomiques (CNRA) (Bambey) | Institut Sénégalais de Recherches Agricoles (ISRA)-Centre National de Recherches Agronomiques (CNRA), Bambey, Senegal | Institut d'Economie Rurale (IER) (Bamako) | Institut de Recherche pour le Developement (IRD), Université de Montpellier, UMR DIADE, Montpellier | Institut de Recherche pour le Developpement (IRD), Université de Montpellier (Montpellier) | Institut de Recherche pour le Développement (IRD), University of Montpellier (Montpellier) | Institut de Recherche pour le Développement (Montpellier) | Institut de l’Environnement et de Recherches Agricoles (INERA) (Kamboinsé) | Institut de recherche pour le développement (IRD) (Montpellier) | Institut des Mondes Africains (IMAf) (Paris) | Institut des Mondes Africains (Paris) | Institut d’Economie Rurale (IER) (Kayes) | Institute for Genomic Diversity, Cornell University, Ithaca, NY | Institute for Genomics, Biocomputing, and Biotechnology, Mississippi State University, Starkville | Institute for Sustainable Agriculture, CSIC (Córdoba) | Institute of Field & Vegetable Crops(Novi Sad) | Institute of Agricultural Research (IAR) (Samaru) | Institute of Agricultural Research (IAR) (Zaria) | Institute of Agricultural Research, IAR (Samaru) | Institute of Agricultural Research, IER (Bamako) | Institute of Agriculture Research, IER (Bamako) | Institute of Agriculture, The University of Western Australia (Crawley) | Institute of Agriculture, The University of Western Australia (Perth) | Institute of Agriculture, University ofWestern Australia, 35 Stirling Highway, Crawley | Institute of Biological Sciences, University of Brasília (Brasília) | Institute of Biological, Environmental and Rural Sciences, Aberystwyth University (Aberystwyth) | Institute of Biological, Environmental and Rural Sciences, Aberystwyth University (Ceredigion) | Institute of Biological, Environmental and Rural Sciences, Aberystwyth University,(Aberystwyth) | Institute of Biotechnology and Genetic Engineering (IBGE), Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur | Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia | Institute of Biotechnology, Professor Jayshankar Telangana State Agricultural University (PJTSAU) (Hyderabad) | Institute of Biotechnology, Professor Jayshankar Telangana State Agricultural University (PJTSAU) (Rajendranagar) | Institute of Crop Science (Japan) | Institute of Crop Science, Chinese Academy of Agricultural Sciences | Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan | Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China | Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS) (Beijing) | Institute of Epidemiology and Resistance Resources | Institute of Experimental Botany of the Czech Academy of Sciences(Olomouc) | Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research (Šlechtitelů) | Institute of Food Science and Technology of Chinese Academy of Agricultural Sciences (Beijing) | Institute of Frontier Technology(Tirupati) | Institute of Genomics for Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock | Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University (Fujian) | Institute of Life Sciences, Scuola Superiore Sant’Anna, Pisa | Institute of Oil Crops, Fujian Agriculture and Forestry University (Fuzhou) | Institute of Oil Crops, Fujian Agriculture and Forestry University, Fuzhou 350002, China | Institute of Plant Breeding, Genetics and Genomics, University of Georgia (Athens) | Institute of Plant Breeding, Genetics and Genomics, University of Georgia (Tifton) | Institute of Plant Breeding, Genetics, and Genomics, The University of Georgia (Athens) | Institute of Plant Genetics and Crop Plant Research(Corrensstrasse) | Instituto Nacional de Tecnología Agropecuaria(Buenos Aires) | Instituto de Agrobiotecnología y Biología Molecular (IABIMO), INTA-CONICET, Nicolas Repetto y Los Reseros Hurlingham, Buenos Aires | Instituto de Botánica del Nordeste (CONICET-UNNE) (Corrientes) | Instituto de Investigaciones Agrobiotecnológicas | Interdepartmental Genetics Graduate Program, Iowa State University (Ames) | Interdepartmental Genetics Program, Iowa State University, Ames, IA, USA | International Center for Agricultural Research in the Dry Areas (Amman) | International Center for Agricultural Research in the Dry Areas (ICARDA) (Beirut) | International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat | International Center for Agricultural Research in the Dry Areas (Morogoro) | International Center for Agricultural Research in the Dry Areas (Rabat) | International Center for Biosaline Agriculture (Dubai) | International Center for Biosaline Agriculture(Dubai) | International Center for Biosaline Agriculture, Academic City, Dubai, United Arab Emirates, Canberra | International Centre for Agricultural Research in the Dry Areas (Cairo) | International Centre for Agricultural Research in the Dry Areas (Rabat) | International Centre for Tropical Agriculture (CIAT) (Arusha) | International Crop Research Center for Stress Resistance/College of Life Sciences, Guangzhou University (Guangzhou) | International Institute of Tropical Agriculture (IITA) (Kano) | International Institute of Tropical Agriculture (IITA), Arusha, Tanzania | International Institute of Tropical Agriculture (IITA), Kano, Nigeria | International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Rd, Ibadan | International Institute of Tropical Agriculture (Nigeria) | International Institute of Tropical Agriculture (South Africa) | International Institute of Tropical Agriculture(Ibadan) | International Institute of Tropical Agriculture, Dar es Salaam | International Institute of Tropical Agriculture, Kano, Nigeria | International Livestock Research Institute (ILRI), Patancheru | International Livestock Research Institute(Nairobi) | International Maize and Wheat Improvement Center (CIMMYT) (Beijing) | International Maize and Wheat Improvement Center (CIMMYT) (Mexico City) | International Maize and Wheat Improvement Center (CIMMYT) (Mexico) | International Maize and Wheat Improvement Center (CIMMYT), Nairobi, Kenya | International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico | International Maize and Wheat Improvement Center (CYMMIT), Mexico | International Maize and Wheat Improvement Center (El Batan) | International Potato Center (CIP) 1895 Avenida La Molina, Lima Peru 12, Lima | International Potato Center (Lima) | International Rice Research Institute (Hyderabad) | International Rice Research Institute (IRRI), IRRI South Asia Hub, ICRISAT (Patancheru) | International Rice Research Institute (IRRI), IRRI South Asia Hub, Patancheru (Hyderabad) | International Rice Research Institute (IRRI),South-Asia Hub,ICRISAT Campus, Patancheru | International Rice Research Institute (IRRI). Hyderabad | International Rice Research Institute (Los Banos) | International Rice Research Institute (Manila) | International Rice Research Institute (Metro Manila) | International Rice Research Institute (Philippines) | International Rice Research Institute, Metro Manila (Los Baños) | International Rice Research Institute, South Asia Hub (Patancheru) | International Rice Research Institute, South Asia Hub, ICRISAT (Patancheru) | International Rice Research Institute, South Asia Hub, ICRISAT, Hyderabad | International Rice Research Institute, South-Asia Hub, (Patancheru) | International Rice Research Institute, South-Asia Hub, ICRISAT Campus (Hyderabad) | International RiceResearchInstitute | International Wheat Genome Sequencing Consortium 2841 NE Marywood Ct, Lee's Summit, MO | Intertek - AgriTech (Elevenborgsvägen) | Ionian University (Argostoli Kephalonia) | Iowa State University (Ames) | Iowa State University(Amens) | Iowa State University(Ames) | Iwate Biotechnology Research Center(Kitakami) | Iwate Biotechnology Research Center, Kitakami (Iwate) | J. Craig Venter Institute(Rockville) | J.Craig Venter Institute(Rockville) | JCVI(Rockville) | JIRCAS(Tsukuba) | JNKVV(Jabalpur) | JNTU | JNTU (Hyderabad) | JNTU(Hyderabad) | JNTUH (Hyderabad) | JNU Campus | Jadavpur University(Kolkata) | James Bradeen University of Minnesota(St. Paul) | James D. Watson Institute of Genome Science (Hangzhou) | James D. Watson Institute of Genome Sciences (Hangzhou) | Jamia Millia Islamia (New Delhi) | Japan International Research Center for Agricultural Sciences(Ibaraki) | JapancJawaharlal Nehru Technological University (Hyderabad) | Jawaharlal Nehru Agricultural University (Jabalpur) | Jawaharlal Nehru Krishi Vishwa Vidyalaya (JNKVV) (Jabalpur) | Jawaharlal Nehru Krishi Vishwa Vidyalaya (JNKVV), Jabalpur | Jawaharlal Nehru Technological University (Hyderabad) | Jawaharlal Nehru Technological University Hyderabad (JNTUH) (Hyderabad) | Jawarharlal Nehru KrishiVishwaVidyalaya (JNKVV) (Jabalpur) | Jiangsu University(Zhenjiang) | Jiangsu Yanjiang Institute of Agricultural Sciences (Nantong) | Johann Wolfgang Goethe - University(Frankfurt am Main) | John Bingham Laboratory (UK) | John Innes Center (Norwich) | John Innes Centre (Norwich) | John Innes Centre(Norwich) | John Innes Centre, Norwich Research Park (Norwich) | Johnson Shoyama Graduate School of Public Policy, University of Saskatchewan, 101 Diefenbaker | Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Vienna | Junagadh Agricultural University (JAU) (Junagadh) | Junagadh Agricultural University (JAU), (Jamnagar) | Junagadh Agricultural University (Jamnagar) | Junagadh Agricultural University (Junagadh) | Junagadh Agricultural University(Junagadh) | Junagadh Agricultural University, (Junagadh) | Junagadh Agricultural University, Jamnagar (Gujarat) | Justus Liebig University Giessen(Giessen) | K.J. Frey Chair in Agronomy at Iowa State University (Iowa) | KDRI(Kisarazu) | Kano Agricultural and Rural Development Authority (KNARDA) (Kano) | Kansas State University(Manhattan) | Kasetsart University (Kamphaeng Saen) | Kazusa DNA Research Institute (Chiba) | Kazusa DNA Research Institute (KDRI) (Chiba) | Kazusa DNA Research Institute(Chiba) | Kazusa DNA Research Institute(Kisarazu) | Kazusa DNA Research Institute, Department of Frontier Research (Kisarazu) | Key Lab of Biology and Genetic Improvement of Oil Crops, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, (CAAS), Wuhan | Key Laboratory for Peanut Biology, Genetics and Breeding, Ministry of Agriculture, Shandong Peanut Research Institute (Qingdao) | Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Wuhan, China | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crop Research Institute (OCRI) of Chinese Academy of Agricultural Sciences (CAAS),Wuhan | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences (Wuhan) | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (CAAS),(Wuhan) | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (Wuhan) | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, (Wuhan) | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, China | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of AgriculturalSciences (CAAS), (Wuhan) | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of AgriculturalSciences, (Wuhan) | Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy ofAgricultural Sciences (Wuhan) | Key Laboratory of Crop Physiology Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China | Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University (Fuzhou) | Key Laboratory of Oil Crops in Huanghuaihai Plains, Ministry of Agriculture and Rural Affairs (Zhengzhou) | Key Laboratory of Peanut Biology and Genetic Improvement, Ministry of Agriculture, Shandong Peanut Research Institute, Wannianquan Road, Licang District, Qingdao | Key Laboratory of Peanut Biology and Genetic Improvement, Shandong Peanut Research Institute, Qingdao | King Abdullah University of Science & Technology (KAUST), Thuwal | Krishi Vigyan Kendra, Rama Krishna Mission Ashram (Ranchi) | Krishidhan Seeds Pvt Ltd (Jalna) | Krishidhan Seeds Pvt. Ltd. (Hyderabad) | Kunming University of Science and Technology (Yunnan) | Kushlan Institute for Tropical Science, Fairchild Tropical Botanic Garden (Coral Gables) | L.H. Bailey Hortorium, Department of Plant Biology, Cornell University (New York) | LMU | Laboratoire Génome et Développement des Plantes, CNRS (Perpignan) | Laboratoire Génome et Développement des Plantes, Université de Perpignan (Perpignan) | Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux, Centre de Recherche de Bel Air (Dakar) | Laboratoire Mixte International LAPSE (Dakar) | Laboratoire de biométrie et Biologie Evolutive, Université Lyon 1 (Villeurbanne) | Laboratory of Applied Entomology, FAST-Dassa), National University of Sciences Technologies Engineering and Mathematics of Abomey (UNSTIM), BP 14 Dassa-Zoumé, Benin | Laboratory of Biotechnology, Genetic Resources and Plant and Animal Breeding (BIORAVE), Faculty of Sciences and Technology of Dassa (FAST-Dassa), National University of Sciences Technologies Engineering and Mathematics of Abomey (UNSTIM), Dassa-Zoume | Laboratory of Translational Research on Transgenic Crops, Department of Botany, University of Calcutta, Kolkata | Lake Zone Agricultural Research Institute, Ukiriguru (Mwanza) | Land Institute(Salina) | Law School, University of Queensland, St Lucia, QLD, Australia | Legume & Oil Crop Research Division (Gyeongnamdo) | Legume Biotechnology Laboratory, School of Agriculture and Biology, Shanghai Jiao Tong University (Shanghai) | Legume Research, Mars Incorporated, Athens | Leibniz Institute Pflanzengenet & Kulturpflanzenforsch(Gatersleben) | Leibniz Institute of Plant Genetics & Crop Plant Research(Gatersleben) | Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) | Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) (Gatersleben) | Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)(Corrensstrasse) | Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Corrensstr | Leibniz Institute of Plant Genetics and Crop Plant Research(Corrensstrasse) | Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany | Leibniz Institute of Plant Genetics and Crops Plant Research (IPK), Gatersleben | Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) (Gatersleben) | Lincoln University (Jefferson City) | Lindsay Lane (USA) | Lira University(Lira) | Lochow-Petkus GmbH(Grimsehlstraße) | Louisiana State University (Baton Rouge) | Louisiana State University (LSU) (Baton Rouge) | Louisiana State University Agricultural Center(Baton Rouge) | Lowa State University(Ames) | Ludwig‐Maximilians‐Universität München (Munich) | M. V. Lomonosov Moscow State University (Moscow) | MACROGEN Inc (Seoul) | MACROGEN, Inc. (Seoul) | MARS-Wrigley(Chicago) | MPKV(Rahuri) | MR DAP, CIRAD(Montpellie) | MU Institute of Data Science and Informatics, University of Missouri, Columbia | Machakos University (Machakos) | Macrogen Millennium Genomics Company (Shenzhen) | Mahatma Phule Agricultural University(Rahuri) | Mahatma Phule Krishi Vidyapeeth (Dhule) | Mahatma Phule Krishi Vidyapeeth (MPKV), (Dhule) | Mahatma Phule Krishi Vidyapeeth (MPKV), (Rahuri) | Mahatma Phule Krishi Vidyapeeth (MPKV), Jalgaon | Mahatma Phule Krishi Vidyapeeth(Rahuri) | Main Oilseeds Research Station, Junagadh Agricultural University (JAU) (Junagadh) | Main Oilseeds Research Station, Junagadh Agricultural University (JAU), (Junagadh) | Main Oilseeds Research Station, Junagadh Agricultural University(JAU), (Junagadh) | Main Oilseeds Research Station, Junagadh Agricultural University, Junagadh, Gujarat | Malviya National Institute of Technology (Jaipur) | Mars Chocolate North America(Hackettstown) | Mars Wrigley Confectionery, Center for Applied Genetic technologies, (Athens) | Mars-Wrigley, Chicago, USA | Max Planck Institute for Molecular Plant Physiology(Potsdam-Golm) | Max Planck Institute for Plant Breeding Research | Max Planck Institute of Molecular Plant Physiology (Potsdam) | Max-Planck-Institute of Molecular Plant Physiology(Potsdam-Golm) | McGill University(Montreal) | Melkassa Agricultural Research Ceneter (Nazret) | Menoufia University | Menoufia University(Sadat) | Metabolon, Inc (Durham) | Michigan State University(East Lansing) | Middle Southern Area Genomics Laboratory, US Department of Agriculture–Agricultural Research Service (Stoneville) | Millennium Genomics Inc (Shenzhen) | Ministry of Rural Development and Food (Argostoli Kephalonia) | Mississippi State University(Mississippi State) | Moderna (Cambridge) | Mohammed V University of Rabat(Rabat) | MolBreeding Biotechnology Co., Ltd. (Shijiazhuang) | MolBreeding Biotechnology Co., Ltd., (Shijiazhuang) | Molecular Systems Biology (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Althanstrasse | Molecular Systems Biology (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Althanstrasse 14, Vienna | Molecular Systems Biology (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Vienna, Austria | Molecular Systems Biology Lab (MOSYS), Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria | Monash Asia Institute, Monash University (Melbourne) | Monsanto Company(Creve Coeur Missouri) | Monsanto Company(Missouri) | Monsanto Research Centre(Bangalore) | Montana BioAgriculture, Inc., Missoula, MT, USA | Montpellier SupAgro | Mountain Research Centre for Field Crops-Khudwani Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (Srinagar) | Mozambique Institute of Agricultural Research (Maputo) | Msekera Research Institute (Chipata) | Murdoch University (Australia) | Murdoch University (Murdoch) | Murdoch University(Murdoch) | Murdoch University(Perth) | Myongji University, (Yongin) | NCGR | NCGR (New Mexico) | NCGR(New Mexico) | NCGR(Santa Fe) | NIAB(Cambridge) | NIH National Cancer Institute(Bethesda) | NIPGR | NRCC(Canada) | NRCPB(New Delhi) | NRGene Ltd(Ness Ziona) | NRGene Ltd., Ness Ziona , Israel | Nagoya University(Nagoya) | Naliendele Agricultural Research Center, Tanzania Agricultural Research Institute, (Mtwara) | Nanchong Academy of Agricultural Sciences (Nanchong) | Nanjing Agricultural University(Nanjing) | Nanjing Forestry University(Nanjing) | Nanjing Normal University (Nanjing) | Nanjing Normal University(Nanjing) | Nanyang Technological University (Singapore) | National Academy of Agricultural Sciences(New Delhi) | National Agri-Food Biotechnology Institute (NABI) (Mohali) | National Agricultural Research Organization (NARO) (Entebbe) | National Agricultural Research Organization (NARO), National Crop Resources Research Institute (NaCCRI) (Namulonge) | National Agricultural Research Organization, National Semi-Arid Resources Research Institute, (Soroti) | National Agriculture and Food Research Organization (NARO), Institute of Crop Science (Tsukuba) | National Agrobiodiversity Center of NAAS, RDA (Suwon) | National Agrobiodiversity Center, National Academy of Agricultural Science(Suwon) | National Bureau of Plant Genetic Resources (NBPGR) (New Delhi) | National Bureau of Plant Genetic Resources(New Delhi) | National Center for Genome Resources (Santa Fe) | National Center for Genome Resources(Santa Fe) | National Center for Genome Resources, Santa Fe (New Mexico) | National Center for Soybean Biotechnology and Division of Plant Sciences, University of Missouri (Columbia) | National Centre for Genome Resources(Santa Fe) | National Centre for Soybean Research, University of Missouri, Columbia | National Engineering Research Center for Information Technology in Agriculture, Beijing | National Foxtail Millet Improvement Center, Minor Cereal Crops Laboratory of Hebei Province, Institute of Millet Crops, Hebei Academy of Agriculture and Forestry Sciences (Shijiazhuang) | National Institute for Agricultural and Food Research and Technology(Madrid) | National Institute for Biotechnology and Genetic Engineering(Faisalabad) | National Institute for Plant Genome Research(New Delhi) | National Institute of Agricultural Botany, (Cambridge) | National Institute of Agrobiological Sciences (Japan) | National Institute of Agrobiological Sciences (Tsukuba) | National Institute of Crop Science (Suwon) | National Institute of Nutrition (Hyderabad) | National Institute of Plant Biotechnology (ICAR), Pusa, New Delhi | National Institute of Plant Genome Research (India) | National Institute of Plant Genome Research (New Delhi) | National Institute of Plant Genome Research, New Delhi | National Institute of the Republic of Serbia (Maxim Gorki) | National Key Laboratory for North China Crop Improvement and Regulation, Hebei Agriculture University, Baoding, Hebei, China | National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, (Wuhan) | National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan | National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China | National Pulses Research Center, Tamil Nadu Agricultural University (TNAU) (Pudukkottai) | National Pulses Research Center, Tamil Nadu Agricultural University (TNAU), (Pudukkottai) | National Research Center on Plant Biotechnology(New Delhi) | National Research Centre on Plant Biotechnology(New Delhi) | National Research Centre on Plant Biotechnology, IARI (New Delhi) | National Research Council Canada (NRC-CNRC), Saskatchewan | National Rice Research Program (Hardinath) | National Semi‐Arid Resources Research Institute (NaSARRI) (Soroti) | National University of Ireland Galway(Galway) | National University of Sciences and Technology(Islamabad) | National University of Sciences(Dassa-Zoume) | Natural Capital and Plant Health, Royal Botanic Gardens Kew, Wakehurst Place, Ardingly (West Sussex) | Natural History Museum, London | Nemours Hospital for Children, Wilmington | New Mexico State University Agricultural Science Center (Clovis) | New Mexico State University(Clovis) | New Mexico State University, Agricultural Science Center (Clovis) | New Mexico State University, Agricultural Science Center at Clovis, New Mexico | New Mexico State University-Agricultural Science Center at Clovis, (New Mexico) | Nextomics Biosciences Institute (Wuhan) | Ngetta Zonal Agricultural Research and Development institute (Lira) | Nigde Omer Halisdemir University (Nigde) | Nigde Omer Halisdemir University(Nigde) | NordGen, Smedjevagen 3, 230 53 Alnarp, Sweden | North Carolina State University(Raleigh) | North China University of Science and Technology (Tangshan) | Northwest A&F University (Yangling) | Novogene Bioinformatics Institute(Beijing) | Novogene Bioinformatics Technology Co., Ltd, (Beijing) | Oak Ridge National Laboratory (USA) | Ohio State University(Wooste,) | Oil Crop Research Institute (OCRI), Chinese Academy of Agricultural Science (CAAS), Wuhan, China | Oil Crops Research Institute (OCRI) of Chinese Academy of Agricultural Sciences (CAAS) (Wuhan) | Oil Crops Research Institute (OCRI) of Chinese Academy of Agricultural Sciences (CAAS), (Wuhan) | Oil Crops Research Institute (OCRI) of the Chinese Academy of Agricultural Sciences (Wuhan) | Oil Crops Research Institute (OCRI), Chinese Academy of Agricultural Sciences (CAAS) (Wuhan) | Oil Crops Research Institute (OCRI), Chinese Academy of Agricultural Sciences (CAAS)(Wuhan) | Oil Crops Research Institute (OCRI), Chinese Academy of Agricultural Sciences (CAAS), Wuhan, China | Oil Crops Research Institute Chinese Academy of Agricultural Sciences (Wuhan) | Oil Crops Research Institute of Chinese Academy of Agricultural Sciences (OCRI-CAAS) (Wuhan) | Oil Crops Research Institute of Chinese Academy of Agricultural Sciences (Wuhan) | Oil Crops Research Institute of Chinese Academy of Agricultural Sciences(Wuhan) | Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (Wuhan) | Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences(Wuhan) | Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, (Wuhan) | Oil Crops Research Institute(Wuhan) | Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China | Oil Crops Research Institute, Fujian Agriculture and Forestry University, Fuzhou | Oilseeds & Bioscience Consulting(Raleigh) | Oilseeds Research Station, MPKV (Jalgaon) | Oilseeds Research Station, Mahatma Phule Krishi Vidyapeeth (MPKV), Jalgaon | Oilseeds Section, School of Genetics and Plant Breeding, Tamil Nadu Agricultural University (TNAU) (Coimbatore) | Oklahoma State University (Stillwater) | Oklahoma State University, Department of Biochemistry and Molecular Biology (Stillwater) | Oklahoma State University, Stillwater (Oklahoma) | Osmania University (Hyderabad) | Osmania University(Hyderabad) | Osmania University(Hyderabad) | Ottawa University (Ottawa) | PAU (Ludhiana) | PAU(Ludhiana) | PJTSAU (Hyderabad) | Pairwise Plants LLC, Durham | Palacký University(Olomouc) | Panjab University (Chandigarh) | Panjabrao Deshmukh Krishi Vidyapeeth(Akola) | Peanut Company of Australia (PCA), Kingaroy, Australia | Peanut Research Center, Crops Research Institute, Guangdong Academy of Agricultural Sciences (Guangzhou) | Peanut Research Institute, Shandong Academy of Agricultural Sciences (Qingdao) | Penn State University (PA) | Penn State University(PA) | Phoenix Bioinformatics, Redwood City (California) | Pigeonpea Breeding, ICAR-IIPR (Kanpur) | Pioneer Hi-Bred Private Limited (Hyderabad) | Plant BioSystems Division, Department of Agricultural, Food and Nutritional Science, University of Alberta (Edmonton) | Plant Biotechnology Center, Central Institute of Temperate Horticulture (CITH) (Srinagar) | Plant Breeding Institute, Faculty of Agriculture and Environment, The University of Sydney (Narrabri) | Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca | Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca | Plant Genetic Resources Conservation Unit, US Department of Agriculture–Agricultural Research Service (Griffin) | Plant Genetics Research Unit, Donald Danforth Plant Science Center, US Department of Agriculture, Agricultural Research Service, Midwest Area (St. Louis) | Plant Genetics Resources Conservation Unit, US Department of Agriculture-Agricultural Research Service (Griffin) | Plant Genome Mapping Laboratory, University of Georgia (Athens) | Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, USA | Plant Genomics Center (Brazil) | Plant Genomics and Breeding Center, Eliseu Maciel School of Agriculture, Federal University of Pelotas (Pelotas) | Plant Genomics and Breeding Institute, Seoul National University (Seoul) | Plant Genomics and Breeding Research Institute, Seoul National University (Seoul) | Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, (Melbourne) | Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, Melbourne, VIC, Australia | Plant Molecular and Cellular Biology Program, Genetic Institute, University of Florida (Gainesville) | Plant Pathology, Jawahar Lal Nehru Krishi Vishwa Vidyalaya (JNKVV) (Jabalpur) | Plant Physiology Lab, Organisms and Systems Biology, Faculty of Biology, University of Oviedo, Oviedo, Spain, | Plant Science Program Research and Development, MARS Chocolate North America (Hackettstown) | Plant Stress Biology, International Centre for Genetic Engineering and Biotechnology (New Delhi) | Plant and Crop Sciences Division, School of Biosciences, University of Nottingham (Loughborough) | Plant and Environmental Sciences, Poole Agricultural Center, Clemson University, Clemson, SC, United States | Polish Academy of Sciences(Poznan) | Polytechnic University of Marche(Ancona) | Premas Life Sciences, Bengaluru, India | Professor Jayashankar Telangana State Agricultural University (Hyderabad) | Professor Jayashankar Telangana State Agricultural University (PJTSAU), Rajendranagar, Hyderabad, Telangana State | Professor Jayashankar Telangana State Agricultural University (Rajendranagar) | Professor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad | Professor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad, Telangana | Professor Jayashankar Telangana State Agricultural University-RARS, Palem | Professor Jayashankar Telangana State Agricultural University-RARS, Warangal | Professor JayashankarTelangana State Agricultural University (Hyderabad) | Punjab Agricultural University (Ludhiana) | Punjab Agricultural University(Ludhiana) | Punjab Agricultural University, Ludhiana | Punjab Agricultural University, Ludhiana, Punjab | Purdue University(Indiana) | Purdue University(West Lafayette) | Qingdao Agricultural University(Qingdao ) | Qingdao Agricultural University(Qingdao) | Qinghai Academy of Agricultural and Forestry Sciences (Xining) | Qinghai University (Xining) | Queensland Alliance for Agriculture and Food Innovation, Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane | Queensland Alliance for Agriculture and Food Innovation, The University of Queensland (Brisbane) | Queensland University of Technology (Brisbane) | RAK College of Agriculture (Sehore) | RAK College of Agriculture(Sehore) | RAU-Agricultural Research Station(Durgapura) | RK University(Rajkot) | RMIT University(Melbourne) | RMIT University, Melbourne, VIC 3000, Australia | RVSKVV(Sehore) | RVSKVV-RAK College of Agriculture (Sehore) | Rafi Amhad Kidwai (RAK) College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (RVSKV) (Sehore) | Rajasthan Agricultural Research Institute (Durgapura) | Rajasthan Agricultural Research Institute(Durgapura) | Rajendra Prasad Central Agricultural University (Pusa) | Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (Gwalior) | Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (RVSKVV), RAK College of Agriculture (RAKCA), Sehore , Madhya Pradesh | Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya(Gwalior) | Rani Lakshmi Bai Central Agricultural University (Jhansi) | Rani Lakshmi Bai Central Agricultural University(Jhansi) | Rani Lakshmi Bai Central Agricultural University(Uttar Pradesh) | Rani Lakshmi Bai Central Agricultural University, Jhansi, India | Rauh Clemson University(Clemson) | Regional Agricultural Research Station (Nandyal) | Regional Agricultural Research Station (RARS), Acharya NG Ranga Agricultural University (ANGRAU), (Tirupati) | Regional Agricultural Research Station(Kurnool) | Regional Agricultural Research Station, Achariya NG Ranga Agricultural University, Tirupati,Andhra Pradesh | Regional Agricultural Research Station, Acharya NG Ranga Agricultural University (ANGRAU) (Tirupati) | Regional Agricultural Research Station, Acharya NG Ranga Agricultural University (ANGRAU), (Tirupati) | Regional Agricultural Research Station, Acharya NG Ranga Agricultural University, Tirupati | Regional Agricultural Research Station, Lam Farm, Guntur, Andhra Pradesh | Regional Agricultural Research Station, Professor Jayashanker Telangana State Agricultural University, Palem | Regional Agricultural Research Station, Professor Jayashanker Telangana State Agricultural University, Warangal | Regional Agricultural Research Station, University of Agricultural Sciences, Kalaburagi, Karnataka | Regional Agriculture Research Station, NARC (Bara) | Reno Pontarollo Genome Prairie(Saskatoon) | Research Institute for Agriculture and Life Sciences, Seoul National University (Seoul) | Research Policy Bureau, R&D Performance Evaluation & Management Division (Wansan-gu) | Rice Breeding Platform, International Rice Research Institute (Los Banos) | Rice Research Institute, Guangdong Academy of Agricultural Sciences, (Guangzhou) | Rice University (Houston) | Rothamsted Research, Harpenden, United Kingdom | Royal Botanic Gardens, Kew, Richmond, Surrey | Royal Holloway University of London(Surrey) | S.R.T.M. University(Dnyanteerth) | SDA ARS, Crop Protection and Management Research Unit(Tifton) | SKUAST-Kashmir (Budgam) | SKUAST-Kashmir (Shuhama) | SKUAST-Kashmir (Sopore) | SKUAST-Kashmir(Kashmir) | SPRI(Qingdao) | SRUC (Scotland’s Rural College), Peter Wilson Building (Edinburgh) | SRUC, West Mains Road, Kings Buildings, Edinburgh | Sabanci University | Sam Higginbottom University of Agriculture, Technology and Sciences (SHUATS) (Allahabad) | Sandra Knapp Natural History Museum(London) | Saurashtra University (Rajkot) | Savanah Agricultural Research Institute (SARI) (Tamale) | Savannah Agricultural Research Institute (SARI) (Tamale) | School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal (Pietermaritzburg) | School of Agriculture and Environment & Institute of Agriculture, The University of Western Australia (Crawley) | School of Agriculture and Environment and Institute of Agriculture, University of Western Australia (Crawley) | School of Agriculture and Environment, The University of Western Australia (Crawley) | School of Agriculture and Environment, The University of Western Australia (Perth) | School of Agriculture and Environment, University of Western Australia (Crawley) | School of Agriculture and Food Sciences, The University of Queensland (Brisbane) | School of Agriculture and Food Sciences, University of Queensland (Brisbane) | School of Agriculture and Food Sciences, University of Queensland, St Lucia (Queensland) | School of Agriculture and the Melbourne School of Engineering, University of Melbourne, Australia | School of Agriculture, Food and Wine, The University of Adelaide (Adelaide) | School of Agriculture, Food and Wine, University of Adelaide, Waite Campus (Glen Osmond) | School of Agriculture, Food and Wine, University of Adelaide,Glen Osmond | School of Agriculture, Forestry and Food Engineering, Yibin University (Yibin) | School of Applied Sciences, Health Innovations Research Institute, RMIT University (Melbourne) | School of Applied Sciences, RMIT University (Victoria) | School of Bioinformatics and Biotechnology, D.Y. Patil University (Mumbai) | School of Biological Sciences and Inst. of Agriculture, The Univ. of Western Australia, Crawley, WA, Australia | School of Biological Sciences and Institute of Agriculture, The University of Western Australia, (Perth) | School of Biological Sciences, The University of Western Australia (Crawley) | School of Biological Sciences, The University of Western Australia (Perth) | School of Biological Sciences, The University of Western Australia (UWA), Crawley, WA, Australia | School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia | School of Biological Sciences, The University of Western Australia, Perth | School of Biosciences, University of Birmingham (Birmingham) | School of Biotechnology and Bioinformatics, D.Y. Patil University (Navi Mumbai) | School of Computational & Integrative Sciences, Jawaharlal Nehru University (New Delhi) | School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi | School of Integrative Plant Science, Cornell University (Ithaca) | School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China | School of Life Science, TsingHua University (Beijing) | School of Life Sciences and Center for Genomics and Computational Biology, North China University of Science and Technology (Tangshan) | School of Life Sciences and Center for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong (Shatin) | School of Life Sciences, Sun Yat-Sen University (Guangzhou) | School of Life Sciences, Swami Ramanand Teerth Marathwada University (Nanded) | School of Life Sciences, The Chinese University of Hong Kong (Shatin) | School of Life Sciences, University of Hyderabad, Hyderabad, India | School of Life Sciences/Center for Genomics and Bio-computing, North China University of Science and Technology, Tangshan, Hebei, China | School of Medicine and Pharmacology, Royal Perth Hospital Unit, The University of Western Australia (Perth) | School of Molecular Science, The University of Western Australia (Perth) | School of Natural Sciences, Environmental Futures Research Institute, Griffith University (Queensland) | School of Natural Sciences, Environmental Futures Research Institute, Gri�th University, Brisbane | School of Plant Biology and Institute of Agriculture, The Univ. of Western Australia (Crawley) | School of Plant Biology and Institute of Agriculture, The University of Western Australia (Crawley) | School of Plant Biology and Institute of Agriculture, The University of Western Australia (Perth) | School of Plant Biology and Institute of Agriculture, The University of Western, Australia, Crawley, WA, Australia | School of Plant Biology and Institute of Agriculture, University of Western Australia (Crawley) | School of Plant Biology and Institute of Agriculture, University of Western Australia (Perth) | School of Plant Biology and Institute of AgricultureThe University of Western Australia (Crawley) | School of Plant Biology and UWA Institute of Agriculture, The University of Western Australia (Crawley) | School of Plant Biology and the Institute of Agriculture, The University of Western Australia (Crawley) | School of Plant Biology and the Institute of Agriculture, The University of Western Australia (Perth) | School of Plant Biology and the Institute of Agriculture, The University of Western Australia (UWA) (Crawley) | School of Plant Biology, Faculty of Science, The University of Western Australia (Perth) | School of Plant Biology, The Institute of Agriculture, University of Western Australia, University of Western Australia (Crawley) | School of Plant Biology, The University of Western Australia (Crawley) | School of Plant Biology, The University of Western Australia (Perth) | School of Plant Biology, University of Western Australia (Crawley) | School of Science, The Pangenomics Group, RMIT University (Melbourne) | Scotland’s Rural College (SRUC), (Edinburgh) | Scottish Crop Research Institute | Scottish Crop Research Institute(Dundee) | Section of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States | SeedWorks International Pvt Ltd, Hyderabad | Selian Agricultural Research Institute (Arusha) | Senegalese Agricultural Research Institute (Dakar) | Seoul National University (Seoul) | Seoul National University(Seoul) | ShanDong Shofine Seed Technology Co Ltd (Shandong) | Shandong Academy of Agricultural Sciences (Jinan) | Shandong Academy of Agricultural Sciences (Ji’nan) | Shandong Academy of Agricultural Sciences (Qingdao) | Shandong Academy of Agricultural Sciences / Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology (Jinan) | Shandong Academy of Agricultural Sciences(Qingdao) | Shandong Academy of Agricultural Sciences, Biotechnology Research Center (Jinan) | Shandong Academy of Agricultural Sciences, Biotechnology Research Center, (Jinan) | Shandong Academy of Agricultural Sciences, Jinan | Shandong Academy of Agricultural Sciences, Peanut Research Institute, (Qingdao) | Shandong Normal University (Jinan) | Shandong Normal University (Ji’nan) | Shandong Peanut Research Institute (Qingdao) | Shandong Peanut Research Institute (SPRI), Qingdao, China | Shandong Peanut Research Institute(Qingdao) | Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences (Qingdao) | Shandong Shofine Seed Company (Jiaxiang) | Shanghai Center for Plant Stress Biology, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai | Shanghai Igenebank Biotechnology Company Limited (Shanghai) | Shanghai Institute for Advanced Immunochemical Studies (ShanghaiTech) | Shanxi Agricultural University(Taiyuan) | Shenzhen Key Laboratory for Orchid Conservation and Utilization, National Orchid Conservation Center of China and Orchid Conservation and Research Center of Shenzhen (Shenzhen) | Shenzhen Millennium Genomics, Inc. (Shenzhen) | Sher-E-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K), Wadura Campus, Sopore, Kashmir | Sher-e-Kashmir University of Agricultural Science and Technology(Kashmir) | Sher-e-Kashmir University of Agricultural Sciences & Technology (SKUAST) (Kashmir) | Sher-e-Kashmir University of Agricultural Sciences & Technology of Kashmir(Jammu & Kashmir) | Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (Khudwani) | Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir(Srinagar) | Sher-e-Kashmir University of Agricultural Sciences and Technology(Srinagar) | Siberian Branch of the Russian Academy of Sciences | Sichuan Academy of Agricultural Sciences (Chengdu) | Sichuan Agricultural University(Chengdu) | Sinana Agricultural Research Ceneter (Robe) | Sitaram Bhartia Institute of Science and Research(New Delhi) | Skolkovo Institute of Science and Technology (Moscow) | Society for Health and Demographic Surveillance (Suri) | South Asia Hub, International Rice Research Institute (IRRI), Hyderabad | South Australian Research And Development Institute (Adelaide) | South Australian Research and Development Institute (Adelaide) | South Australian Research and Development Institute(Hartley Grove) | South China Agricultural University (Guangzhou) | South China Peanut Sub-Center of National Center of Oilseed Crops Improvement(Guangzhou) | South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (Guangzhou) | South China Peanut Sub-center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou) | South China University of Technology(Guangzhou) | Southern Cross Plant Science, Southern Cross University (Lismore) | Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Nanchang, China | Soybean Genomics and Improvement Lab, US Department of Agriculture – Agricultural Research Service, Beltsville, MD, USA | Sreenidhi Institute of Science and Technology (Hyderabad) | Sri Karan Narendra Agriculture University (SKNAU), (Durgapura) | St. John’s Medical College(Bengaluru) | State Agricultural Biotechnology Centre Centre for Crop and Food Innovation, Murdoch University, Murdoch | State Agricultural Biotechnology Centre, Centre for Crop & Food Innovation, Food Futures Institute, Murdoch University, Murdoch | State Agricultural Biotechnology Centre, Centre for Crop Research Innovation, Murdoch University, Murdoch | State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, Murdoch | State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch University, Murdoch | State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch University, Murdoch, Western Australia, Australia | State Agricultural Biotechnology Centre, Crop & Food Innovation Centre, Food Futures Institute, Murdoch University (Murdoch) | State Agricultural Biotechnology Centre, Crop Research Innovation Centre, Food Futures Institute, Murdoch University, Murdoch | State Agricultural Biotechnology Ctr., Crop Research Innovation Ctr., Food Futures Inst., Murdoch Univ., Murdoch | State Key Laboratory of Agricultural Genomics (BGI-Shenzhen) | State Key Laboratory of Agricultural Genomics (Shenzhen) | State Key Laboratory of Agricultural Genomics, China National GeneBank, BGI-Shenzhen, Shenzhen | State Key Laboratory of Ecological Pest Control for Fujian and Taiwan crops, Fujian Agriculture and Forestry University, Fuzhou (Fujian) | State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Science (CAAS), Hangzhou | State Level Biotechnology Centre, Mahatma Phule Agricultural University (Rahuri) | Statiunea de Cercetare Dezvoltare Pentru Legumicultura(Bacau) | Stockbridge School of Agriculture, University of Massachusetts Amherst (Amherst) | Suri District Hospital (Suri) | Sustainable Intensification Innovation Lab, Kansas State University (Manhattan) | Swedish University of Agricultural Sciences (Sweden) | Swedish University of Agricultural Sciences (Uppsala) | Swinburne University of Technology(Hawthorn) | Syngenta Seeds Inc | TARI, Maruku (Bukoba) | TARI, Naliendele (Mtwara) | TARI, Uyole (Mbeya) | Tamil Nadu Agricultural University (Aliyarnagar) | Tamil Nadu Agricultural University (Coimbatore) | Tamil Nadu Agricultural University (TNAU) (Coimbatore) | Tamil Nadu Agricultural University (TNAU), Aliyarnagar | Tamil Nadu Agricultural University (TNAU), Coimbatore | Tamil Nadu Agricultural University(Madurai) | Tamil Nadu Agricultural University, Coimbatore,Tamil Nadu | Tamworth Agricultural Institute(Calala) | Tanzania Agricultural Research Institute (TARI) (Arusha) | Tanzania Agricultural Research Institute(Dodoma) | Tanzania Agricultural Research Institute, Dodoma | Tanzania Agricultural Research Institute, Dodoma, Tanzania | Tanzania Agricultural Research Institute-Naliendele, Mtwara, Tanzania | Tata Consultancy Services(Hyderabad) | Technical University of Munich | Technische Universitaet Muenchen, Plant Biodiversity Research (Freising) | Texas A & M AgriLife Research, (Lubbock) | Texas A&M AgriLife Research (Lubbock) | Texas A&M University | The Agricultural Genome Center, National Academy of Agricultural Science, Rural Development Administration (Suwon) | The Broad Institute (Cambridge) | The Chinese University of Hong Kong (Hong Kong) | The Department of Agriculture and Food, Western Australia (South Perth) | The Department of Primary Industries and Regional Development, South Perth (Western Australia) | The Huck Institute of the Life Sciences, The Pennsylvania State University, University Park, PA | The Institut d' Economie Rural (IER) (Kayes) | The Institut de l'Environnement et de Recherches Agricoles (INERA) (Ouagadougou) | The Institute of Agriculture, The University of Western Australia (Crawley) | The Institute of Agriculture, University of Western Australia (Crawley) | The International Institute of Tropical Agriculture (IITA) (Ibadan) | The International Institute of Tropical Agriculture, Ibadan, | The James Hutton Institute, Errol Road, Invergowrie, Dundee | The John Bingham Laboratory (UK) | The John Bingham Laboratory, Lawrence Weaver Road, Cambridge | The John Bingham Laboratory, NIAB (Cambridge) | The Leibniz Institute of Plant Genetics and Crop Plant Research (Gatersleben) | The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) (Germany) | The Leibniz Institute of Plant Genetics and Crop Plant Research, (Gatersleben) | The Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr.,Seeland | The Leibniz-Institute of Plant Genetics and Crop Plant Research(Gatersleben) | The National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences (Beijing) | The Ohio State University (Columbus) | The Pangenomics Group, School of Science, RMIT University, Melbourne 3083, Australia | The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus (Glen Osmond) | The Queensland Alliance for Agriculture and Food Innovation, The University of Queensland (Brisbane) | The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh (Easter Bush) | The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh (Midlothian) | The Roslin Institute and Royal(Dick) School of Veterinary Studies,The University of Edinburgh (Easter Bush) | The Roslin Institute, The University of Edinburgh, Edinburgh, Scotland | The Sainsbury Laboratory | The Sainsbury Laboratory, Norwich Research Park, Norwich, UK | The Samuel Roberts Noble Foundation | The UWA Institute of Agriculture and School of Agriculture and Environment, The University of Western Australia (Perth) | The UWA Institute of Agriculture, The University of Western Australia (Crawley) | The UWA Institute of Agriculture, The University of Western Australia (Perth) | The UWA Institute of Agriculture, The University of Western Australia, Perth | The UWA Institute of Agriculture, The University ofWestern Australia, Perth | The UWA Institute of Agriculture, Unitversity of Western Australia, Perth | The UWA Institute of Agriculture, University of Western Australia (Perth) | The UWA Institute of Agriculture, University of Western Australia, Perth | The University of Adelaide, (Adelaide) | The University of Burdwan (Burdwan) | The University of Burdwan(Burdwan) | The University of Burdwan(West Bengal) | The University of Florida, Department of Agronomy (Gainesville) | The University of Georgia (Athens) | The University of Georgia (Athens, GA) | The University of Georgia Tifton Campus(Tifton) | The University of Georgia(Athens) | The University of Georgia, College of Agricultural and Environmental Sciences (Athens) | The University of Georgia, Department of Plant Pathology (Tifton) | The University of Queensland (Queensland) | The University of Queensland(Brisbane) | The University of Queensland(St Lucia) | The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, St. Lucia,, Australia | The University of Sydney(Camperdown) | The University of Vermont (UVM)(Burlington) | The University of Western Australia (Crawley) | The University of Western Australia (Perth) | The University of Western Australia (UWA) (Crawley) | The University of Western Australia (UWA) (Perth) | The University of Western Australia Institute of Agriculture, The University of Western Australia (Crawley) | The University of Western Australia(Crawley) | The University of Western Australia(Perth) | The University of Western Australia, School of Plant Biology and the Institute of Agriculture (Crawley) | Tomooka National Institute of Agrobiological Sciences(Tsukuba) | Tuskegee Univ(Tuskegee) | Tuskegee University | Tuskegee University (Tuskegee) | Tuskegee University(Tuskegee ) | Tuskegee University(Tuskegee) | U.S. Dep. of Agriculture–Agricultural Research Service, Soybean Genomics and Improvement Lab., Beltsville | U.S. Department of Agriculture (Pullman) | U.S. Department of Agriculture, Washington State University (Pullman) | UAE University(Al Ain) | UAS-Dharwad Regional Agricultural Research Station (Bijapur) | UAS-Dharwad Regional Agricultural Research Station (Vijayapura) | UAS-Raichur Agricultural Research Station (Gulbarga) | UAS-Raichur Agricultural Research Station (Kalaburagi) | UCB | UCB(Brasila) | UCL Genetics Institute, Gower Street, London | UGC-Center of Advanced Study, Department of Botany, The University of Burdwan (Burdwan) | UMR AGAP(Montpellier Cedex) | US Department of Agriculture-Agricultural Research Service, Crop Genetics and Breeding Research Unit (Tifton) | US Department of Agriculture-Agricultural Research Service, Crop Protection and Management Research Unit (Tifton) | US Department of Agriculture-Agricultural Research Service, Plant Genetic Resources Conservation Unit (Griffin) | USDA FSIS OFO, Dallas | USDA(Beltsville) | USDA-ARS | USDA-ARS (Tifton) | USDA-ARS Biosciences Research Lab(Fargo) | USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames | USDA-ARS Crop Protection and Management Research Unit (CPMRU), Tifton, GA, USA | USDA-ARS Crop Protection and Management Research Unit (Tifton) | USDA-ARS Hard Winter Wheat Genetics Research Unit (Manhattan) | USDA-ARS National Laboratory for Genetic Resources Preservation, 1111 South Mason St, Fort Collins, CO | USDA-ARS PGRCU (Griffin) | USDA-ARS US Horticultural Research Laboratory (Fort Pierce) | USDA-ARS(Ames) | USDA-ARS(Pullman) | USDA-ARS(Tifton) | USDA-ARS, Cereal Disease Laboratory, University of Minnesota (St Paul) | USDA-ARS, Crop Genetics and Breeding Research Unit (Tifton) | USDA-ARS, Crop Genetics and Breeding Research Unit, (Tifton) | USDA-ARS, Crop Genetics and Breeding Research Unit, Tifton, USA | USDA-ARS, Crop Protection and Management Research Unit (Tifton) | USDA-ARS, Crop Protection and Management Research Unit, (Tifton) | USDA-ARS, Crop Protection and Management Research Unit, Tifton | USDA-ARS, Cropping Systems Research Laboratory (Lubbock) | USDA-ARS, Cropping Systems Research Laboratory, Lubbock | USDA-ARS, Genomics and Bioinformatics Research Unit, Stoneville | USDA-ARS, Inst. for Genomic Diversity, Dep. Plant Breeding & Genetics, Cornell University (Ithaca) | USDA-ARS, Ithaca (New York) | USDA-ARS, National Peanut Research Laboratory, Dawson | USDA-ARS, Prosser (Washington) | USDA-ARS, Southern Regional Research Center, New Orleans | USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville | USDA-ARS, U.S. Horticultural Research Laboratory (Ft. Pierce) | USDA-ARS, US Horticultural Laboratory (Fort Pierce) | USDA-ARS, WSU Pullman (Washington) | USDA-ARS, Western Regional Plant Introduction Station, Washington State University (Pullman) | USDA-ARS-CSRL, (Lubbock) | USDA-Agricultural Research Service(Tifton) | USDA-Agricultural Research Services(Tifton) | USDA‐ARS, Subtropical Horticultural Research Station (Florida) | USDA‑ARS, Washington State University (Pullman) | USDA–ARS | UWA Institute of Agriculture, The University of Western Australia (Crawley) | UWA Institute of Agriculture, University of Western Australia (Crawley) | UWA School of Agriculture and Environment, The University of Western Australia (Crawley) | UWA(Crawley) | Ulrich Schurr Forschungszentrum Jülich(Jülich) | United Arab Emirates University (Al-Ain) | United Arab Emirates University(Abu Dhabi) | United Arab Emirates University(Al Ain) | United Arab Emirates University(Al-Ain) | United Nations University (Tokyo) | United States Department of Agriculture (USDA) (Washington) | United States Department of Agriculture – Agricultural Research Service, Crop Protection and Management Research Unit (Tifton) | United States Department of Agriculture, Agricultural Research Service Crop Protection and Management Research Unit (Tifton) | United States Department of Agriculture-Agricultural Research Service(Ames) | United States Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY | United States Department of Agriculture-Agriculture Research Service (ARS), Edward T. Schafer Agricultural Research Center, Fargo | United States Department of Agriculture-Agriculture Research Service (ARS), U.S. Arid Land Agricultural Research Center, Maricopa | United States Department of Agriculture—Agricultural Research Service (USDA-ARS) (Tifton) | Univ. de Colima(Colima) | Univ. de Guadalajara(Guadalajara) | Universidad Autónoma de Chapingo(Texcoco) | Universidad de Colima(Colima) | Universidad de Quintana Roo (Quintana Roo) | Universidade Cato´lica de Brası´lia(Brası´lia) | Universidade Católica de Brasília (UCB) (Brasília) | Universidade Católica de Brasília(Brasília) | Universidade de Brasília (Brasilia) | Universidade de Brası´lia(Brasilia) | University College London(London) | University Laval (Quebec) | University Ouaga (Ouagadougou) | University for Development Studies(Tamale) | University of Abomey-Calavi(Abomey-Calavi) | University of Adelaide | University of Adelaide (Glen Osmond) | University of Adelaide(Adelaide) | University of Adelaide(Glen Osmond) | University of Adelaide(Glenosmond) | University of Adelaide(Urrbrae) | University of Adelaide, Australia and School of Agriculture (Adelaide) | University of Agricultural Makurdi (Makurdi) | University of Agricultural Science (Dharwad) | University of Agricultural Sciences (Dharwad) | University of Agricultural Sciences (Raichur) | University of Agricultural Sciences (UAS) (Dharwad) | University of Agricultural Sciences (UAS), (Dharwad) | University of Agricultural Sciences (UAS), (Raichur) | University of Agricultural Sciences (UAS), Dharwad | University of Agricultural Sciences (UAS), Dharwad, India | University of Agricultural Sciences (UAS)-Dharwad, Dharwad | University of Agricultural Sciences and Technology of Jammu(Jammu) | University of Agricultural Sciences(Bangalore) | University of Agricultural Sciences(Dharwad) | University of Agricultural Sciences(Raichur) | University of Agricultural Sciences, ARS-Gulbarga (Raichur) | University of Agricultural Sciences, Dharwad, India | University of Agricultural Sciences, Raichur, Karnataka | University of Agricultural Sciences–Bangalore (Bangalore) | University of Agriculture (Faisalabad) | University of Agriculture (Makurdi) | University of Agriculture Faisalabad (Faisalabad) | University of Agriculture(Faisalabad) | University of Alabama in Huntsville (USA) | University of Arizona (AZ) | University of Arizona (Tucson) | University of Arizona(Tucson) | University of Basilicata(Potenza) | University of Birmingham(Edgbaston) | University of Bologna (Bologna) | University of Bologna(Viale Fanin ) | University of Brasilia(Brasilia) | University of Brasília | University of Brasília(Brasilla) | University of Brasília(Brasília) | University of Brasília(Brazil) | University of Brasília, Institute of Biological Sciences, Campus Darcy Ribeiro (Brasília) | University of British Columbia | University of British Columbia, 3083 Alma St, Vancouver | University of Calcutta (Kolkata) | University of California (Davis) | University of California (UCR)(Riverside) | University of California (USA) | University of California Davis(California) | University of California Davis(Davis) | University of California Riverside (Riverside) | University of California(Davis) | University of California(Davis) | University of California(Davis, CA) | University of California(Riverside ) | University of California(Riverside) | University of California, Riverside, CA | University of California-Davis (Davis) | University of California-Davis(UC-Davis) | University of California–Davis (Davis) | University of Chinese Academy of Sciences (Beijing) | University of Connecticut(Storrs) | University of Copenhagen(Copenhagen) | University of Copenhagen(Denmark) | University of Copenhagen(Frederiksberg) | University of Cordoba(Cordoba) | University of Crete(Heraklion) | University of Córdoba (Córdoba) | University of Córdoba (Spain) | University of Delhi South Campus | University of Delhi South Campus(New Delhi) | University of Edinburgh (Midlothian) | University of Exeter (Exeter) | University of Florida (Gainesville) | University of Florida(Gainesville) | University of Florida, Gainesville (Florida) | University of Frankfurt(Frankfurt am Main) | University of Frankfurt(Frankfurt) | University of Georgia (Athens) | University of Georgia (Tifton) | University of Georgia (UGA) (Tifton) | University of Georgia (USA) | University of Georgia(Athens) | University of Georgia(Tifton) | University of Georgia, (Athens) | University of Georgia, Athens (Georgia) | University of Georgia, Center for Applied Genetic Technologies, (Athens) | University of Georgia, Department of Plant Pathology (Tifton) | University of Georgia, Department of Plant Pathology, (Tifton) | University of Glasgow(Glasgow) | University of Guelph, Rm 316, Crop Science Bldg, 50 Stone Rd E, Guelph, ON, N1G 2W1, Canada | University of Haifa, (Haifa) | University of Helsinki Helsinki Finland | University of Hohenheim(Stuttgart) | University of Hyderabad | University of Hyderabad(Gachibowli) | University of Illinois(Urbana) | University of Jerusalem(Rehovot) | University of Kalyani(Kalyani) | University of Kashmir (Srinagar) | University of Kentucky(Lexington) | University of KwaZulu-Natal (Pietermaritzburg) | University of KwaZulu-Natal, African Center for Crop Improvement (Pietermaritzburg) | University of KwaZulu-Natal, African Center for Crop Improvement, Scottsville, Pietermaritzburg | University of Leeds(Leeds) | University of Malawi (Blantyre) | University of Maryland, MD | University of Milano (Milan) | University of Missouri (Columbia) | University of Missouri (Missouri) | University of Missouri (USA) | University of Missouri(Columbia) | University of Missouri, Division of Plant Sciences, 25 Agriculture Lab Bldg, College of Agriculture Food and Natural Resources, University of Missouri, Columbia, MO | University of Missouri, National Center for Soybean Biotechnology (Columbia) | University of Missouri, National Center for 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Scientifique (Grenoble) | Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive (Lyon) | Université Nationale d’Agriculture(Kétou) | Université de Montpellier(Montpellier) | Université de Montpellier, INRA, LEPSE (Montpellier) | Université de Toulouse (Toulouse) | Upland Crop Division, National Institute of Crop Science, Rural Development Administration (Suwon) | Uppsala University (Uppsala) | Vasantrao Naik Marathwada Krishi Vidyapeeth (VNMKV) (Parbhani) | Vellore Institute of Technology(Vellore) | Vidyasagar University(West Bengal) | Vienna International Centre(Vienna) | Vienna Metabolomics Center (VIME), University of Vienna | Vienna Metabolomics Center (VIME), University of Vienna (Vienna) | Vienna Metabolomics Center (VIME), University of Vienna, Althanstrasse | Vienna Metabolomics Center (VIME), University of Vienna, Vienna | Vienna Metabolomics Center (VIME), University of Vienna, Vienna, Austria | Vienna Metabolomics Center, University of Vienna, Vienna | Vietnamese Academy Agriculture Science | Vijaya Raje Scindia Krishi Vishwa Vidyalaya(Gwalior) | Virginia Tech(Virginia) | Visva-Bharati (Santiniketan) | Visva-Bharati (Shantiniketan) | Visva-Bharati, Santiniketan (West Bengal) | Wageningen University | Wageningen University & Research(Wageningen) | Wageningen University and Research(Wageningen) | Wageningen University(Droevendaalsesteeg) | Wageningen University(Wageningen) | Washington State University (Pullman) | Washington State University(Pullman) | West Africa Center for Crop Improvement (WACCI), University of Ghana, Accra, Ghana | West Africa Centre for Crop Improvement (WACCI), University of Ghana (Legon) | Western Sydney University(Penrith) | World Vegetable Center (AVDRC) (Messa Yaoundé) | World Vegetable Center, South Asia (Hyderabad) | World Vegetable Center, South and Central Asia (Hyderabad) | Wuhan University(Wuhan) | Xiangyang Academy of Agricultural Sciences (Xiangyang) | Yangzhou University(Yangzhou) | Yunnan Academy of Agricultural Sciences (Kunming) | Zhejiang Agriculture and Forestry University(Hangzhou) | Zhongkai University of Agriculture and Engineering (Guangzhou) | Zonal Agricultural Research Station(Karnataka) | Zonal Agricultural Research Station, University of Agricultural Sciences - Raichur | iCarbonX (Shenzhen) | wheat physiology at the International Maize and Wheat Improvement Center | Área de Mejora y Biotecnología, IFAPA Centro “Alameda del Obispo” (Córdoba)
Number of items: 3610.

1Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (GDAAS), Guangzhou

Liu, H and Liang, X and Lu, Q and Li, H and Liu, H and Li, S and Varshney, R K and Hong, Y and Chen, X (2020) Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition. Scientific Reports (TSI), 10 (1). pp. 1-12. ISSN 2045-2322

A&M University (Tallahassee)

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

AAFC(Winnipeg)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

ACPFG(Adelaide)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

AGAP, Université Montpellier, CIRAD, INRA, Montpellier SupAgro (Montpellier)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

ANGRAU (Guntur)

Sameer Kumar, C V and Satheesh Naik, S J and Mohan, N and Saxena, R K and Varshney, R K (2017) Botanical Description of Pigeonpea [Cajanus Cajan (L.) Millsp.]. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 17-29. ISBN 978-3-319-63795-2

ANGRAU - Regional Agricultural Research Station (Nandyal)

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ANGRAU Regional Agricultural Research Station (Nandyal)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

ANGRAU Regional Agricultural Research Station(Nandyal)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

ANGRAU(Hyderabad)

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Anuradha, C and Gaur, P M and Pande, S and Gali, K K and Ganesh, M and Kumar, J and Varshney, R K (2011) Mapping QTL for resistance to botrytis grey mould in chickpea. Euphytica, 182 (1). pp. 1-9. ISSN 0014-2336

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

ANGRAU(Tirupati)

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

ARC Centre of Excellence in Plant Energy Biology and School of Molecular Sciences, The University of Western Australia, Perth

Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372

AVRDC -The World Vegetable Center (Patancheru)

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

AVRDC -The World Vegetable Center (Shanhua)

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

Aberystwyth University (UK)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Academy of Scientific and Innovative Research(Ghaziabad)

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

Acharya N G Ranga Agricultural University(Tirupati)

Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X

Acharya N G Ranga Agricultural University-RARS, Tirupati

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

Acharya N. G. Ranga Agricultural University (ANGRAU) (Guntur)

Shruthi, H B and Hingane, A J and ReddiSekhar, M and Srivarsha, J and Bhosle, T M and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P and Sameer Kumar, C V (2017) Super early pigeonpea varities and hybrids: New intervener for maximized, time specific dry land production. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Acharya N.G. Ranga Agricultural University(Bapatla)

Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811

Acharya N.G. Ranga Agricultural University(Guntur)

Pamala, P J and Jayalakshmi, R S and Vemana, K and Naidu, G M and Varshney, R K and Sudini, H K (2023) Prevalence of groundnut dry root rot (Macrophomina phaseolina (Tassi) Goid.) and its pathogenic variability in Southern India. Frontiers in Fungal Biology, 4. 01-16. ISSN 2673-6128

Acharya N.G. Ranga Agricultural University(Maruteru)

Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811

Acharya NG Ranga Agricultural University (ANGRAU) (Tirupati)

Janila, P and Radhakrishnan, T and Murali, T V and Bera, S K and Dobariya, K L and Nigam, S N and Varshney, R K and Pandey, M K and Manohar, S S and Manivannan, N and Vasanthi, R P (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, October 10 - 12, 2018, Stellenbosch, South Africa.

Acharya NG Ranga Agricultural University (Guntur)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Africa Rice Center (AfricaRice), Mbe Research Station, Bouaké, 01 BP 2511 Bouaké, Côte d’Ivoire

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

African Center for Crop Improvement, University of KwaZulu-Natal (Pietermaritzburg)

Kaoneka, S R and Saxena, R K and Silim, S N and Odeny, D A and Ganga Rao, N V P R and Shimelis, H A and Siambi, M and Varshney, R K (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154. ISSN 1439-0523

African Centre for Crop Improvement, School of Agricultural, Earth and Environmental Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Pietermaritzburg, South Africa

Daudi, H and Shimelis, H and Mathew, I and Oteng‐Frimpong, R and Ojiewo, C and Varshney, R K (2020) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

African Centre for Crop Improvement, School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal (Scottsville)

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

AgResearch Consultants, Shingler Little River Road (Sumner)

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

AgResearch Forage, Science, Grasslands Research Centre, AgResearch, Palmerston North

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Agharkar Research Institute(Pune)

Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Agri and Agri Food, Canada

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

Agri-Science Queensland, Department of Agriculture & Fisheries (DAF), Warwick

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Agricultural Genome Center, National Academy of Agricultural Science (Suwon)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Agricultural Research Center-Hays, Kansas State University, (Hays)

Serba, D D and Yadav, R S and Varshney, R K and Gupta, S K and Govindaraj, M and Srivastava, R K and Gupta, R and Perumal, R and Tesso, T T (2020) Genomic Designing of Pearl Millet: A Resilient Crop for Arid and Semi-arid Environments. In: Genomic Designing of Climate-Smart Cereal Crops. Springer, Cham, Switzerland, pp. 221-286. ISBN 978-3-319-93381-8

Agricultural Research Ltd (Troubsko)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Agricultural Research Organization, Plant Sciences Institute (Rishon LeZion)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Agricultural Research Service(Manhattan)

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Agricultural Research Station (ARS) (Tandur) Professor Jayashankar Telangana State Agricultural University (PJTSAU) (Hyderabad)

Singh, V K and Khan, A W and Saxena, R K and Sinha, P and Kale, S M and Parupalli, S and Kumar, V and Chitikineni, A and Vechalapu, S and Sameer Kumar, C V and Sharma, M and Ghanta, A and Yamini, K N and Muniswamy, S and Varshney, R K (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal. pp. 1-9. ISSN 1467-7644

Agricultural Research Station (ARS) – Gulbarga, University of Agricultural Sciences (UAS) (Karnataka)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Agricultural Research Station (ARS)(Gulbarga), University of Agricultural Sciences (UAS)(Raichur)

Singh, V K and Khan, A W and Saxena, R K and Sinha, P and Kale, S M and Parupalli, S and Kumar, V and Chitikineni, A and Vechalapu, S and Sameer Kumar, C V and Sharma, M and Ghanta, A and Yamini, K N and Muniswamy, S and Varshney, R K (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal. pp. 1-9. ISSN 1467-7644

Agricultural Research Station (ARS)-Gulbarga, University of Agricultural Sciences (UAS) (Raichur)

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644

Agricultural Research Station (ARS)—Badnapur, Vasantrao Naik Marathwada Krishi Vidyapeeth (VNMKV), Parbhani, Maharashtra

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

Agricultural Research Station (ARS)—Kalaburagi, University of Agricultural Sciences (UAS), Raichur , Karnataka

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

Agricultural Research Station (UAS-Raichur), Gulbarga, Karnataka

Saxena, R K and Kale, S and Mir, R R and Mallikarjuna, N and Yadav, P and Das, R R and Molla, J and Sonnappa, M and Ghanta, A and Narasimhan, Y and Rathore, A and Kumar, C V S and Varshney, R K (2019) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics (TSI), 133 (3). pp. 737-749. ISSN 0040-5752

Agricultural Research Station of UAS-Raichur (Gulbarga)

Samineni, S and Varshney, R K and Sajja, S and Thudi, M and Jayalakshmi, V and Vijayakumar, A and Mannur, D M (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Agricultural Research Station(Badnapur)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Agricultural Research Station, ANGRAU (Kadiri)

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Agricultural Research Station, Acharya NG Ranga Agricultural University (ANGRAU), (Tirupati)

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Agricultural Research Station, Acharya NG Ranga Agricultural University (ANGRAU), Kadiri

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

Agricultural Research Station, Fort Valley State University (Fort Valley)

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Agricultural Research Station, MPKV (Sangli)

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Agricultural Research Station, MPKV, K. Digraj, Sangli

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

Agricultural Research Station, University of Agricultural Sciences (Gulbarga)

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

Agricultural Research Station, University of Agricultural Sciences (UAS)-Raichur (Kalaburagi)

Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743

Agricultural Research, Ltd (Troubsko)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Agricultural Science Center at Clovis, New Mexico State University (Clovis)

Varshney, R K and Pandey, M K and Puppala, N (2017) The Peanut Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-63933-8

Agricultural University of Athens (Athens)

Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109

Agriculture Institute Iranian Research Organization for Science and Technology, Tehran

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Agriculture Research Ltd(Troubsko)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Agriculture and Agri-Food Canada (Saskatoon)

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Agriculture and Agri-Food Canada, Beaverlodge Research Farm, Beaverlodge (Alberta)

Khedikar, Y and Pandey, M K and Sujay, V and Singh, S and Nayak, S N and Klein-Gebbinck, H W and Sarvamangala, C and Mukri, G and Garg, V and Upadhyaya, H D and Nadaf, H L and Gowda, M V C and Varshney, R K and Bhat, R S (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding (TSI), 38(1) (7). pp. 1-12. ISSN 1380-3743

Agriculture and Forestry University(Chitwan)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Agriculture and Forestry University, Rampur (Chitwan)

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Agronomy Department, IFAS, University of Florida (Gainesville)

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Agronomy Department, University of Florida (Gainesville)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Agronomy Department, University of Florida, Gainesville

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Akhuwat Faisalabad Institute of Research Science and Technology (Faisalabad)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Albany State University(Albany)

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

All India Co-ordinated Research Project on Pigeonpea, University of Agricultural Sciences, GKVK (Bengaluru)

Mallikarjuna, N and Saxena, R K and Byre Gowda, M and Varshney, R K (2017) Wide Crossing Technology for Pigeonpea Improvement. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 31-39. ISBN 978-3-319-63795-2

All India Coordinated Research Project (AICRP) on Chickpea, Indian Council of Agricultural Research (ICAR) (New Delhi)

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Alliance for Green Revolution in Africa (Lilongwe)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Alliance of Bioversity International and CIAT, Kampala, Uganda

Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395

Alliance of Bioversity International and CIAT, Nairobi

Templer, N and Akpo, E and Vernooy, R and Ojiewo, C O and Njuguna-Mungai, E and Gekanana, R and Varshney, R K (2021) Assessment of Grain Legumes and Dryland Cereals Seed Value Chains in Uganda. Working Paper. ICRISAT.

Alliance of Bioversity International and CIAT, Wageningen University and Research, PBWageningen, The Netherlands

Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395

Alliance of Bioversity International and CIAT, c/o Wageningen University & Research, Wageningen

Ndossi, J and Akpo, E and Ojiewo, C O and Ringo, J and Kongola, E and Vernooy, R and Muricho, G and Lukurugu, G A and Makoye, L N and Tabo, R and Varshney, R K (2021) Delineating investment opportunities for stakeholders in sorghum seed systems: a logit model perspective. Agriculture & Food Security (TSI), 10 (1). pp. 1-13. ISSN 2048-7010

Alliance of Bioversity International and CIAT, c/o Wageningen University and Research Center, Wageningen, Netherlands

Kimbi, T G and Akpo, E and Kongola, E and Ojiewo, C O and Vernooy, R and Muricho, G and Ringo, J and Lukurugu, G A and Varshney, R K and Tabo, R (2020) A probit Analysis of Determinants of Adoption of Improved Sorghum Technologies Among Farmers in Tanzania. Journal of Agricultural Science (TSI), 13 (1). pp. 73-87. ISSN 1916-9752

American University in the Emirates (Dubai)

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Amity School of Biotechnology, Amity University (Mumbai)

Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737

Amity University (Jaipur)

Sachdeva, S and Bharadwaj, C and Singh, S and Roorkiwal, M and Sharma, V and Singh, A and Varshney, R K (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences (TSI), 89 (5). pp. 834-841. ISSN 0019-5022

Amity University (Mumbai)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Ananda Chandra College (Jalpaiguri)

Majhi, K and Let, M and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. Environmental Research (TSI), 223. ISSN 0013-9351

Andhra Pradesh Agricultural University(Anantapur)

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

Angel Yeast Co., Ltd, (Hubei)

Luo, H and Pandey, M K and Zhi, Y and Zhang, H and Xu, S and Guo, J and Wu, B and Chen, H and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Sudini, H and Varshney, R K and Lei, Y and Liao, B and Jiang, H (2020) Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Areka Agricultural Reserch Ceneter (Areka)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland (Brisbane)

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide (Urrbrae)

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus (Glen Osmond)

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

Australian Centre for Plant Functional Genomics, University of Adelaide (Adelaide)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Australian Centre for Plant Functional Genomics, University of Queensland (St. Lucia)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

Australian Grains Genebank (Horsham)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

BGI (Shenzhen)

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

BGI Research(Qingdao)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

BGI Research(Shenzhen)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

BGI Shenzhen (Shenzhen)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

BGI-Americas(Cambridge)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

BGI-Australia(Queensland)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

BGI-Fuyang, BGI-Shenzhen (Fuyang)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

BGI-Qingdao (Qingdao)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

BGI-Qingdao, BGI-Shenzhen (Qingdao)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

BGI-Shenzhen (Beijing)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

BGI-Shenzhen (Qingdao)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

BGI-Shenzhen (Shenzhen)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

BGI-Shenzhen(Shenzhen)

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

BGI-Shenzhen, (Shenzhen)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

BGI-Shenzhen, Shenzhen, (China)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

BIOGENOM Laboratory, Faculty of Sciences and Technology of Dassa (FAST-Dassa), National University of Sciences Technologies Engineering and Mathematics of Abomey (UNSTIM), Dassa-Zoumé, Benin

Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758

BS Abdur Rahman University, (Chennai)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Banaras Hindu University(Varanasi)

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Banaras Hindu University(Varanasi)

Kassa, M T and Penmetsa, R V and Carrasquilla-Garcia, N and et al, . (2012) Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives. PLoS ONE, 7 (6). pp. 1-13. ISSN 1932-6203

Barkatullah University(Bhopal)

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Dubey, A (2011) Development of genomic resources in pigeonpea (Cajanus cajan L.Millspaugh). PHD thesis, Barkatullah University.

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Bayer BioScience Pvt. Ltd.

Singh, R and Sharma, P and Varshney, R K and Sharma, S K and Singh, N K (2008) Chickpea Improvement: Role of Wild Species and Genetic Markers. Biotechnology & Genetic Engineering Reviews, 25. pp. 267-314.

Bayer Crop Science, Crop Science Division (Morrisville)

Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644

Bayer Crop Science, GA

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Bayer Crop Sciences (Chesterfield)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Bayer CropScience, Research Triangle Park

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Bayer CropScience, St. Louis

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Bayero University of Kano (BUK) (Kano)

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Baylor College of Medicine (Houston)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Baylor College of Medicine(Houston)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Beijing Genomics Institute (BGI) (Shenzhen)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

Beijing Genomics Institute(BGI) (Shenzhen)

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

Beijing Genomics Institute(Shenzhen)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Beijing Genomics Institute-Shenzhen, Shenzhen

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Bharathidasan University (Tiruchchirappalli)

Srikanth, S and Saxena, R K and Rao, M V and Varshney, R K and Mallikarjuna, N (2015) Development of a new CMS system in pigeonpea utilizing crosses with Cajanus lanceolatus (WV Fitgz) van der Maesen. Euphytica, 204 (02). pp. 289-302. ISSN 1573-5060

Bharathidasan University (Tiruchirappalli)

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology (TSI), 18(1) (29). pp. 1-18. ISSN 1471-2229

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2017) High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Bidhan Chandra Krishi Viswavidyalaya (India)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Bihar Agricultural University (Sabour)

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Saxena, K B and Saxena, R K and Sharma, S and Sameer Kumar, C V and Sultana, R and von Wettberg, E B and Varshney, R K (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica (TSI), 214 (12). pp. 1-20. ISSN 0014-2336

Bihar Agricultural University, Sabour, Bhagalpur, Bihar

Saxena, R K and Hake, A and Bohra, A and Khan, A W and Hingane, A and Sultana, R and Singh, I P and Naik, S J S and Varshney, R K (2020) A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Bioclues Organization (Hyderabad)

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Bioinformatics, STgenetics, Navasota

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Biological Sciences and International Center for Tropical Botany, Florida International University (Miami)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Biological Sciences, University of Southampton (Southampton)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Bionano Genomics, San Diego, CA, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Biosciences, College of Life and Environmental Sciences, University of Exeter (Exeter)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Bioserve Biotechnology Pvt Ltd, Hyderabad

Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472

Biostatistics, Corteva Agrisciences, (Johnston)

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Biotechnology Research Center, Shandong Academy of Agricultural Sciences (SAAS), Jinan, China

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Biotechnology Research Center, Shandong Academy of Agricultural Sciences and Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology (Jinan)

Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X

Biotechnology Research Center, Shandong Academy of Agricultural Sciences(Jinan)

Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X

Biotechnology Research Center, Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences (Shandong)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Biotechnology and Crop Genetics, Crops for the Future (Kuala Lumpur)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Biotechnology/Molecular Breeding, AVRDC-The World Vegetable Center (Tainan)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Bioversity International, Parc Scientifique Agropolis II, 34397, Montpellier, Cedex

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Bond Life Sciences Center, University of Missouri, Columbia

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Borlaug Institute for South Asia (BISA),CIMMYT, (Jabalpur)

Kumar, R and Janila, P and Vishwakarma, M K and Khan, A W and Manohar, S S and Gangurde, S S and Variath, M T and Shasidhar, Y and Pandey, M K and Varshney, R K (2019) Whole‐genome resequencing‐based QTL ‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal(TSI). pp. 1-12. ISSN 1467-7644

Botanical Garden(Rethymnon)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Boyce Thompson Institute for Plant Research

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Broad Institute of MIT and Harvard (Cambridge)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Bu-Ali Sina University(Hamedan)

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Burdwan Medical College (Burdwan)

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

CCDM Bioinformatics, Centre for Crop Disease Management, Curtin University (Bentley)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

CCDM Bioinformatics, Centre for Crop and Disease Management, Curtin University (Perth)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

CCS Haryana Agricultural University (Hisar)

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

CCS Haryana Agricultural University(Haryana)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

CCS Haryana Agricultural University(Hisar)

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Gupta, P K and Varshney, R K (2005) Cereal Genomics: An Overview. In: Cereal Genomics. Springer Netherlands, Netherlands, pp. 1-18. ISBN 978-1-4020-2359-0

Schulman, A H and Gupta, P K and Varshney, R K (2005) Organization of Retrotransposons and Microsatellites in Cereal Genomes. In: Cereal Genomics. Springer Netherlands, pp. 83-118. ISBN 978-1-4020-2359-0

CCS University(Meerut)

Gupta, P K and Varshney, R K (2013) Cereal Genomics II. Springer Netherlands. ISBN 978-94-007-6401-9

Gupta, P K and Varshney, R K (2013) Cereal Genomics: Excitements, challenges and opportunities. In: Cereal Genomics II. Springer, Netherlands, pp. 1-9. ISBN 978-94-007-6400-2

CGIAR Generation Challenge Programme (GCP), CIMMYT (Mexico)

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

CGIAR Generation Challenge Programme(Mexico)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

CGIAR Generation Challenge Programme, c/o CIMMYT (Mexico)

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

CIAT (Cali)

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

CIAT (Kampala)

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

CIAT(Arusha)

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

CIAT(Cali)

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

CIMMYT(Mexico)

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372

Kulwal, P L and Thudi, M and Varshney, R K (2013) Crop breeding for sustainable agriculture, genomics interventions in. In: Sustainable Food Production. Springer, New York, pp. 501-513. ISBN 978-1-4614-5796-1

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Varshney, R K and Ribaut, J M and Buckler, E S and et al, . (2012) Can genomics boost productivity of orphan crops? Nature Biotechnology, 30. pp. 1172-1176. ISSN 1087-0156

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Varshney, R K and May, G D (2012) Next-generation sequencing technologies: opportunities and obligations in plant genomics. Briefings in Functional Genomics, 11 (1). pp. 1-2. ISSN 2041-2647

Gowda, M V C and Bhat, R S and Sujay, V and Kusuma, P and Kumari, Varsha and Varshney, R K and Bhat, S (2011) Characterization of AhMITE1 transposition and its association with the mutational and evolutionary origin of botanical types in peanut (Arachis spp.). Plant Systematics and Evolution, 291 (3-4). pp. 153-158.

Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.

Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.

Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26. pp. 371-380. ISSN 1572-9788

Bohra, A and Mallikarjuna, N and Saxena, K B and Upadhyaya, H D and Vales, I and Varshney, R K (2010) Harnessing the Potential of Crop Wild Relatives through Genomics Tools for Pigeonpea Improvement. Journal of Plant Biology, 37 (1). pp. 83-98.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799

Saxena, R K and Prathima, C and Saxena, K B and Hoisington, D A and Singh, N K and Varshney, R K (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.). Plant Breeding, 129 (2). pp. 142-148.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Flowers, T J and Gaur, P M and Gowda, C L L and Krishnamurthy, L and Samineni, S and Siddique, K H M and Turner, N C and Vadez, V and Varshney, R K and Colmer, T D (2010) Salt sensitivity in chickpea. Plant, Cell and Environment , 33 (4). pp. 490-509. ISSN 0140-7791

Saxena, R K and Saxena, K B and Kumar, R V and Hoisington, D A and Varshney, R K (2010) Simple sequence repeat-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance to Fusarium wilt and sterility mosaic disease. Plant Breeding, 129. pp. 135-141. ISSN 0179-9541

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

Cuc, L M and Mace, E S and Crouch, J H and Quang, V D and Long, T D and Varshney, R K (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (55). pp. 1-11.

Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105

CIMMYT, Mexico

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

CIMMYT-China office, Beijing 100081, Beijing

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

CIP(Lima)

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

CIRAD(Montpeillar)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

CIRAD(Montpeillar)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Gautami, B and Fonce´ka, D and Pandey, M K and Sujay, V and Bhanuprakash, A and Shah, T and Nigam, S N and Hoisington, D A and Varshney, R K and et al, . (2012) An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.). Plos ONE-Biotechnology, 7 (7). pp. 1-11.

Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

CJ Food R&D (Suwon)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

CNR-Consiglio Nazionale delle Ricerche, Istituto di Biologia e Biotecnologia Agraria (Milan)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

CREA, Research Centre for Genomics and Bioinformatics, via San Protaso 302, Fiorenzuola d’Arda

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

CSAUAT(Kanpur)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

CSIR Institute of Microbial Technology (Chandigarh)

Halder, U and Banerjee, A and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). pp. 1-2. ISSN 2169-8287

CSIR, Institute of Microbial Technology (Chandigarh)

Banerjee, A and Halder, U and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2016) Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. Genome Announcements, 4 (6). pp. 1-2. ISSN 2169-8287

CSIR-Central Salt and Marine Chemicals Research Institute(Bhavnagar)

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

CSIR-Savanna Agricultural Research Institute, Tamale, Ghana

Daudi, H and Shimelis, H and Mathew, I and Oteng‐Frimpong, R and Ojiewo, C and Varshney, R K (2020) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

CSIRO (Atherton)

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

CSIRO (Canberra)

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

CSIRO (Dutton Park)

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

CSIRO Agriculture, Centre for Environment and Life Sciences (Wembley)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

CSIRO Plant Industry (Wembley)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

CSIRO Plant Industry(Wembley)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

CSIRO Plant Industry, Center for Environment and Life Sciences (Perth)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

CSIRO(Canbera)

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

CSIRO(Perth)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

CSIRO–Plant Industry(Canberra)

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

Cash Crops Research Institute (Nanning)

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S and Zheng, Y and Ma, S and Tang, R and Varshney, R K and Zhuang, W (2016) Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnol Journal, 14 (2). pp. 682-698. ISSN 2349-6738

Catholic University of Brasília

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

Center for Applied Genetic Technologies and Institute of Plant Breeding, Genetics & Genomics, The University of Georgia (Athens)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Center for Applied Genetic Technologies, Mars Wrigley Confectionery (Athens)

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Center for Applied Genetic Technologies, The University of Georgia (UGA) (Athens)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Center for Applied Genetic Technologies, University of Georgia (Athens)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome. Compendium of Plant Genomes . Springer International Publishing, pp. 1-4. ISBN 978-3-319-63795-2

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome: An Overview. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-63795-2

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621

Center for Applied Genetic Technologies, University of Georgia (UGA) (Athens)

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Nayak, S N and Pandey, M K and Jackson, S A and Liang, X and Varshney, R K (2017) Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-147. ISBN 978-3-319-63933-8

Center for Applied Genetic Technologies, University of Georgia, Athens (Georgia)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Center for Crop Germplasm Resources at the Institute of Crop Sciences, Chinese Academy of Agriculture Sciences

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Center for Genomics and Biotechnology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps, Ministry of Education, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuz

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Center for Plant Systems Biology(Plovdiv)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Center for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Center for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong (Shatin)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Center of Excellence in Genomics & Systems Biology, (Hyderabad)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Central Arid Zone Research Institute (Jodhpur)

Gaur, P M and Singh, M K and Samineni, S and Sajja, S and Jukanti, A K and Kamatam, S and Varshney, R K (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209. pp. 253-260. ISSN 1573-5060

Central Arid Zone Research Institute(Jodhpur)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Central Rainfed Upland Rice Research station, National Rice Research Institute (Hazaribagh)

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Central Research Institute for Dryland Agriculture (Santoshnagar, Hyderabad)

Reddy, P S and Jogeswar, G and Rasineni, G K and Maheswari, M and Reddy, A R and Varshney, R K and Kavi Kishor, P B (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94. pp. 104-113. ISSN 0981-9428

Central Research Institute for Jute and Allied Fibres(West Bengal)

Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437

Central Tribal University of Andhra Pradesh(Vizianagaram)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Central University of Karnataka(Gulbarga)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Central University of Karnataka, Gulbarga, India

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Centre Régional d’Excellence Sur Les Céréales Sèches et Cultures Associées, Institut Sénégalais de Recherches Agricoles (ISRA), Bambey, Senegal

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

Centre for AgriBioscience(Melbourne)

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Centre for Agricultural Bioinformatics, Indian Agricultural Statistics Research Institute (ICAR) (New Delhi)

Iquebal, M A and Soren, K R and Gangwar, P and Shanmugavadivel, P S and Aravind, K and Singla, D and Jaiswal, S and Jasrotia, R S and Chaturvedi, S K and Singh, N P and Varshney, R K and Rai, A and Kumar, D (2017) Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. Frontiers in Plant Science, 8 (958). pp. 1-12. ISSN 1664-462X

Centre for Agricultural Research, Hungarian Academy of Sciences, Agricultural Institute (Martonvásár)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Centre for Biosystems Genomics(Wageningen)

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Centre for Biotechnology, Institute of Science & Technology, JNTU (Hyderabad)

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

Centre for Biotechnology, Jawaharlal Nehru Technological University (Hyderabad)

Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382

Centre for Carbon Water and Food, Faculty of Agriculture and Environment, The University of Sydney (Brownlow Hill)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Centre for Cellular and Molecular Biology

Aggarwal, R K and Hendre, P S and Varshney, R K and Bhat, P R and Krishnakumar, V and Singh, L (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. TAG Theoretical and Applied Genetics, 114 (2). pp. 359-372. ISSN 1432-2242

Centre for Cellular and Molecular Biology (CSIR), (Hyderabad)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

Centre for Cellular and Molecular Biology(Hyderabad)

Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452

Varshney, R K and Thudi, M and Aggarwal, R K and Borner, A (2007) Genic molecular markers in plants: Development and applications. In: Genomics-Assisted Crop Improvement. Springer Netherlands, Dordrecht, The Netherlands, pp. 13-29. ISBN 978-1-4020-6294-0

Centre for Commercial Law Studies (UK)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Centre for Crop Health, Institute for Life Sciences and the Environment, University of Southern Queensland, (Toowoomba)

Zwart, R S and Thudi, M and Channale, S and Manchikatla, P K and Varshney, R K and Thompson, J P (2019) Resistance to Plant-Parasitic Nematodes in Chickpea: Current Status and Future Perspectives. Frontiers in Plant Science (TSI), 10 (966). pp. 1-14. ISSN 1664-462X

Centre for Crop Science, QAAFI, University of Queensland, Brisbane, Queensland, Australia

Varshney, R K and Godwin, I D and Mohapatra, T and Jones, J D G and McCouch, S R (2019) A SWEET solution to rice blight. Nature Biotechnology (TSI), 37 (11). pp. 1280-1282. ISSN 1087-0156

Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane

Bohra, A and Chand Jha, U and Godwin, I D and Varshney, R K (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal (TSI). pp. 1-18. ISSN 1467-7644

Centre for Integrative Legume Research, School of Agriculture and Food Sciences, The University of Queensland, Brisbane (Queensland)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Centre for Integrative Legume Research, University of Queensland (Brisbane)

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Centre for Modern Indian Studies, University of Goettingen (Goettingen)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, India

Govintharaj, P and Maheswaran, M and Blümmel, M and Sumathi, P and Vemula, A K and Rathore, A and Sivasubramani, S and Kale, S M and Varshney, R K and Gupta, S K (2021) Understanding Heterosis, Genetic Effects, and Genome Wide Associations for Forage Quantity and Quality Traits in Multi-Cut Pearl Millet. Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Centre for Plant Genetics and Breeding, The University of Western Australia (Crawley)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Centre for Plant Genetics and Breeding,The University of Western Australia (Crawley)

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

Centre for Plant Molecular Biology and Biotechnology, Tamil Nadu Agricultural University (TNAU), Coimbatore

Jaganathan, D and Bohra, A and Thudi, M and Varshney, R K (2020) Fine mapping and gene cloning in the post-NGS era: advances and prospects. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1791-1810. ISSN 0040-5752

Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds (Leeds)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Centre for Plant Sciences, University of Leeds, (Leeds)

Kumar, R and Pandey, M K and Roychoudhry, S and Nayyar, H and Kepinski, S and Varshney, R K (2019) Peg Biology: Deciphering the Molecular Regulations Involved During Peanut Peg Development. Frontiers in Plant Science (TSI), 10 (1289). pp. 1-17. ISSN 1664-462X

Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Centre of the Region Haná for Biotechnological and Agricultural Research(Olomouc)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Centro Internacional de Agricultura Tropical (CIAT), Km 17 Recta Cali-Palmira

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Centro International de Agricultura Tropical (Colombia)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Centro Universitario de Ciencias Exactas e Ingenierías(Guadalajara)

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Centro de Investigación en Matemáticas(Guanajuato)

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional(Guanajuato)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Centurion University of Technology and Management(Odisha)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Ch Charan Singh University (Meerut)

Gupta, P K and Varshney, R K (2005) Cereal Genomics. Springer. ISBN 978-90-481-6646-6

Ch Charan Singh University(Meerut)

Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.

Ch. Charan Singh University(Meerut)

Varshney, R K and Balyan, H S and Langridge, P (2006) Wheat. In: Cereals and Millets. Genome Mapping and Molecular Breeding in Plants, 1 . Springer-Verlag , Berlin, Heidelberg, Germany, pp. 79-134. ISBN 978-3-540-34031-7

Chaudhary Charan Singh Haryana Agricultural University (CCSHAU), (Hisar)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Chaudhary Charan Singh Haryana Agricultural University (Hisar)

Singh, S and Gupta, S K and Thudi, M and Das, R R and Anil Kumar, V and Garg, V and Varshney, R K and Rathore, A and Pahuja, S K and Yadav, D V (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet. Crop Science (TSI), 58 (6). pp. 2379-2390. ISSN 0011-183X

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

Chaudhary Charan Singh University(Meerut)

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X

Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523

Chaudhary Sarwan Kumar Himachal Pradesh Krishi Vishvavidyalaya (CSKHPKV), Regional Station (Dhaulakuan)

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Chiba University(Japan)

Azhaguvel, P and Saraswathi, D V and Sharma, A and Varshney, R K (2006) Methodological Advancement in Molecular Markers to Delimit the Gene(s) for Crop Improvement. In: Floriculture, ornamental and plant biotechnology. Global Science Books, Isleworth, UK, pp. 460-469. ISBN 4-903313-00-X

Chibas and Department of Agriculture and Environmental Sciences, Quisqueya University, Port-au-Prince, Haiti

Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372

China Agricultural University (China)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

China Agricultural University(Beijing)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

China Agricultural University, Beijing

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

China National Gene Bank (CNGB) (Shenzhen)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

China National GeneBank (CNGB) (Shenzen)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

China National GeneBank (Shenzhen)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

China National GeneBank, BGI-Shenzhen (Shenzhen)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Chinese Academy of Agricultural Science(Zhejiang)

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Chinese Academy of Agricultural Sciences (Beijing)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Chinese Academy of Agricultural Sciences (Hangzhou)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Chinese Academy of Agricultural Sciences(Beijing)

Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

Chinese Academy of Agricultural Sciences(Hangzhou)

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

Chinese Academy of Agricultural Sciences(Wuhan)

Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X

Chinese Academy of Agricultural Sciences, Beijing

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Chinese Academy of Agricultural Sciences, Oil Crops Research Institute (Wuhan)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Chinese Academy of Sciences (Beijing)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Chongqing Academy of Animal Sciences(Chongqing)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Christ College(Rajkot)

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Christian-Albrechts-University(Kiel)

Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X

Clemson University

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Cold Spring Harbor Lab(New York)

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Cold Spring Harbor Laboratory(Harbor)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Colegio de Postgraduados(Montecillos)

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Colegio de Postgraduados, Mexico, Mexico

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

Colegio de Postgraduados, Montecillo (Texcoco)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

College of Agricultural Sciences, Southern Illinois University (Carbondale)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

College of Agriculture Indore(Indore)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

College of Agriculture and Biotechnology, Zhejiang University (Hangzhou)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

College of Agriculture and Forestry Science, Linyi University, Middle of Shuangling Road, Lanshan District, Linyi

Wang, X and Xu, P and Ren, Y and Yin, L and Li, S and Wang, Y and Shi, Y and Li, H and Cao, X and Chi, X and Yu, T and Pandey, M K and Varshney, R K and Yuan, M (2020) Genome-wide identification of meiotic recombination hot spots detected by SLAF in peanut (Arachis hypogaea L.). Scientific Reports (TSI), 10 (1). ISSN 2045-2322

College of Agriculture, South China Agricultural University (Guangzhou)

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY, 21 (3). pp. 491-498. ISSN 1814–9596 (In Press)

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. International Journal of Agriculture and Biology. pp. 1-8. ISSN 1814–9596 (In Press)

Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X

College of Agriculture, University of Agricultural Sciences (Dharwad)

Bhat, R S and Kolekar, R M and Asha, B and Sukruth, M and Shirasawa, K and Sujay, V and Khedikar, Y and Sarvamangala, C and Gowda, M V C and Motagi, B N and Varshney, R K (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

College of Agriculture, University of Agricultural Sciences – Dharwad, Vijayapur

Pattanashetti, S K and Pandey, M K and Naidu, G K and Vishwakarma, M K and Singh, O K and Shasidhar, Y and Boodi, I H and Biradar, B D and Das, R R and Rathore, A and Varshney, R K and Morris, B (2020) Identification of quantitative trait loci associated with iron deficiency chlorosis resistance in groundnut ( Arachis hypogaea ). Plant Breeding (TSI), 139 (4). pp. 790-803. ISSN 0179-9541

College of Agriculture, University of Agricultural Sciences, Dharwad (UAS-D), Vijayapur

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China

Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752

College of Agronomy and Biotechnology, Southwest University (Chongqing)

Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640

College of Agronomy, Jiangxi Agricultural University, Nanchang, China

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

College of Biology and Environmental Science, Nanjing Forestry University (Nanjing)

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

College of Bioscience and Biotechnology, Qiongzhou University (Sanya)

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

College of Biosciences and Biotechnology, National Cheng Kung University (Tainan)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

College of Computer and Information Science, Southwest University (Chongqing)

Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640

College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou

Khan, S A and Chen, H and Deng, Y and Chen, Y and Zhang, C and Cai, T and Ali, N and Mamadou, G and Xie, D and Guo, B and Varshney, R K and Zhuang, W (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics (TSI), 133 (7). pp. 2239-2257. ISSN 0040-5752

College of Crop Sciences, Fujian Agriculture and Forestry University (Fuzhou)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

College of Food Science and Engineering of Qingdao Agricultural University (Qingdao)

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

College of Food Science and Engineering, Qingdao Agricultural University (Qingdao)

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

College of Life Science of China Jiliang University(Hangzhou)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

College of Life Science, China Jiliang University (CJLU), Hangzhou

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

College of Life Science, National Tsing Hua University (Hsin Chu)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

College of Life Science, Qingdao Agricultural University (Qingdao)

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

College of Life Science, Qingdao Agricultural University (Shandong)

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

College of Life Science, Qingdao Agricultural University, Qingdao (Shandong)

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

College of Life Science, South China Agricultural University (Guangzhou)

Zhu, F and Han, J and Liu, S and Chen, X and Varshney, R K and Liang, X (2014) Cloning, Expression Pattern Analysis and Subcellular Localization of Resveratrol Synthase Gene in Peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 5 (24). pp. 3619-3631. ISSN 2158-2750

College of Life Sciences, China Jiliang University, Hangzhou, China

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

College of Life Sciences, Shaanxi Normal University, Xi’an, China

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

College of Life Sciences, Shandong Normal University (Jinan)

Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X

College of Life Sciences, Zhejiang University (Hangzhou)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

College of Plant Protection, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China

Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou

Khan, S A and Chen, H and Deng, Y and Chen, Y and Zhang, C and Cai, T and Ali, N and Mamadou, G and Xie, D and Guo, B and Varshney, R K and Zhuang, W (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics (TSI), 133 (7). pp. 2239-2257. ISSN 0040-5752

College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou (Fujian)

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S B and Varshney, R K and Zhuang, W J (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian, China

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

College of Tropical Biology and Agronomy, Hainan Tropical Marine University (Sanya)

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

Colorado State University(Fort Collins)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Commonwealth Scientific and Industrial Research Organisation (Brisbane)

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Corn Insects and Crop Genetics Research Unit, US Department of Agriculture Agricultural Research Service (Ames)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Corn Insects and Crop Genetics Research Unit, US Department of Agriculture–Agricultural Research Service (Ames)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Corn Insects and Crop Genetics Research Unit, US Department of Agriculture–Agricultural Research Service, Ames, IA, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Cornell University

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Cornell University (Ithaca)

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

Cornell University (New York)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Cornell University(Ithaca)

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Varshney, R K and Graner, A and Sorrells, M E (2005) Genomics-assisted breeding for crop improvement. Trends in Plant Science, 10 (12). pp. 621-630. ISSN 1360-1385

Cornell University(New York)

Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173

Cornell University, Biotechnology Building (Ithaca)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Cornell University, Ithaca (New York)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Cornell University, Ithaca, NY, USA

Varshney, R K and Godwin, I D and Mohapatra, T and Jones, J D G and McCouch, S R (2019) A SWEET solution to rice blight. Nature Biotechnology (TSI), 37 (11). pp. 1280-1282. ISSN 1087-0156

Cornell University, Ithaca, NY 14853, USA

Bohra, A and Pareek, S and Jones, M and Jha, U C and Naik, S J S and Kaashyap, M and Patil, P G and Maurya, A K and Saxena, R K and Varshney, R K (2019) Genomic Interventions to Improve Resilience of Pigeonpea in Changing Climate. In: Genomic Designing of Climate-Smart Pulse Crops. Springer Nature, Switzerland, pp. 107-134. ISBN 978-3-319-96931-2

Corporate R&D, LG Chem (Seoul)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Corteva Agriscience (Hyderabad)

Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642

Corteva Agriscience (Johnston)

Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642

Corteva Agriscience, Indianapolis

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Crop Cultivation and Physiological Innovation team at the Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Crop Development Centre, Plant Sciences, University of Saskatchewan (Saskatoon)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

Crop Development Centre, University of Saskatchewan (Saskatoon)

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

Crop Genetics and Breeding Research Unit, US Department of Agriculture Agricultural Research Service (Tifton)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Crop Genetics and Breeding Research Unit, USDA-ARS (Tifton)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Crop Genetics and Breeding Research Unit, USDA-ARS, (Tifton)

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Crop Genetics and Breeding Research Unit, USDA-ARS, Tifton, USA

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Crop Genetics and Breeding Research Unit, USDA-Agricultural Research Service (Tifton)

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Crop Genetics and Breeding Research Unit, United States Department of Agriculture – Agriculture Research Service, Tifton

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Crop Genetics and Breeding Research Unit, United States Department of Agriculture, Agricultural Research Service (Tifton)

Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X

Crop Improvement Division, ICAR- Indian Institute of Pulses Research (ICAR- IIPR), Kanpur

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Crop Improvement Division, ICAR-Indian Institute of Pulses Research (Kanpur)

Pratap, A and Chaturvedi, S K and Tomar, R and Rajan, N and Malviya, N and Thudi, M and Saabale, P R and Prajapati, U and Varshney, R K and Singh, N P (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics. pp. 1-9. ISSN 1617-4615

Crop Improvement Division, ICAR-Indian Institute of Pulses, Research (IIPR), Kanpur

Jaganathan, D and Bohra, A and Thudi, M and Varshney, R K (2020) Fine mapping and gene cloning in the post-NGS era: advances and prospects. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1791-1810. ISSN 0040-5752

Crop Improvement Division, Indian Institute of Pulses Research (IIPR) (Kanpur)

Bohra, A and Pareek, S and Jha, R and Saxena, R K and Singh, I P and Pandey, G and Mishra, R K and Singh, F and Kaashyap, M and Joshi, R and Varshney, R K (2017) Modern Genomic Tools for Pigeonpea Improvement: Status and Prospects. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 41-54. ISBN 978-3-319-63795-2

Crop Improvement Section, ICAR-Indian Institute of Rice Research, Hyderabad, India

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

Crop Improvement, South Australian Research and Development Institute (Urrbrae)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Crop Phenotypic Innovation Research group, Institute of Crop Science, Chinese Academy of Agriculture Sciences

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Crop Protection and Management Research Unit, Agricultural Research Service (USDA) (Tifton)

Shasidhar, Y and Vishwakarma, M K and Pandey, M K and Janila, P and Variath, M T and Manohar, S S and Nigam, S N and Guo, B and Varshney, R K (2017) Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (794). pp. 1-14. ISSN 1664-462X

Crop Protection and Management Research Unit, US Department of Agriculture, Agricultural Research Service (Tifton)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Crop Protection and Management Research Unit, US Department of Agriculture-Agricultural Research Service (Tifton)

Khera, P and Pandey, M K and Mallikarjuna, N and Sriswathi, M and Roorkiwal, M and Janila, P and Sharma, S and Shilpa, K and Sudini, H and Guo, B and Varshney, R K (2018) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics (TSI). pp. 1-14. ISSN 1617-4615

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Crop Protection and Management Research Unit, US Department of Agriculture-Agricultural Research Service (USDA-ARS) (Tifton)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Crop Protection and Management Research Unit, US Department of Agriculture–Agricultural Research Service (Tifton)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Crop Protection and Management Research Unit, USDA-ARS (Tifton)

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Luo, H and Ren, X and Li, Z and Xu, Z and Li, X and Huang, L and Zhou, X and Chen, Y and Chen, W and Lei, Y and Liao, B and Pandey, M K and Varshney, R K and Guo, B and Jiang, X and Liu, F and Jiang, H (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (58). pp. 1-12. ISSN 1471-2164

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Crop Protection and Management Research Unit, USDA-ARS, (Tifton)

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Crop Protection and Management Research Unit, USDA-ARS, Tifton

Khan, S A and Chen, H and Deng, Y and Chen, Y and Zhang, C and Cai, T and Ali, N and Mamadou, G and Xie, D and Guo, B and Varshney, R K and Zhuang, W (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics (TSI), 133 (7). pp. 2239-2257. ISSN 0040-5752

Crop Protection and Management Research Unit, USDA-Agricultural Research Service (Tifton)

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644

Crop Protection and Management Research Unit, United State Department of Agriculture – Agricultural Research Service (USDA-ARS), Tifton, USA

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Crop Protection and Management Research Unit, United State Department of Agriculture- Agriculture Research Service

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Crop Protection and Management Research Unit, United State Department of Agriculture–Agricultural Research Service (USDA-ARS) (Tifton)

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Crop Protection and Management Research Unit, United State Department of Agriculture—Agriculture Research Service (USDA—ARS), Tifton

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

Crop Protection and Management Research Unit, United States Department of Agriculture – Agricultural Research Service, Tifton

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Crop Protection and Management Research Unit, United States Department of Agriculture, Agricultural Research Service (Tifton)

Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X

Crop Research Institute, Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou)

Nayak, S N and Pandey, M K and Jackson, S A and Liang, X and Varshney, R K (2017) Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-147. ISBN 978-3-319-63933-8

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Crop Research Institute, Jiangxi Academy of Agricultural Sciences, (Nanchang)

Li, S and Zhu, Y and Varshney, R K and Zhan, J and Zheng, X and Shi, J and Wang, X and Liu, G and Wang, H (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal (TSI), 18 (2). pp. 568-580. ISSN 1467-7644

Crop Science Lab, Graduate School of Agriculture, Hokkaido University (Sapporo)

Kashiwagi, J and Krishnamurthy, L and Purushothaman, R and Upadhyaya, H D and Gaur, P M and Gowda, C L L and Ito, O and Varshney, R K (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 (-). pp. 47-54. ISSN 1872-6852

Crop, Livestock, and Environment Division, International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki

Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762

Crops For the Future (UK) CIC 76-80 Baddow Road, Chelmsford, Essex

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Crops Genetics and Breeding Research Unit(Tifton)

Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021

Crops Research Institute (CRI) of Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou)

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Crops Research Institute (CRI), Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou)

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Crops Research Institute (CRI), Guangdong Academy of Agricultural Sciences (GAAS), Guangzhou, China

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Crops Research Institute of Guangdong Academy of Agricultural Sciences(Guangzhou)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Crops Research Institute of the Chinese Academy of Agricultural Sciences (Wuhan)

Vishwakarma, M K and Nayak, S N and Guo, B and Wan, L and Liao, B and Varshney, R K and Pandey, M K (2017) Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) (169). Springer, pp. 93-116. ISBN 978-3-319-63933-8

Crops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement (Guangzhou)

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

Crops Research Institute, Guangdong Academy of Agricultural Sciences (Guangzhou)

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY, 21 (3). pp. 491-498. ISSN 1814–9596 (In Press)

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. International Journal of Agriculture and Biology. pp. 1-8. ISSN 1814–9596 (In Press)

Zhu, F and Han, J and Liu, S and Chen, X and Varshney, R K and Liang, X (2014) Cloning, Expression Pattern Analysis and Subcellular Localization of Resveratrol Synthase Gene in Peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 5 (24). pp. 3619-3631. ISSN 2158-2750

Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China

Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067

Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement (Guangzhou)

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Provincial Key Laboratory for Crop Genetic Improvement, (Guangzhou)

Lu, Q and Hong, Y and Li, S and Liu, H and Li, H and Zhang, J and Lan, H and Liu, H and Li, X and Wen, S and Zhou, G and Varshney, R K and Jiang, H and Chen, X and Liang, X (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics (TSI), 20 (1). pp. 1-9. ISSN 1471-2164

Ctr. for Soybean Research of the State Key Lab. of Agrobiotechnology and School of Life Sciences, The Chinese Univ. of Hong Kong, Shatin, Hong Kong

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

Curtin University(Bentley)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Curtin University(Perth)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Cyprus University of Technology(Lemesos)

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

DBT-National Agri-food Biotechnology Institute (NABI), Punjab

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

DGR(Junagadh)

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Dalhousie University(Halifax)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Dbere Birhan Agricultural Research Ceneter (Debere Birhan)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

De Ruiter Seeds Benelux(The Netherlands)

Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105

Debere Zeit Agricultural Research Center (Debre Zeit)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Debere Zeit Agricultural Research Center, Ethiopian Institute of Agricultural Research (EIAR), Debre Zeit

Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818

Debre Zeit Agricultural Research Center

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Debre Zeit Agricultural Research Center (Debre Zeit)

Kumar, S and Das, A and Hauser, M and Muricho, G and Degefu, T and Fikre, A and Ojiewo, C and Ferede, S and Varshney, R K (2022) Estimating the potential to close yield gaps through increased efficiency of chickpea production in Ethiopia. Food Security, 14. pp. 1241-1258. ISSN 1876-4525

DebreZeit Agricultural Research Center, Ethiopian Institute of Agricultural Research (EIAR) (DebreZeit)

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Dep. Bioquímica y Biología Molecular

Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.

Dep. Crop and Soil Sciences, University of Georgia (Athens)

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Dep. of Agriculture and Environmental Sciences, Lincoln Univ., Jefferson, City

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

Dep. of Plant Sciences, Crop Development Centre, Univ. of Saskatchewan, Saskatoon,(Saskatchewan)

Rezaei, M K and Deokar, A A and Arganosa, G and Roorkiwal, M and Pandey, S K and Warkentin, T D and Varshney, R K and Tar′an, B (2019) Mapping Quantitative Trait Loci for Carotenoid Concentration in Three F2 Populations of Chickpea. The Plant Genome (TSI), 12 (3). pp. 1-12. ISSN 1940-3372

Dep. of Plant and Soil Science, Texas Tech Univ., Lubbock

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

Departamento de Genética, Universidad de Córdoba, Campus Rabanales (Córdoba)

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

Department of Agricultural Biotechnology and Biotechnology, Rajendra Prasad Central Agricultural University (Pusa)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

Department of Agricultural Biotechnology, Acharya N. G. Ranga Agricultural University (Hyderabad)

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

Department of Agricultural Sciences (Bologna)

Tardieu, F and Varshney, R K and Tuberosa, R (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398. ISSN 0022-0957

Department of Agricultural Sciences, University of Bologna (Bologna)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Department of Agricultural and Food Sciences, University of Bologna (Bologna)

Varshney, R K and Tuberosa, R and Tardieu, F (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany (TSI), 69 (13). pp. 3175-3179. ISSN 0022-0957

Varshney, R K and Tuberosa, R (2013) Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality, Volume 2. John Wiley & Sons, Inc. ISBN 978-0470962916

Varshney, R K and Tuberosa, R (2013) Translational Genomics for Crop Breeding: Biotic Stress, Volume 1. John Wiley & Sons, Inc. ISBN 9780470962909

Department of Agricultural, Food, and Environmental Sciences, Università Politecnica delle Marche (Ancona)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City, MO, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Department of Agriculture and Fisheries (Queensland)

Dillon, N and Kuhn, D and Innes, D and Bally, I and Varshney, R K (2015) Mango Genomics. In: Tropical Agriculture Conference 2015: Meeting the Productivity Challenge in the Tropics, November 16 - 18, 2015, Brisbane Convention & Exhibition Centre, Australia.

Department of Agriculture and Natural Sciences, Tennessee State University (Nashville)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Department of Agriculture, Forests, Nature and Energy (DAFNE), University of Tuscia (Viterbo)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Department of Agriculture, Kalluru (Khammam)

Gaur, P M and Singh, M K and Samineni, S and Sajja, S and Jukanti, A K and Kamatam, S and Varshney, R K (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209. pp. 253-260. ISSN 1573-5060

Department of Agriculture, Yezin, Myanmar

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Department of Agroenvironmental Science and Technology (Bologna)

Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621

Department of Agroenvironmental Science and Technology(Bologna)

Tuberosa, R and Graner, A and Varshney, R K (2011) Genomics of plant genetic resources: an introduction. Plant Genetic Resources, 9 (2). pp. 151-154. ISSN 1479-2621

Department of Agroenvironmental Sciences and Technology (Italy)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Department of Agronomy and Horticulture, University of Nebraska (Lincoln)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Department of Agronomy and Horticulture, University of Nebraska-Lincoln (Lincoln)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Department of Agronomy(Purdue University)

Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.

Department of Agronomy, College of Agriculture, Kansas State University (Manhattan)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University (Nakhon Pathom)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen Campus (Nakhon Pathom)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Department of Agronomy, Iowa State University (Ames)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Agronomy, Iowa State University, Ames

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Department of Agronomy, Iowa State University, Ames, IA, USA

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Department of Agronomy, Iowa State University, Ames, IA, USA,

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Department of Agronomy, Kansas State Universit (Manhattan)

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Department of Agronomy, Kansas State University (Manhattan)

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

Department of Agronomy, Kansas State University, (Manhattan)

Serba, D D and Yadav, R S and Varshney, R K and Gupta, S K and Govindaraj, M and Srivastava, R K and Gupta, R and Perumal, R and Tesso, T T (2020) Genomic Designing of Pearl Millet: A Resilient Crop for Arid and Semi-arid Environments. In: Genomic Designing of Climate-Smart Cereal Crops. Springer, Cham, Switzerland, pp. 221-286. ISBN 978-3-319-93381-8

Department of Agronomy, Kansas State University, Manhattan, KS

Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372

Department of Agronomy, The University of Florida (Gainesville)

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Department of Agronomy, University of Agriculture Faisalabad (Faisalabad)

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Department of Agronomy, University of Florida (Gainesville)

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

Department of Analytical Chemistry, Regional Centre of Advanced Technologies and Materials, Palacký University in Olomouc (Olomouc)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Department of Biochemistry and Molecular Biology, University of Massachusetts (Amherst)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, Starkvile

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, Starkville

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Department of Biochemistry, University of Calcutta, Kolkata

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Department of Biological Sciences (Florida)

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Department of Biological Sciences Huntsville, The University of Alabama in Huntsville (Huntsville)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Department of Biological Sciences, College of Science and Technology, Florida A&M University (Tallahassee)

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Department of Biological Sciences, Florida A&M University (Tallahassee)

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

Department of Biological Sciences, Florida International University (Miami)

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

Department of Biology, Case Western Reserve University (Cleveland)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Department of Biology, East Carolina University (Greenville)

Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644

Department of Biology, Faculty of Sciences, University Abdou Moumouni (Niamey)

Faye, I and Pandey, M K and Hamidou, F and Rathore, A and Ndoye, O and Vadez, V and Varshney, R K (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647. ISSN 1573-5060

Department of Biology, Genetics Institute, Interdisciplinary Center for Biotechnology Research, University of Florida (Gainesville)

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Department of Biology, Genetics Institute, and Plant Molecular & Cellular Biology Program, University of Florida (Gainesville)

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Department of Bioscience & Biotechnology, Banasthali University (Banasthali)

Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947

Department of Biosciences, Sardar Patel University (Anand)

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Department of Biotechnology and the DST/NRF Centre of Excellence in Food Security, University of the Western Cape (Bellville)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Department of Biotechnology, Ministry of Science and Technology, Government of India

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Department of Biotechnology, Present Address: University of Agricultural Sciences (Dharwad)

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Department of Biotechnology, University of Agricultural Sciences (Dharwad)

Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X

Gayathri, M and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1) (10). pp. 1-6. ISSN 1756-0500

Khedikar, Y and Pandey, M K and Sujay, V and Singh, S and Nayak, S N and Klein-Gebbinck, H W and Sarvamangala, C and Mukri, G and Garg, V and Upadhyaya, H D and Nadaf, H L and Gowda, M V C and Varshney, R K and Bhat, R S (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding (TSI), 38(1) (7). pp. 1-12. ISSN 1380-3743

Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644

Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

Department of Biotechnology, University of Agricultural Sciences (UAS) (Dharwad)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Department of Biotechnology, University of Agricultural Sciences (UAS), Dharwad, India

Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Department of Biotechnology, University of Agricultural Sciences, Dharwad

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067

Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, Vienna

Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372

Department of Botany, Faculty of Sciences, Palacký University in Olomouc (Olomouc)

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

Department of Botany, Indira Gandhi National Tribal University (IGNTU), Amarkantak

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

Department of Botany, Palacký University (Olomouc)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Department of Botany, Palacký University in Olomouc (Olomouc)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Department of Botany, Panjab University (Chandigarh)

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Department of Botany, Panjab University, (Chandigarh)

Kumar, R and Pandey, M K and Roychoudhry, S and Nayyar, H and Kepinski, S and Varshney, R K (2019) Peg Biology: Deciphering the Molecular Regulations Involved During Peanut Peg Development. Frontiers in Plant Science (TSI), 10 (1289). pp. 1-17. ISSN 1664-462X

Department of Botany, Sister Nibedita Government General Degree College for Girls, Kolkata

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Department of Botany, UGC-Center of Advanced Study, The University of Burdwan (Bardhaman)

Banerjee, A and Halder, U and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2016) Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. Genome Announcements, 4 (6). pp. 1-2. ISSN 2169-8287

Department of Chemistry, College of Natural Science, Dankook University (Cheonan)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri (Columbia)

Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X

Department of Computer Science, Iowa State University (Ames)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Crop Physiology, University of Agricultural Sciences (UAS) (Bangalore)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Department of Crop Science, Breeding and Plant Medicine, Mendel University in Brno (Brno)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Department of Crop Science, North Carolina State University (Raleigh)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University (Al-khod)

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Department of Crop and Soil Science, University of Georgia (Athens)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Department of Crop and Soil Sciences, North Carolina State University (Raleigh)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Department of Crop and Soil Sciences, North Carolina State University, (Raleigh)

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Department of Crop and Soil Sciences, University of Georgia (Tifton)

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Fountain, J C and Bajaj, P and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Scully, B T and Kemerait, R C and Varshney, R K and Guo, B (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

Department of Ecogenomics and Systems Biology, Faculty of Sciences, University of Vienna (Vienna)

Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737

Department of Ecogenomics and Systems Biology, University of Vienna (Vienna)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Ramalingam, A and Kudapa, H and Pazhamala, L T and Weckwerth, W and Varshney, R K (2015) Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Frontiers in Plant Science, 6 (1116). 01-21. ISSN 1664-462X

Department of Ecogenomics and Systems Biology, University of Vienna, Vienna

Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372

Department of Economics, University of Goettingen (Goettingen)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Department of Electrical Engineering and Computer Science, and Christopher

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Department of Energy Joint Genome Institute, Walnut Creek, CA, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Department of Energy, Joint Genome Institute (Walnut Creek)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Department of Environment and Agriculture, Curtin Institute for Computation, Curtin University (Perth)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

Department of Environment and Agriculture, Pulse Pathology and Genetics, Centre for Crop and Disease Management and Curtin Institute for Computation, Curtin University (Perth)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

Department of Epidemiology & Biostatistics, Michigan State University (East Lansing)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

Department of Experimental Plant Biology, Charles University (Prague)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Department of Field Crops, Akdeniz University (Antalya)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Department of Forest Ecosystems and Society, Oregon State University (Corvallis)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Department of Frontier Research and Development, Kazusa DNA Research Institute (KDRI) (Chiba)

Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X

Department of Frontier Research and Development, Kazusa DNA Research Institute (Kisarazu)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Department of Frontier Research, Kazusa DNA Research Institute (Chiba)

Gayathri, M and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1) (10). pp. 1-6. ISSN 1756-0500

Department of Frontier Research, Kazusa DNA Research Institute (China and Japan)

Bhat, R S and Kolekar, R M and Asha, B and Sukruth, M and Shirasawa, K and Sujay, V and Khedikar, Y and Sarvamangala, C and Gowda, M V C and Motagi, B N and Varshney, R K (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Department of Genetics and Biotechnology, Faculty of Science and Technique, University of Abomey-Calavi, Benin

Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758

Department of Genetics and Biotechnology, Laboratory of Molecular genetic and genomes analysis, University of Abomey-Calavi, Benin

Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758

Department of Genetics and Plant Breeding, Professor Jayashankar Telangana State Agricultural University (PJTSAU), (Hyderabad)

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Department of Genetics and Plant Breeding, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (RVSKVV) (Gwalior)

Yadav, P and Saxena, K B and Hingane, A J and Sameer Kumar, C V and Kandalkar, V S and Varshney, R K and Saxena, R K (2019) An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea. BMC Genomics (TSI), 20 (1). pp. 1-10. ISSN 1471-2164

Department of Genetics and Plant Breeding, Sam Higginbottom University of Agriculture, Technology and Sciences (SHUATS) (Allahabad)

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

Department of Genetics and Plant Breeding, University of Agricultural Sciences (Dharwad)

Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X

Khedikar, Y and Pandey, M K and Sujay, V and Singh, S and Nayak, S N and Klein-Gebbinck, H W and Sarvamangala, C and Mukri, G and Garg, V and Upadhyaya, H D and Nadaf, H L and Gowda, M V C and Varshney, R K and Bhat, R S (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding (TSI), 38(1) (7). pp. 1-12. ISSN 1380-3743

Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

Department of Genetics and Plant Breeding, University of Agricultural Sciences (Raichur)

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 (1140). pp. 1-10. ISSN 1664-462X

Department of Genetics and Plant Breeding, University of Agricultural Sciences (UAS) (Dharwad)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Department of Genetics and Plant Breeding, University of Agricultural Sciences - Raichur (UAS-R), (Raichur)

Sab, S and Lokesha, R and Mannur, D M and Somasekhar, S and Jadhav, K and Mallikarjuna, B P and Laxuman, C and Yeri, S and Valluri, V and Bajaj, P and Chitikineni, A and Vemula, A K and Rathore, A and Varshney, R K and Shankergoud, I and Thudi, M (2020) Genome-Wide SNP Discovery and Mapping QTLs for Seed Iron and Zinc Concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition (TSI), 7 (559120). pp. 1-9. ISSN 2296-861X

Department of Genetics(Osmania University)

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Department of Genetics, Hebrew University of Jerusalem, Jerusalem 91904, Israel

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

Department of Genetics, Osmania University (Hyderabad)

Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

Shasidhar, Y and Vishwakarma, M K and Pandey, M K and Janila, P and Variath, M T and Manohar, S S and Nigam, S N and Guo, B and Varshney, R K (2017) Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (794). pp. 1-14. ISSN 1664-462X

Garg, V and Agarwal, G and Pazhamala, L T and Nayak, S N and Kudapa, H and Khan, A W and Doddamani, D and Sharma, M and Kavi Kishor, P B and Varshney, R K (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Frontiers in Plant Science, 8 (488). pp. 1-16. ISSN 1664-462X

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Reddy, P S and Jogeswar, G and Rasineni, G K and Maheswari, M and Reddy, A R and Varshney, R K and Kavi Kishor, P B (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94. pp. 104-113. ISSN 0981-9428

Department of Genetics, Osmania University, (Hyderabad)

Shasidhar, Y and Variath, M T and Vishwakarma, M K and Manohar, S S and Gangurde, S S and Sriswathi, M and Sudini, H and Dobariya, K L and Bera, S K and Radhakrishnan, T and Pandey, M K and Janila, P and Varshney, R K (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal (TSI), 8 (1). pp. 1-15. ISSN 22145141

Zwart, R S and Thudi, M and Channale, S and Manchikatla, P K and Varshney, R K and Thompson, J P (2019) Resistance to Plant-Parasitic Nematodes in Chickpea: Current Status and Future Perspectives. Frontiers in Plant Science (TSI), 10 (966). pp. 1-14. ISSN 1664-462X

Department of Genetics, Osmania University, Hyderabad

Parmar, S and Deshmukh, D B and Kumar, R and Manohar, S S and Joshi, P and Sharma, V and Chaudhari, S and Variath, M T and Gangurde, S S and Bohar, R and Singam, P and Varshney, R K and Janila, P and Pandey, M K (2021) Single Seed-Based High-Throughput Genotyping and Rapid Generation Advancement for Accelerated Groundnut Genetics and Breeding Research. Agronomy (TSI), 11 (6). pp. 1-15. ISSN 2073-4395

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067

Barmukh, R and Roorkiwal, M and Jaba, J and Chitikineni, A and Mishra, S P and Sagurthi, S R and Munghate, R and Sharma, H C and Varshney, R K (2020) Development of a dense genetic map and QTL analysis for pod borer Helicoverpa armigera (Hübner) resistance component traits in chickpea ( Cicer arietinum L .). The Plant Genome (TSI). pp. 1-15. ISSN 1940-3372

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Department of Genetics, Osmania University, Hyderabad, India

Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203

Department of Genetics, University of Cordoba (Cordoba)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

Department of Genetics, University of Georgia (Athens)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Genetics, University of Georgia, Athens, GA

Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266

Department of Global Health and Population, Harvard T H Chan School of Public Health (Boston)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Department of Health Management and Informatics, University of Missouri, Columbia

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Department of Horticulture and Institute of Plant Breeding & Genomics, University of Georgia (Tifton)

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Department of Horticulture and Institute of Plant Breeding, Genetics & Genomics, The University of Georgia (Tifton)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Department of Horticulture and Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Tifton

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Department of Horticulture, University of Georgia (Tifton)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Horticulture, Zhejiang University, Yuhangtang Road, Hangzhou, China

Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752

Department of Human Genetics, Emory University, Atlanta

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Department of Life Sciences, Central University of Karnataka, Gulbarga

Parmar, S and Deshmukh, D B and Kumar, R and Manohar, S S and Joshi, P and Sharma, V and Chaudhari, S and Variath, M T and Gangurde, S S and Bohar, R and Singam, P and Varshney, R K and Janila, P and Pandey, M K (2021) Single Seed-Based High-Throughput Genotyping and Rapid Generation Advancement for Accelerated Groundnut Genetics and Breeding Research. Agronomy (TSI), 11 (6). pp. 1-15. ISSN 2073-4395

Department of Life Sciences, Central University of Karnataka, Kadaganchi

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Department of Life Sciences, Central University of Karnataka, Karnataka, India

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

Department of Metabolic Biology, John Innes Centre, Norwich Research Park (UK)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Department of Mycology and Plant Pathology, Banaras Hindu University (Varanasi)

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

Department of Plant Biology, Mendel University (BrnoBrno)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Department of Plant Biology, University of Georgia, Athens

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Department of Plant Biology, University of Illinois of Urbana-Champaign (Urbana)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Department of Plant Bioscience, College of Natural Resources & Life Science, Pusan National University (Pusan)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Department of Plant Breeding & Genetics, Punjab Agricultural University (Ludhiana)

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Department of Plant Breeding & Genetics, Punjab Agricultural University, Ludhiana

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources (Gorgan)

Mahdavi Mashaki, K and Garg, V and Ghomi, A A N and Kudapa, H and Chitikineni, A and Zaynali Nezhad, K and Yamchi, A and Soltanloo, H and Varshney, R K and Thudi, M (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE (TSI), 13 (6). pp. 1-17. ISSN 1932-6203

Department of Plant Breeding and Genetics, Cornell University (Ithaca)

Varshney, R K and Roorkiwal, M and Sorrells, M E (2017) Genomic Selection for Crop Improvement: An Introduction. In: Genomic Selection for Crop Improvement : New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing, pp. 1-6. ISBN 978-3-319-63168-4

Varshney, R K and Roorkiwal, M and Sorrells, M E (2017) Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing. ISBN 978-3-319-63168-4

Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Department of Plant Breeding, Cornell (Ithaca)

Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266

Department of Plant Developmental Genetics, Institute of Biophysics, Czech Academy of Sciences (Brno)

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

Department of Plant Genetics and Breeding, College of Agronomy and Biotechnology, China Agricultural University (Beijing)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Department of Plant Genome Research, Kazusa DNA Research Institute (Chiba)

Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541

Department of Plant Pathology and Crop Physiology, Louisiana State University (Baton Rouge)

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA

Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644

Department of Plant Pathology and Plant-Microbe Biology, Cornell University (Geneva)

Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052

Department of Plant Pathology, The University of Georgia (Tifton)

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Department of Plant Pathology, University of Agricultural Sciences (Dharwad)

Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541

Department of Plant Pathology, University of Agricultural Sciences, (Dharwad)

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

Department of Plant Pathology, University of California (Davis)

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

Department of Plant Pathology, University of Georgia (Tifton)

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Fountain, J C and Bajaj, P and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Scully, B T and Kemerait, R C and Varshney, R K and Guo, B (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

Department of Plant Pathology, University of Georgia, (Tifton)

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Department of Plant Pathology, University of Georgia, Tifton

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Department of Plant Production and Soil Science, Forestry and Agricultural Biotechnology Institute, University of Pretoria (Pretoria)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University (Seoul)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621

Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National University (Seoul)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621

Department of Plant Science, Bharathidasan University (Tiruchirappalli)

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

Department of Plant Sciences, North Dakota State University, Fargo, ND

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

Department of Plant Sciences, School of Life Sciences, University of Hyderabad (Hyderabad)

Reddy, P S and Jogeswar, G and Rasineni, G K and Maheswari, M and Reddy, A R and Varshney, R K and Kavi Kishor, P B (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94. pp. 104-113. ISSN 0981-9428

Department of Plant Sciences, University of California (Davis)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Department of Plant Sciences, University of California, Davis (Davis)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Plant Sciences, University of California–Davis (Davis)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Department of Plant Sciences, University of Oxford, South Parks Road, Oxford

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Department of Plant and Soil Science, Texas Tech University (Lubbock)

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Department of Plant and Soil Science, Texas Tech University, (Lubbock)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Department of Plant breeding and Genetics, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (Gwalior)

Yadav, P and Saxena, R K and Kandalkar, V S and Sameer Kumar, C V and Varshney, R K (2017) Identification of genes and genomic segments for cleistogamy in Pigeonpea(Cajanus cajan L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Department of Resource Economics and Environmental Sociology, University of Alberta, Edmonton (Alberta)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Department of Systems Biology and Biotechnology, National Institute of Biology, Ljubljana, Slovenia

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Dept of Crops, Horticulture and Soils, Egerton University

Oyier, M.O and Mulwa, R.M.S and Kimurto, P.K. and Towett, B.K. and Cheruiyot, E.K. and Rao, N.V.P.R.G and Silim, S.N. and Varshney, R K and Gaur, P M (2011) Marker assisted backcross breeding to enhance drought tolerance in Kenyan chickpea (Cicer arietinum L.) germplasm. In: 6th Egerton University International Conference: Research and Expo-Transformative Research for Sustainable Development, 21-23 September, 2011, Kenya.

Dept of Crops, Horticulture and Soils, Egerton University (Egerton)

Kimurto, P and Oyier, M and Mulwa, R and Songok, S and Towett, B and Cheruiyot, E and Varshney, R K and Gaur, P M and Mahender, T and Ganga Rao, N V P R and Silim, S and Siambi, M (2017) Performance of marker assisted backcross breeding (MABC) elite chickpea lines under drought conditions in Kenya. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Directorate of Groundnut Research (DGR - ICAR) (Junagadh)

Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452

Directorate of Groundnut Research (DGR) (Junagadh)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Directorate of Groundnut Research (DGR) of Indian Council of Agricultural Research (ICAR) (Junagadh)

Janila, P and Radhakrishnan, T and Murali, T V and Bera, S K and Dobariya, K L and Nigam, S N and Varshney, R K and Pandey, M K and Manohar, S S and Manivannan, N and Vasanthi, R P (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, October 10 - 12, 2018, Stellenbosch, South Africa.

Directorate of Groundnut Research (DGR), (Junagadh)

Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Directorate of Groundnut Research (Junagadh)

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Directorate of Groundnut Research (Junagadh)

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

Directorate of Groundnut Research(Junagadh)

Varshney, R K and Pandey, M K and Janila, P and Nigam, S N and Sudini, H and Gowda, M V C and Sriswathi, M and Radhakrishnan, T and Manohar, S S and Nagesh, P (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781. ISSN 0040-5752

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Directorate of Oilseeds Research(Hyderabad)

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Varshney, R K and Parzies, H K (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435. ISSN 1573-5060

Div. of Plant Sciences and National Ctr. for Soybean Biotechnology, Univ. of Missouri, Columbia

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

DivSeek, Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Diversity Arrays Technology Pty Ltd(Canbera)

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Diversity Arrays Technology Pty Ltd(Canberra)

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Diversité, Adaptation et Développement des Plantes (Montpellier)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Diversité, Adaptation et Développement des Plantes, Université de Montpellier (Montpellier)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Division of Applied Life Science (BK21 plus program) Department, Gyeongsang National University, PMBBRC (Jinju-si)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Division of Biomedical Statistics and Informatics(Rochester)

Tuteja, R and Saxena, R K and Davila, J and Shah, T and Chen, W and Xiao, Y-L and Fan, G and Saxena, K B and Alverson, A J and Spillane, C and Town, C and Varshney, R K (2013) Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes. DNA Research, 20 (5). pp. 485-495. ISSN 1756-1663

Division of Genetics & Plant Breeding, Faculty of Agriculture (FoA), Sher-e-Kashmir University of Agricultural Sciences & Technology of Kashmir (SKUAST-K) (Sopore)

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

Division of Genetics and Plant Breeding, Faculty of Agriculture, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K), Sopore

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

Division of Genetics, ICAR (IARI)

Sachdeva, S and Bharadwaj, C and Singh, S and Roorkiwal, M and Sharma, V and Singh, A and Varshney, R K (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences (TSI), 89 (5). pp. 834-841. ISSN 0019-5022

Division of Genetics, ICAR-Indian Agricultural Research Institute (ICAR-IARI), Delhi

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

Division of Genetics, ICAR-Indian Agricultural Research Institute (New Delhi)

Bharadwaj, C and Sachdeva, S and Singh, R K and Patil, B S and Roorkiwal, M and Chaturvedi, S and Varshney, R K (2018) Chickpea Genomics. In: Biotechnologies of Crop Improvement, Volume 3 : Genomic Approaches. Springer, pp. 289-316. ISBN 978-3-319-94745-7

Division of Genetics, ICAR–IARI Regional Research Centre for Improvement of Pulses, Dharwad, Karnataka

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

Division of Genetics, ICAR–Indian Agricultural Research Institute (ICAR–IARI), New Delhi

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

Division of Genetics, Indian Agricultural Research Institute (Delhi)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Division of Genetics, Indian Agricultural Research Institute (ICAR), Pusa, New Delhi, India

Baisakh, N and Sachdeva, S and Bharadwaj, C and Singh, R K and Jain, P K and Patil, B S and Roorkiwal, M and Varshney, R K (2020) Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 15 (7). pp. 1-25. ISSN 1932-6203

Division of Genetics, Indian Agricultural Research Institute (New Delhi)

Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947

Division of Genetics, Indian Agricultural Research Institute, Delhi, India

Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203

Division of Genetics, Indian Agriculture Research Institute (ICAR), New Delhi, India

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

Division of Genomic Resources, National Bureau of Plant Genetic Resources (NBPGR) (New Delhi)

Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947

Division of Life Science Department, Gyeongsang National University (Jinju-si)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Division of Plant Biotechnology, College of Agriculture and Life Science, Chonnam National University (Gwangju)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Division of Plant Biotechnology, Indian Institute of Pulses Research (ICAR)(Kanpur)

Iquebal, M A and Soren, K R and Gangwar, P and Shanmugavadivel, P S and Aravind, K and Singla, D and Jaiswal, S and Jasrotia, R S and Chaturvedi, S K and Singh, N P and Varshney, R K and Rai, A and Kumar, D (2017) Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. Frontiers in Plant Science, 8 (958). pp. 1-12. ISSN 1664-462X

Division of Plant Breeding and Genetics, Punjab Agricultural University (Ludhiana)

Sachdeva, S and Bharadwaj, C and Singh, S and Roorkiwal, M and Sharma, V and Singh, A and Varshney, R K (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences (TSI), 89 (5). pp. 834-841. ISSN 0019-5022

Division of Plant Breeding and Genetics, Sher-e-Kashmir University of Agricultural Sciences & Technology of Jammu (SKUAST-J)(Jammu)

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

Division of Plant Breeding and Genetics, Sher-e-Kashmir University of Agricultural Sciences & Technology of Kashmir (SKUAST-K) (Kashmir)

Mir, R R and Rather, I A and Bhat, M A and Parray, G A and Varshney, R K (2017) Molecular Mapping of Genes and QTLs in Pigeonpea. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 55-64. ISBN 978-3-319-63795-2

Division of Plant Breeding and Genetics, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu, India

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri (Columbia)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, MO, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Division of Plant Sciences, Laval University (Quebec)

Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644

Division of Plant Sciences, University of Missouri (Columbia)

Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644

Ye, H and Roorkiwal, M and Valliyodan, B and Zhou, L and Chen, P and Varshney, R K and Nguyen, H T (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany (TSI), 69 (13). pp. 3267-3277. ISSN 0022-0957

Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X

Division of Plant Sciences, University of Missouri, (Columbia)

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Division of Plant Sciences, University of Missouri-Fisher Delta Research Center (Portageville)

Ye, H and Roorkiwal, M and Valliyodan, B and Zhou, L and Chen, P and Varshney, R K and Nguyen, H T (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany (TSI), 69 (13). pp. 3267-3277. ISSN 0022-0957

Division of Research and Development (DRD), Tanzania Agricultural Research Institute (TARI) - Naliendele (Mtwara)

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Dong A University(Busan)

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Dong-A University(Busan)

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Dow AgroSciences (Indianapolis)

Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644

Dow AgroSciences(USA)

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

DowAgro(Indianapolis)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Dr. Hari Singh Gaur University(Sagar)

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Dr. Hari Singh Gour University Sagar(Madhya Pradesh)

Gujaria, Neha (2012) Development Of Functional Markers And Transcript Map Of Chickpea (Cicer arietinum L). PHD thesis, Dr. Hari Singh Gour University Sagar(Madhya Pradesh).

Dr. Panjabrao Deshmukh Agricultural University(Akola)

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Dr. Rajendra Prasad Central Agricultural University (Samastipur)

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Dr. Rajendra Prasad Central Agricultural University(Pusa)

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Dr. Rajendra Prasad Central Agricultural University(Samastipur)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

EAIR(Debre Zeit)

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

EARO(Debre Zeit)

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

EGRB(Brasília)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

EH Graham Centre for Agricultural Innovation(Wagga Wagga)

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

EIAR (Debre Zeit)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

EMBRAPA

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

EMBRAPA(Brasil)

Upadhyaya, H D and Valls, J F M and Bertolli, D and et al, . (2006) Molecular characterization of groundnut (Arachis hypogaea L.) composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

EMBRAPA(Brasília)

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

EU(Egerton)

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

Earth System Science Programme, The Chinese University of Hong Kong (Shatin)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Ecole de Gestion Et de Production Végétale Et Semencière, Université Nationale D’Agriculture

Ndossi, J and Akpo, E and Ojiewo, C O and Ringo, J and Kongola, E and Vernooy, R and Muricho, G and Lukurugu, G A and Makoye, L N and Tabo, R and Varshney, R K (2021) Delineating investment opportunities for stakeholders in sorghum seed systems: a logit model perspective. Agriculture & Food Security (TSI), 10 (1). pp. 1-13. ISSN 2048-7010

Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou

Akpo, E and Bakari, H and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Comparative advantage of newly-released varieties of groundnut in Tanzania. [Policy Briefs]

Akpo, A and Mwalongo, S and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Policy options for enhancing quality groundnut seed production and delivery systems in Tanzania. [Policy Briefs]

Akpo, E and Feleke, G and Fikre, A and Chichaybelu, M and Ojiewo, C O and Varshney, R K (2020) Analyzing Pathways of Nurturing Informal Seed Production into Formal Private Ventures for Sustainable Seed Delivery and Crop Productivity: Experiences from Ethiopia. Sustainability, 12 (6828). pp. 1-18.

Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou, (Benin)

Akpo, E and Muricho, G and Lukurugu, G A and Opie, H and Ojiewo, C O and Varshney, R K (2020) Legume seed production for sustainable seed supply and crop productivity: case of groundnut in Tanzania and Uganda. Journal of Crop Improvement (TSI). pp. 1-22. ISSN 1542-7528

Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou, Benin

Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395

Ecole de Gestion et de Production Végétale et Semencière, Université Nationale d’Agriculture, Kétou, Bénin

Kimbi, T G and Akpo, E and Kongola, E and Ojiewo, C O and Vernooy, R and Muricho, G and Ringo, J and Lukurugu, G A and Varshney, R K and Tabo, R (2020) A probit Analysis of Determinants of Adoption of Improved Sorghum Technologies Among Farmers in Tanzania. Journal of Agricultural Science (TSI), 13 (1). pp. 73-87. ISSN 1916-9752

Ecological Environment Protection Research Institute, Shanghai Academy of Agricultural Sciences (Shanghai)

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Egerton University (Egerton)

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

Egerton University (Nakuru)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Egerton University (Njoro)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Egerton University(Egerton)

Saxena, R K and von Wettberg, E and Upadhyaya, H D and Sanchez, V and Songok, S and Saxena, K B and Kimurto, P.K. and Varshney, R K (2014) Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). pp. 1-9. ISSN 1932-6203

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

EgertonUniversity (Njoro)

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Ekiti State Polytechnic(Isan)

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Eliseu Maciel School of Agronomy, Federal University of Pelotas, Campus UFPel (Capa˜o do Lea˜o)

Costa de Oliveira, A and Varshney, R K (2011) Root Genomics. Springer. ISBN 978-3-540-85545-3

Embrapa Genetic Resources and Biotechnology

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

Embrapa Genetic Resources and Biotechnology (Brasília)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa , Brasília DF

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Embrapa Recursos Gene´ticos e Biotecnologia

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Embrapa Recursos Genéticos e Biotecnologia(Brasília)

Varshney, R K and et al, . (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Embrapa Rice and Beans

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Ethiopian Biotechnology Institute, Addis Ababa

Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818

Ethiopian Institute of Agricultural Research (Addis Ababa)

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Ethiopian Institute of Agricultural Research (Debre Zeit)

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

Ethiopian Institute of Agricultural Research (EIAR) (Debre Ziet)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Ethiopian Institute of Agricultural Research (EIAR) (Melkassa)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Ethiopian Institute of Agricultural Research(Addis Ababa)

Sefera, T and Abebie, B and Gaur, P M and Assefa, K and Varshney, R K (2011) Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62 (2). pp. 177-187. ISSN 1836-5795

Ethiopian Institute of Agricultural Research, Debre Zeit Agricultural Research Center (Debre Zeit)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Ethiopian Institute of Agricultural Research, P.O. Box 2003, Addis Ababa 251, Ethiopia

Akpo, E and Feleke, G and Fikre, A and Chichaybelu, M and Ojiewo, C O and Varshney, R K (2020) Analyzing Pathways of Nurturing Informal Seed Production into Formal Private Ventures for Sustainable Seed Delivery and Crop Productivity: Experiences from Ethiopia. Sustainability, 12 (6828). pp. 1-18.

FACENA, Universidad Nacional del Nordeste (Corrientes)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

FAFU(Fuzhou)

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

FAO(Rome)

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

Facultad de Telemática, Universidad de Colima (Colima)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

Faculty of Agriculture, Alexandria University, Alexandria

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Faculty of Biological Sciences, University of Leeds, Leeds

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Faculty of Science, Palacký University in Olomouc (Olomouc)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Faculty of Sciences and Techniques, University Abdou Moumouni (Niamey)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Federal University of Pelotas(Capão do Leão)

Costa de Oliveira, A and Varshney, R K (2011) Introduction to root genomics. In: Root Genomics. Springer Berlin Heidelberg, New York, pp. 1-10. ISBN 978-3-540-85545-3

Feed the Future Lab for Crop Improvement, 431 Weill Hall, Cornell University, Ithaca

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Florida International University(Florida)

Roorkiwal, M and von Wettberg, E J and Upadhyaya, H D and Warschefsky, E and Rathore, A and Varshney, R K (2014) Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers. PLoS ONE, 9 (7). pp. 1-10. ISSN 1932-6203

Florida International University(MIami)

Saxena, R K and von Wettberg, E and Upadhyaya, H D and Sanchez, V and Songok, S and Saxena, K B and Kimurto, P.K. and Varshney, R K (2014) Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). pp. 1-9. ISSN 1932-6203

Forage Crop Research Institute (Japan)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Forage Crop Research Institute, Japan Grassland Agriculture and Forage Seed Association (Nasushiobara)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Forest Research Institute(Dehradun)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Former Principal Scientist (ICRISAT); 17, NMC Housing, Al Ain, Abu Dhabi, UAE

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, C V S and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports (TSI), 10 (1). pp. 1-17. ISSN 2045-2322

Fort Valley State University, Fort Valley (Georgia)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Frankfurt am Main

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Frankfurter Innovationszentrum Biotechnologie(Altenhöferallee)

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Varshney, R K and Horres, R and Molina, C and Nayak, S N and Jungmann, R and Swamy, P and Winter, P and Jayashree, B and Kahl, G and Hoisington, D A (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of SAT Agricultural Research, 5 (1). pp. 1-3. ISSN 0973-3094

Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, New Brunswick, Canada

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

French National Institute for Agricultural Research (INRA) (Montpellier)

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

Fujian Academy of Agricultural Sciences (Fuzhou)

Liu, N and Wu, B and Pandey, M K and Huang, L and Luo, H and Chen, Y and Zhou, X and Chen, W and Huai, D and Yu, B and Chen, H and Guo, J and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2022) Gene expression and DNA methylation altering lead to the high oil content in wild allotetraploid peanut (A. monticola). Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Fujian Agricultural and Forestry University (Fujian)

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

Fujian Agricultural and Forestry University(Fujian)

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Fujian Agricultural and Forestry University(Fuzhou)

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Fujian Agricultural and Forestry University, College of Crop Science (Fuzhou)

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Fujian Agricultural and Forestry University, College of Plant Protection (Fuzhou)

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Fujian Agriculture & Forestry University (Fujian)

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

Fujian Agriculture and Forestry University (Fuzhou)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S and Zheng, Y and Ma, S and Tang, R and Varshney, R K and Zhuang, W (2016) Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnol Journal, 14 (2). pp. 682-698. ISSN 2349-6738

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Fujian Agriculture and Forestry University(Fujian)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Fujian Agriculture and Forestry University(Fuzhou)

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Fujian Colleges and Universities Engineering Research Institute of Conservation and Utilization of Natural Bioresources, College of Forestry, Fujian Agriculture and Forestry University (Fuzhou)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Fujian Provincial Key Laboratory of Crop Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou (Fujian)

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S B and Varshney, R K and Zhuang, W J (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Fujian Provincial Key Laboratory of Plant Molecular and Cell Biology, Oil Crops Research Institute, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University (Fuzhou)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Fujian Provincial Key Laboratory of Plant Molecular and Cell Biology, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China

Khan, S A and Chen, H and Deng, Y and Chen, Y and Zhang, C and Cai, T and Ali, N and Mamadou, G and Xie, D and Guo, B and Varshney, R K and Zhuang, W (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics (TSI), 133 (7). pp. 2239-2257. ISSN 0040-5752

Fuli Institute of Food Science, Zhejiang University (Hangzhou)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Functional and Applied Genomics Laboratory, National Institute of Plant Genome Research (NIPGR) (New Delhi)

Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322

Functional and Applied Genomics Laboratory, National Institute of Plant Genome Research (New Delhi)

Garg, R and Varshney, R K and Jain, M (2014) Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science, 5. ISSN 1664-462X

G B Pant University of Agriculture and Technology, Pantnagar

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

GAAS(Guangzhou)

Zhu, W and Chen, X and Li, H and Zhu, F and Hong, Y and Varshney, R K and Liang, X (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409. ISSN 1573-5028

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

GenXPro (Frankfurt)

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

GenXPro GmbH(Frankfurt am Main)

Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

GenXPro GmbH(Frankfurt)

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Generation Challenge Program(Mexico)

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Generation Challenge Program/Integrated Breeding Platform (Mexico)

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

Generation Challenge Programme

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Generation Challenge Programme (GCP)(Mexico)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Generation Challenge Programme(CIMMYT)

Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266

Generation Challenge Programme(Mexico)

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266

Genetic Improvement of Fruits and Vegetables Laboratory, USDA-ARS (Beltsville)

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

Genome British Columbia(Vancouver)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Genome British Columbia, 400-575 West 8th Avenue, Vancouver

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Genome Center, University of California (Davis)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Genome Center, University of California, Davis (Davis)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Genome Prairie, 111 Research Drive, Suite 101, Saskatoon, SK

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Genomic Diversity Facility, Inst. of Biotechnology, Cornell University (Ithaca)

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Genomic Open-Source Breeding Informatics Initiative (GOBii) Project, Institute of Biotechnology, Cornell University, Ithaca, NY, United States

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

Genomics Towards Gene Discovery Subprogramme

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Genomics and Bioinformatics Research Unit, US Department of Agriculture Agricultural Research Service (Stoneville)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Genomics towards Gene Discovery Sub Programme, Generation Challenge Programme (GCP) (Mexico)

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2010) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 121 (05). pp. 971-984. ISSN 1432-2242

Genomics towards Gene Discovery Sub Programme, Generation Challenge Programme (Mexico)

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26 (2). pp. 371-380. ISSN 1380-3743

Genomix CARL Pvt. Ltd. Rayalapuram Road, Pulivendula (Kadapa)

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

Genus plc (Hendersonville)

Jenko, J and Gorjanc, G and Cleveland, M A and Varshney, R K and Whitelaw, C B A and Woolliams, J A and Hickey, J M (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (55). pp. 1-34. ISSN 0999-193X

Ghatal Rabindra Satabarsiki MahaVidyalaya, Paschim Medinipur, West Bengal

Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Glenn Cole Pioneer(Woodland)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Global Chocolate Science & Technology( Hackettstown)

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Global Crop Diversity Trust (Bonn)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Global Crop Diversity Trust (Italy)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Global Crop Diversity Trust(Bonn)

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Goethe University Frankfurt am Main(Frankfurt)

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Goethe University(Frankfurt am Main)

Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X

Gonder Agricultural Research Ceneter (Gonder)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Google, Mountain View

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

Government Medical College Thiruvananthapuram (Thiruvananthapuram)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica (Taipei)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Grain Legume Genetics and Physiology Research Unit USDA-ARS, Washington State University (Pullman)

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

Grains Research and Development Corporation (Australia)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Grains Research and Development Corporation (GRDC) (Canberra)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Griffith University(Nathan)

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

Guandong Academy of Agricultural Sciences(China)

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Guangdong Academy of Agricultural Sciences (GAAS), Guangdong

Chen, X and Zhu, W and Azam, S and Li, H and Zhu, F and Li, H and Hong, Y and Liu, H and Zhang, E and Wu, H and Yu, S and Zhou, G and Li, S and Zhong, N and Wen, S and Li, X and Knapp, S J and Ozias-Akins, P and Varshney, R K and Liang, X (2013) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.

Guangdong Academy of Agricultural Sciences (Guangzhou)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Guangdong Academy of Agricultural Sciences(Guangdong)

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Guangdong Academy of Agricultural Sciences(Guangzhou)

Xiao, Y and Liu, H and Du, P and Liang, X and Li, H and Lu, Q and Li, S and Liu, H and Hong, Y and Varshney, R K and Chen, X (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379. ISSN 0308-8146

Xiao, Y and Liu, H and Lu, Q and Li, H and Liu, Q and Li, S and Liu, H and Varshney, R K and Liang, X and Hong, Y and Chen, X (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155. ISSN 0963-9969

Hong, Y and Pandey, M K and Lu, Q and Liu, H and Gangurde, S S and Li, S and Liu, H and Li, H and Liang, X and Varshney, R K and Chen, X (2021) Genetic diversity and distinctness based on morphological and SSR markers in peanut. Agronomy Journal (TSI), 113 (6). pp. 4648-4660. ISSN 0002-1962

Guangdong Key Laboratory of New Technology in Rice Breeding, (Guangzhou)

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Guangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University (Shenzhen)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Guangdong Provincial Key Laboratory of Crops Genetics and Improvement (Guangzhou)

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY, 21 (3). pp. 491-498. ISSN 1814–9596 (In Press)

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. International Journal of Agriculture and Biology. pp. 1-8. ISSN 1814–9596 (In Press)

Guangxi Academy of Agricultural Sciences (Nanning)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Guangxi Academy of Agricultural Sciences(Guangxi)

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Guangzhou University

Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Guangzhou University(Guangzhou)

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Gujarat Agriculture University(Junagadh)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Gujarat Biotechnology Research Centre(Gandhinagar)

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

Gujarat Biotechnology University(Gandhinagar)

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540

Gujarat Biotechnology University(Gujarat)

Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811

Guru Gobind Singh Indraprastha University(Delhi)

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

HAAS(Wuhan)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University (Fuzhou)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Haramaya University (Dire Dawa)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Haramaya University(Dire Dawa)

Sefera, T and Abebie, B and Gaur, P M and Assefa, K and Varshney, R K (2011) Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62 (2). pp. 177-187. ISSN 1836-5795

Hatherly Laboratories (UK)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Heilongjiang Bayi Agricultural University (Daqing)

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Henan Academy of Agricultural Sciences (HAAS), Zhenzhou, China

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Henan Academy of Agricultural Sciences (Zhengzhou)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Henan Academy of Agricultural Sciences(Zhengzhou)

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Henan Academy of Agricultural Sciences, Cash Crops Research Institute (Zhengzhou)

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Henan Academy of Agricultural Sciences, Industrial Crops Research Institute (Zhengzhou)

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Henan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Industrial Crops Research Institute, Henan Academy of Agricultural Sciences (Zhengzhou)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Hermitage Research Station

Cuc, L M and Mace, E S and Crouch, J H and Quang, V D and Long, T D and Varshney, R K (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (55). pp. 1-11.

Hokkaido University (Sapporo)

Purushothaman, R and Thudi, M and Krishnamurthy, L and Upadhyaya, H D and Kashiwagi, J and Gowda, C L L and Varshney, R K (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174. pp. 1-11. ISSN 0378-4290

Hokkaido University(Sapparo)

Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D A (2011) Genomics and Physiological Approaches for Root Trait Breeding to Improve Drought Tolerance in Chickpea (Cicer arietinum L.). In: Root Genomics. Springer, Germany, pp. 233-250. ISBN 9783540855453

Hokkaido University(Sapparo)

Kashiwagi, J and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Varshney, R K and Tobita, S (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 (1). pp. 88-95. ISSN 0378-4290

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D (2011) Genomics and physiological approaches for root trait breeding to improve drought tolerance in chickpea (Cicer arietinum L.). In: Root Genomics. Springer Berlin, Heidelberg, pp. 233-250. ISBN 978-3-540-85545-3

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

Hokkaido University(Sapporo)

Krishnamurthy, L and Kashiwagi, J and Tobita, S and Ito, O and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Sheshshayee, M S and Singh, Sube and Vadez, V and Varshney, R K (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 14 (12). pp. 1350-1361. ISSN 1445-4408

Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and et al, . (2012) Phenotyping chickpeas and pigeonpeas for adaptation to drought. Frontiers in Plant Physiology, 3 (179). pp. 1-10.

Horticulture Department, University of Georgia, (Tifton)

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Huaiyin Normal University (Jiangsu)

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

Huazhong Agricultural University (Wuhan)

Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Hubei Academy of Agricultural Sciences(Wuhan)

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Hudson-Alpha Institute for Biotechnology, Huntsville, AL, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

HudsonAlpha Institute of Biotechnology (Huntsville)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Hytech Seed India Pvt Ltd, (Hyderabad)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

IARI (New Delhi)

Gaur, P M and Samineni, S and Tripathi, S and Varshney, R K and Gowda, C L L (2015) Allelic relationships of flowering time genes in chickpea. Euphytica, 203 (2). pp. 295-308. ISSN 0014-2336

IARI(New Delhi)

Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).

IAS-CSIC

Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.

ICABIOGRAD-IAARD (Jalan Tentara Pelajar)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

ICAR National Organic Farming Research Institute (Gangtok)

Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X

ICAR Research Complex for Eastern Region (Patna)

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Saxena, K B and Choudhary, A K and Saxena, R K and Varshney, R K (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science (TSI), 68 (2). pp. 159-167. ISSN 1344-7610

ICAR Research Complex for NEH Region, Tripura Centre, Lembucherra (Tripura)

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

ICAR(New Delhi)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

ICAR- Indian Agricultural Research Institute(New Delhi)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

ICAR- Indian Institute of Pulses Research (IIPR), Kanpur, Uttar Pradesh

Saxena, R K and Hake, A and Bohra, A and Khan, A W and Hingane, A and Sultana, R and Singh, I P and Naik, S J S and Varshney, R K (2020) A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

ICAR- National Institute for Plant Biotechnology, New Delhi

Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472

ICAR-Central Arid Zone Research Institute (CAZRI), (Jodhpur)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

ICAR-Central Arid Zone Research Institute, Jodhpur

Yadav, O P and Gupta, S K and Govindaraj, M and Sharma, R and Varshney, R K and Srivastava, R K and Rathore, A and Mahala, R S (2021) Genetic Gains in Pearl Millet in India: Insights Into Historic Breeding Strategies and Future Perspective. Frontiers in Plant Science, 12 (645038). pp. 1-15. ISSN 1664-462X

ICAR-Central Institute of Temperate Horticulture (CITH) (Srinagar)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

ICAR-Central Research Institute for Jute and Allied Fibres (Barrackpore)

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

ICAR-Central Soil Salinity Research Institute (ICAR-CSSRI), Karnal

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

ICAR-Central Soil Salinity Research Institute(Karnal)

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

ICAR-Directorate of Groundnut Research (DGR) (Junagadh)

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ICAR-Directorate of Groundnut Research (DGR), Junagadh

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

ICAR-Directorate of Groundnut Research (ICAR-DGR) (Junagadh)

Dodia, S M and Joshi, B and Gangurde, S S and Thirumalaisamy, P P and Mishra, G P and Narandrakumar, D and Soni, P and Rathnakumar, A L and Dobaria, J R and Sangh, C and Chitikineni, A and Chanda, S V and Pandey, M K and Varshney, R K and Thankappan, R (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics (TSI), 132 (4). pp. 1001-1016. ISSN 0040-5752

ICAR-Directorate of Groundnut Research (ICAR-DGR), (Junagadh)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

ICAR-Directorate of Groundnut Research(Junagadh)

Pandey, M K and Gangurde, S S and Shasidhar, Y and Sharma, V and Kale, S M and Khan, A W and Shah, P and Joshi, P and Bhat, R S and Janila, P and Bera, S K and Varshney, R K (2024) High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut. BMC Plant Biology (TSI), 24. pp. 1-16. ISSN 1471-2229

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

ICAR-Directorate of Groundnut Research, (Junagadh)

Shasidhar, Y and Variath, M T and Vishwakarma, M K and Manohar, S S and Gangurde, S S and Sriswathi, M and Sudini, H and Dobariya, K L and Bera, S K and Radhakrishnan, T and Pandey, M K and Janila, P and Varshney, R K (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal (TSI), 8 (1). pp. 1-15. ISSN 22145141

ICAR-Directorate of Groundnut Research, Post Box No. 05, Ivnagar Road, Junagadh, Gujarat

Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

ICAR-IARI Regional Centre (Dharwad)

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ICAR-IIPR (Kanpur)

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ICAR-Indian Agricultural Research Institue, Pusa (New Delhi)

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ICAR-Indian Agricultural Research Institute (New Delhi)

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

ICAR-Indian Agricultural Research Institute(New Delhi)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

ICAR-Indian Agricultural Research Institute, New Delhi

Kumar, N and Bharadwaj, C and Soni, A and Sachdeva, S and Yadav, M C and Pal, M and Soren, K R and Meena, M C and Roorkiwal, M and Varshney, R K and Rana, M (2020) Physio-morphological and molecular analysis for salt tolerance in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 90 (4). pp. 132-136.

ICAR-Indian Agricultural Research Institute, Pusa, New Delhi

Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472

ICAR-Indian Agricultural Research Institute, Regional Research Centre, Dharwad, Karnataka

Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336

ICAR-Indian Agricultural Statistical Research Institute(New Delhi)

Bohra, A and Jha, U C and Naik, S J S and Mehta, S and Tiwari, A and Maurya, A K and Singh, D and Yadav, V and Patil, P G and Saxena, R K and Varshney, R K (2021) Genomics: Shaping Legume Improvement. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 49-89. ISBN 978-3-030-64500-7

ICAR-Indian Agricultural Statistics Research Institute (New Delhi)

Bohra, A and Jha, R and Pandey, G and Patil, P G and Saxena, R K and Singh, I P and Singh, D and Mishra, R K and Mishra, A and Singh, F and Varshney, R K and Singh, N P (2017) New Hypervariable SSR Markers for Diversity Analysis, Hybrid Purity Testing and Trait Mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 (377). pp. 1-15. ISSN 1664-462X

ICAR-Indian Institute of Maize Research (Ludhiana)

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

ICAR-Indian Institute of Millets Research (Hyderabad)

Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

ICAR-Indian Institute of Pulses Research (ICAR-IIPR) (Kanpur)

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur

Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

ICAR-Indian Institute of Pulses Research (IIPR) (Kanpur)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752

Saxena, R K and Rathore, A and Bohra, A and Yadav, P and Das, R R and Khan, A W and Singh, V K and Chitikineni, A and Singh, I P and Sameer Kumar, C V and Varshney, R K (2018) Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. The Plant Genome (TSI), 11 (3). pp. 1-10. ISSN 1940-3372

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Bohra, A and Jha, R and Pandey, G and Patil, P G and Saxena, R K and Singh, I P and Singh, D and Mishra, R K and Mishra, A and Singh, F and Varshney, R K and Singh, N P (2017) New Hypervariable SSR Markers for Diversity Analysis, Hybrid Purity Testing and Trait Mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 (377). pp. 1-15. ISSN 1664-462X

ICAR-Indian Institute of Pulses Research (IIPR), Kanpur

Bohra, A and Chand Jha, U and Godwin, I D and Varshney, R K (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal (TSI). pp. 1-18. ISSN 1467-7644

Bohra, A and Saxena, K B and Varshney, R K and Saxena, R K (2020) Genomics-assisted breeding for pigeonpea improvement. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1721-1737. ISSN 0040-5752

ICAR-Indian Institute of Pulses Research (IIPR), Kanpur, India

Bohra, A and Pareek, S and Jones, M and Jha, U C and Naik, S J S and Kaashyap, M and Patil, P G and Maurya, A K and Saxena, R K and Varshney, R K (2019) Genomic Interventions to Improve Resilience of Pigeonpea in Changing Climate. In: Genomic Designing of Climate-Smart Pulse Crops. Springer Nature, Switzerland, pp. 107-134. ISBN 978-3-319-96931-2

ICAR-Indian Institute of Pulses Research (Kanpur)

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Bharadwaj, C and Sachdeva, S and Singh, R K and Patil, B S and Roorkiwal, M and Chaturvedi, S and Varshney, R K (2018) Chickpea Genomics. In: Biotechnologies of Crop Improvement, Volume 3 : Genomic Approaches. Springer, pp. 289-316. ISBN 978-3-319-94745-7

Chaturvedi, S K and Singh, N P and Gaur, P M and Mishra, N and Alok, D and Sumit, S and Varshney, R K (2017) Efforts and strategies for alleviation of drought tolerance in chickpea in India. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ICAR-Indian Institute of Pulses Research(Kanpur)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

Bohra, A and Jha, U C and Naik, S J S and Mehta, S and Tiwari, A and Maurya, A K and Singh, D and Yadav, V and Patil, P G and Saxena, R K and Varshney, R K (2021) Genomics: Shaping Legume Improvement. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 49-89. ISBN 978-3-030-64500-7

ICAR-Indian Institute of Pulses Research, Kanpur

Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472

ICAR-Indian Institute of Pulses Research, Kanpur, UP, India

Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203

ICAR-Indian Institute of Sugarcane Research (Lucknow)

Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

ICAR-NRCPB, Pusa (New Delhi)

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

ICAR-National Research Centre on Pomegranate(Solapur)

Bohra, A and Jha, U C and Naik, S J S and Mehta, S and Tiwari, A and Maurya, A K and Singh, D and Yadav, V and Patil, P G and Saxena, R K and Varshney, R K (2021) Genomics: Shaping Legume Improvement. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 49-89. ISBN 978-3-030-64500-7

ICAR-National Rice Research Institute, Cuttack

Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644

ICAR-Sugarcane Breeding Institute (Coimbatore)

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

ICAR-Sugarcane Breeding Institute(Coimbatore)

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

ICAR-lndian Institute of Pulses Research (Kanpur)

Chaturvedi, S K and Jha, S K and Singh, N P and Gaur, P M and Varshney, R K (2018) Technological And Policy Intervention For Increasing Chickpea Production In India. Pulse India, 8 (1). pp. 7-12.

ICARDA (Addis Ababa)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Kaoneka, S R and Saxena, R K and Silim, S N and Odeny, D A and Ganga Rao, N V P R and Shimelis, H A and Siambi, M and Varshney, R K (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154. ISSN 1439-0523

ICARDA (Rabat)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

ICARDA(Agdal Rabat)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

ICARDA(Aleppo)

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Chabane, K and Varshney, R K and Graner, A and Valkoun, J (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881. ISSN 1573-5109

Upadhyaya, H D and Dwivedi, S L and Baum, M and Varshney, R K and Udupa, S M and Gowda, C L L and Hoisington, D A and Singh, Sube (2008) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology, 8 (106). pp. 1-12.

Varshney, R K and Thiel, T and Sretenovic-Rajicic, T and Baum, M and Valkoun, J and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Molecular Breeding, 22 (1). pp. 1-13. ISSN 1380-3743

Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452

ICARDA(Amlaha)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

ICARDA(Cairo)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

ICARDA(Rabat)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

ICAR–All India Coordinated Research Project on Chickpea (AICRP-Chickpea), ICAR–IIPR, Kanpur

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

ICAR–Indian Agricultural Research Institute (IARI) (New Delhi)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

ICAR–Indian Agricultural Research Institute (New Delhi)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

ICAR–Indian Institute of Maize Research (ICAR–IIMR), PAU campus, Ludhiana, Punjab

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

ICAR–Indian Institute of Pulses Research (ICAR–IIPR), Kanpur, Uttar Pradesh

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

ICAR—Indian Institute of Pulses Research (IIPR), Kanpur, Uttar Pradesh

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

ICMR-National Institute of Nutrition (NIN), Hyderabad

Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X

ICMR-National Institute of Nutrition(Hyderabad)

Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640

ICRISAT (Addis Ababa)

Ojiewo, C and Akpo, E and Hagmann, J and Varshney, R K (2020) Strategic Framework to Foster Grain Legume and Dryland Cereal Seed Systems Innovations Guidelines to Drive Seed Delivery Systems through Commodity Value Chains. Manual. ICRISAT.

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

ICRISAT (Bamako)

Akpo, E and Ojiewo, C O and Kapran, I and Omoigui, L O and Diama, A and Varshney, R K (2021) Enhancing Smallholder Farmers’ Access to Seed of Improved Legume Varieties Through Multi-Stakeholder Platforms. Springer, Singapore. ISBN 978-981-15-8014-7

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

Palit, P and Kudapa, H and Zougmore, R and Kholova, J and Whitbread, A M and Sharma, M and Varshney, R K (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22. pp. 1-12. ISSN 2214-6628

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Zongo, A and Khera, P and Sawadogo, M and Shasidhar, Y and Sriswathi, M and Vishwakarma, M K and Sankara, P and Ntare, B R and Varshney, R K and Pandey, M K and Desmae, H (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15. pp. 132-137. ISSN 2215017X

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

ICRISAT (Kano)

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

ICRISAT (Kenya)

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

ICRISAT (Lilongwe)

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Gumma, M K and Tsusaka, T W and Mohammed, I and Chavula, G and Ganga Rao, N V P R and Okori, P and Ojiewo, C O and Varshney, R K and Siambi, M and Whitbread, A M (2019) Monitoring Changes in the Cultivation of Pigeonpea and Groundnut in Malawi Using Time Series Satellite Imagery for Sustainable Food Systems. Remote Sensing (TSI), 11(12) (1475). pp. 1-23. ISSN 2072-4292

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

ICRISAT (Nairobi)

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Akpo, E and Ojiewo, C O and Kapran, I and Omoigui, L O and Diama, A and Varshney, R K (2021) Enhancing Smallholder Farmers’ Access to Seed of Improved Legume Varieties Through Multi-Stakeholder Platforms. Springer, Singapore. ISBN 978-981-15-8014-7

Daudi, H and Shimelis, H and Mathew, I and Oteng‐Frimpong, R and Ojiewo, C and Varshney, R K (2020) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Akpo, E and Ojiewo, C O and Melesse, M B and Ganga Rao, N and Mwololo, J and Manyasa, E and Ojulong, H and Harawa, R and Varshney, R K (2020) Aggravated food insecurity in COVID-19 era: quality seed flow of adapted and nutrient-dense varieties is central to the recovery equation in the drylands. Romanian Journal of Applied Sciences and Technology, 2 (5). pp. 62-65. ISSN 2668-778X

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Sowing Legume Seeds,Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore.

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Better-off Women Boosting Groundnut Business in Ghana. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 91-104. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Breakthroughs in Groundnut Production Communities in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 77-83. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) A Brief Overview of Smallholder Farmers’ Access to Seed of Improved Legume Varieties. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 1-2. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Common Bean Value Chain Actors Share Their Feeling About TL Projects in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 33-56. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Concluding Remarks: The Tropical Legumes Projects Empowered Communities in a Wide Variety of Assets. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 105-106. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Empowered Communities Tell Their Own Stories from Common Bean Production in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 65-75. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Enthusiasm of Actors Within the Groundnut Value Chain Sharing Impact Stories in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 57-64. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Impact Stories and Testimonies from Diverse Actors in Groundnut Value Chain in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 3-32. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Women at the Center of Cowpea Value Chain Development in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 85-90. ISBN 978-981-15-0844-8

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Varshney, R K and Ojiewo, C O and Monyo, E (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market-demand to benefit smallholder farmers and empowerment of national programmes in sub-Saharan Africa and South Asia. Plant Breeding (TSI), 138 (4). pp. 379-388. ISSN 01799541

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mishra, N and Monyo, E S and Varshney, R K (2017) Harnessing the power of social media to reach the unreached: knowledge dissemination for greater impact of tropical legumes. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kimurto, P and Oyier, M and Mulwa, R and Songok, S and Towett, B and Cheruiyot, E and Varshney, R K and Gaur, P M and Mahender, T and Ganga Rao, N V P R and Silim, S and Siambi, M (2017) Performance of marker assisted backcross breeding (MABC) elite chickpea lines under drought conditions in Kenya. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Kaoneka, S R and Saxena, R K and Silim, S N and Odeny, D A and Ganga Rao, N V P R and Shimelis, H A and Siambi, M and Varshney, R K (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154. ISSN 1439-0523

Monyo, E S and Varshney, R K (2016) Seven seasons of learning and engaging smallholder farmers in the drought-prone areas of sub-Saharan Africa and South Asia through Tropical Legumes, 2007–2014. ICRISAT, Patancheru. ISBN 978-92-9066-568-7

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

ICRISAT (Niamey)

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Faye, I and Pandey, M K and Hamidou, F and Rathore, A and Ndoye, O and Vadez, V and Varshney, R K (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647. ISSN 1573-5060

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

ICRISAT (Patancheru)

Srivastava, R K and Yadav, O P and Kaliamoorthy, S and Gupta, S K and Serba, D D and Choudhary, S and Govindaraj, M and Kholová, J and Murugesan, T and Satyavathi, C T and Gumma, M K and Singh, R B and Bollam, S and Gupta, R and Varshney, R K (2022) Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects. Frontiers in Plant Science (TSI), 13. pp. 1-20. ISSN 1664-462X

Govintharaj, P and Maheswaran, M and Blümmel, M and Sumathi, P and Vemula, A K and Rathore, A and Sivasubramani, S and Kale, S M and Varshney, R K and Gupta, S K (2021) Understanding Heterosis, Genetic Effects, and Genome Wide Associations for Forage Quantity and Quality Traits in Multi-Cut Pearl Millet. Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Ndossi, J and Akpo, E and Ojiewo, C O and Ringo, J and Kongola, E and Vernooy, R and Muricho, G and Lukurugu, G A and Makoye, L N and Tabo, R and Varshney, R K (2021) Delineating investment opportunities for stakeholders in sorghum seed systems: a logit model perspective. Agriculture & Food Security (TSI), 10 (1). pp. 1-13. ISSN 2048-7010

Akpo, A and Mwalongo, S and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Policy options for enhancing quality groundnut seed production and delivery systems in Tanzania. [Policy Briefs]

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336

Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818

Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X

Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762

Parmar, S and Deshmukh, D B and Kumar, R and Manohar, S S and Joshi, P and Sharma, V and Chaudhari, S and Variath, M T and Gangurde, S S and Bohar, R and Singam, P and Varshney, R K and Janila, P and Pandey, M K (2021) Single Seed-Based High-Throughput Genotyping and Rapid Generation Advancement for Accelerated Groundnut Genetics and Breeding Research. Agronomy (TSI), 11 (6). pp. 1-15. ISSN 2073-4395

Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203

Zhou, X and Guo, J and Pandey, M K and Varshney, R K and Huang, L and Luo, H and Liu, N and Chen, W and Lei, Y and Liao, B and Jiang, H (2021) Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies. Frontiers in Plant Science (TSI), 12 (637284). pp. 1-14. ISSN 1664-462X

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336

Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

Raza, A and Tabassum, J and Kudapa, H and Varshney, R K (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology (TSI). pp. 1-24. ISSN 0738-8551

Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067

Singh, S and Kudapa, H and Garg, V and Varshney, R K (2021) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops. BMC Genomics (TSI), 22 (1). pp. 1-23. ISSN 1471-2164

Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

Yadav, O P and Gupta, S K and Govindaraj, M and Sharma, R and Varshney, R K and Srivastava, R K and Rathore, A and Mahala, R S (2021) Genetic Gains in Pearl Millet in India: Insights Into Historic Breeding Strategies and Future Perspective. Frontiers in Plant Science, 12 (645038). pp. 1-15. ISSN 1664-462X

Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

Akpo, E and Ojiewo, C O and Kapran, I and Omoigui, L O and Diama, A and Varshney, R K (2021) Enhancing Smallholder Farmers’ Access to Seed of Improved Legume Varieties Through Multi-Stakeholder Platforms. Springer, Singapore. ISBN 978-981-15-8014-7

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Templer, N and Akpo, E and Vernooy, R and Ojiewo, C O and Njuguna-Mungai, E and Gekanana, R and Varshney, R K (2021) Assessment of Grain Legumes and Dryland Cereals Seed Value Chains in Uganda. Working Paper. ICRISAT.

Bakari, H and Mwalongo, S and Akpo, E and Lukurugu, G A and Nzunda, J and Gekanana, R and Waithira, G and Ojiewo, C O and Varshney, R K (2021) A Business Case for Enhanced Investments in the Groundnut Value Chain in Tanzania. Working Paper. ICRISAT, Hyderabad, India.

Ndossi, J and Kalema, E P and Kimbi, G T and Akpo, E and Kongola, E and Ringo, J and Makoye, L Y and Gekanana, R and Waithira, G and Ojiewo, C O and Varshney, R K (2021) Harnessing Opportunities for Informed Investments in the Sorghum Commodity Value Chain in Tanzania: A Business Case. Working Paper. ICRISAT, Patancheru, ICRISAT.

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

Kimbi, T G and Akpo, E and Kongola, E and Ojiewo, C O and Vernooy, R and Muricho, G and Ringo, J and Lukurugu, G A and Varshney, R K and Tabo, R (2020) A probit Analysis of Determinants of Adoption of Improved Sorghum Technologies Among Farmers in Tanzania. Journal of Agricultural Science (TSI), 13 (1). pp. 73-87. ISSN 1916-9752

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Barmukh, R and Roorkiwal, M and Jaba, J and Chitikineni, A and Mishra, S P and Sagurthi, S R and Munghate, R and Sharma, H C and Varshney, R K (2020) Development of a dense genetic map and QTL analysis for pod borer Helicoverpa armigera (Hübner) resistance component traits in chickpea ( Cicer arietinum L .). The Plant Genome (TSI). pp. 1-15. ISSN 1940-3372

Sab, S and Lokesha, R and Mannur, D M and Somasekhar, S and Jadhav, K and Mallikarjuna, B P and Laxuman, C and Yeri, S and Valluri, V and Bajaj, P and Chitikineni, A and Vemula, A K and Rathore, A and Varshney, R K and Shankergoud, I and Thudi, M (2020) Genome-Wide SNP Discovery and Mapping QTLs for Seed Iron and Zinc Concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition (TSI), 7 (559120). pp. 1-9. ISSN 2296-861X

Saxena, R K and Hake, A and Bohra, A and Khan, A W and Hingane, A and Sultana, R and Singh, I P and Naik, S J S and Varshney, R K (2020) A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Daudi, H and Shimelis, H and Mathew, I and Oteng‐Frimpong, R and Ojiewo, C and Varshney, R K (2020) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Akpo, E and Feleke, G and Fikre, A and Chichaybelu, M and Ojiewo, C O and Varshney, R K (2020) Analyzing Pathways of Nurturing Informal Seed Production into Formal Private Ventures for Sustainable Seed Delivery and Crop Productivity: Experiences from Ethiopia. Sustainability, 12 (6828). pp. 1-18.

Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395

Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Wang, X and Xu, P and Ren, Y and Yin, L and Li, S and Wang, Y and Shi, Y and Li, H and Cao, X and Chi, X and Yu, T and Pandey, M K and Varshney, R K and Yuan, M (2020) Genome-wide identification of meiotic recombination hot spots detected by SLAF in peanut (Arachis hypogaea L.). Scientific Reports (TSI), 10 (1). ISSN 2045-2322

Bohra, A and Chand Jha, U and Godwin, I D and Varshney, R K (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal (TSI). pp. 1-18. ISSN 1467-7644

Liu, H and Liang, X and Lu, Q and Li, H and Liu, H and Li, S and Varshney, R K and Hong, Y and Chen, X (2020) Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition. Scientific Reports (TSI), 10 (1). pp. 1-12. ISSN 2045-2322

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Kumar, N and Bharadwaj, C and Soni, A and Sachdeva, S and Yadav, M C and Pal, M and Soren, K R and Meena, M C and Roorkiwal, M and Varshney, R K and Rana, M (2020) Physio-morphological and molecular analysis for salt tolerance in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 90 (4). pp. 132-136.

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

Baisakh, N and Sachdeva, S and Bharadwaj, C and Singh, R K and Jain, P K and Patil, B S and Roorkiwal, M and Varshney, R K (2020) Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 15 (7). pp. 1-25. ISSN 1932-6203

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

Saxena, R K and Molla, J and Yadav, P and Varshney, R K (2020) High resolution mapping of restoration of fertility (Rf) by combining large population and high density genetic map in pigeonpea [Cajanus cajan (L.) Millsp]. BMC Genomics (TSI), 21 (1). pp. 1-8. ISSN 1471-2164

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Akpo, E and Ojiewo, C O and Melesse, M B and Ganga Rao, N and Mwololo, J and Manyasa, E and Ojulong, H and Harawa, R and Varshney, R K (2020) Aggravated food insecurity in COVID-19 era: quality seed flow of adapted and nutrient-dense varieties is central to the recovery equation in the drylands. Romanian Journal of Applied Sciences and Technology, 2 (5). pp. 62-65. ISSN 2668-778X

Gopalakrishnan, S and Thakur, V and Saxena, R K and Vadlamudi, S and Purohit, S and Kumar, V and Rathore, A and Chitikineni, A and Varshney, R K (2020) Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

Liu, N and Huang, L and Chen, W and Wu, B and Pandey, M K and Luo, H and Zhou, X and Guo, J and Chen, H and Huai, D and Chen, Y and Lei, Y and Liao, B and Ren, X and Varshney, R K and Jiang, H (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping. BMC Genetics (TSI), 21 (1). pp. 1-12. ISSN 1471-2156

Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372

Palit, P and Kudapa, H and Zougmore, R and Kholova, J and Whitbread, A M and Sharma, M and Varshney, R K (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22. pp. 1-12. ISSN 2214-6628

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

Bohar, R and Chitkineni, A and Varshney, R K (2020) Genetic molecular markers to accelerate genetic gains in crops. BioTechniques (TSI), 69 (9). pp. 1-3. ISSN 0736-6205

Palit, P and Ghosh, R and Tolani, P and Tarafdar, A and Chitikineni, A and Bajaj, P and Sharma, M and Kudapa, H and Varshney, R K (2020) Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations. Plant and Cell Physiology (TSI), 61 (8). pp. 1449-1463. ISSN 1471-9053

Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752

Khan, S A and Chen, H and Deng, Y and Chen, Y and Zhang, C and Cai, T and Ali, N and Mamadou, G and Xie, D and Guo, B and Varshney, R K and Zhuang, W (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics (TSI), 133 (7). pp. 2239-2257. ISSN 0040-5752

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

Yu, B and Jiang, H and Pandey, M K and Huang, L and Huai, D and Zhou, X and Kang, Y and Varshney, R K and Sudini, H and Ren, X and Luo, H and Liu, N and Chen, W and Guo, J and Li, W and Ding, Y and Jiang, Y and Lei, Y and Liao, B (2020) Identification of Two Novel Peanut Genotypes Resistant to Aflatoxin Production and Their SNP Markers Associated with Resistance. Toxins (TSI), 12 (156). pp. 1-16. ISSN 2072-6651

Akpo, E and Muricho, G and Lukurugu, G A and Opie, H and Ojiewo, C O and Varshney, R K (2020) Legume seed production for sustainable seed supply and crop productivity: case of groundnut in Tanzania and Uganda. Journal of Crop Improvement (TSI). pp. 1-22. ISSN 1542-7528

Weckwerth, W and Ghatak, A and Bellaire, A and Chaturvedi, P and Varshney, R K (2020) PANOMICS meets germplasm. Plant Biotechnology Journal (TSI), 18 (7). pp. 1507-1525. ISSN 1467-7644

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Sowing Legume Seeds,Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore.

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Jaganathan, D and Bohra, A and Thudi, M and Varshney, R K (2020) Fine mapping and gene cloning in the post-NGS era: advances and prospects. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1791-1810. ISSN 0040-5752

Serba, D D and Yadav, R S and Varshney, R K and Gupta, S K and Govindaraj, M and Srivastava, R K and Gupta, R and Perumal, R and Tesso, T T (2020) Genomic Designing of Pearl Millet: A Resilient Crop for Arid and Semi-arid Environments. In: Genomic Designing of Climate-Smart Cereal Crops. Springer, Cham, Switzerland, pp. 221-286. ISBN 978-3-319-93381-8

Bohra, A and Saxena, K B and Varshney, R K and Saxena, R K (2020) Genomics-assisted breeding for pigeonpea improvement. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1721-1737. ISSN 0040-5752

Pattanashetti, S K and Pandey, M K and Naidu, G K and Vishwakarma, M K and Singh, O K and Shasidhar, Y and Boodi, I H and Biradar, B D and Das, R R and Rathore, A and Varshney, R K and Morris, B (2020) Identification of quantitative trait loci associated with iron deficiency chlorosis resistance in groundnut ( Arachis hypogaea ). Plant Breeding (TSI), 139 (4). pp. 790-803. ISSN 0179-9541

Shasidhar, Y and Variath, M T and Vishwakarma, M K and Manohar, S S and Gangurde, S S and Sriswathi, M and Sudini, H and Dobariya, K L and Bera, S K and Radhakrishnan, T and Pandey, M K and Janila, P and Varshney, R K (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal (TSI), 8 (1). pp. 1-15. ISSN 22145141

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Khan, A W and Garg, V and Roorkiwal, M and Golicz, A A and Edwards, D and Varshney, R K (2020) Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement. Trends in Plant Science (TSI), 25 (2). pp. 148-158. ISSN 1360-1385

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266

Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758

Luo, H and Pandey, M K and Zhi, Y and Zhang, H and Xu, S and Guo, J and Wu, B and Chen, H and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Sudini, H and Varshney, R K and Lei, Y and Liao, B and Jiang, H (2020) Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, C V S and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports (TSI), 10 (1). pp. 1-17. ISSN 2045-2322

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Li, S and Zhu, Y and Varshney, R K and Zhan, J and Zheng, X and Shi, J and Wang, X and Liu, G and Wang, H (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal (TSI), 18 (2). pp. 568-580. ISSN 1467-7644

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Better-off Women Boosting Groundnut Business in Ghana. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 91-104. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Breakthroughs in Groundnut Production Communities in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 77-83. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) A Brief Overview of Smallholder Farmers’ Access to Seed of Improved Legume Varieties. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 1-2. ISBN 978-981-15-0844-8

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Common Bean Value Chain Actors Share Their Feeling About TL Projects in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 33-56. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Concluding Remarks: The Tropical Legumes Projects Empowered Communities in a Wide Variety of Assets. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 105-106. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Empowered Communities Tell Their Own Stories from Common Bean Production in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 65-75. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Enthusiasm of Actors Within the Groundnut Value Chain Sharing Impact Stories in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 57-64. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Impact Stories and Testimonies from Diverse Actors in Groundnut Value Chain in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 3-32. ISBN 978-981-15-0844-8

Ojiewo, C and Akpo, E and Hagmann, J and Varshney, R K (2020) Strategic Framework to Foster Grain Legume and Dryland Cereal Seed Systems Innovations Guidelines to Drive Seed Delivery Systems through Commodity Value Chains. Manual. ICRISAT.

Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Women at the Center of Cowpea Value Chain Development in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 85-90. ISBN 978-981-15-0844-8

Saxena, R K and Kale, S and Mir, R R and Mallikarjuna, N and Yadav, P and Das, R R and Molla, J and Sonnappa, M and Ghanta, A and Narasimhan, Y and Rathore, A and Kumar, C V S and Varshney, R K (2019) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics (TSI), 133 (3). pp. 737-749. ISSN 0040-5752

Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644

Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203

Gaur, P M and Samineni, S and Hingane, A and Sharma, M and Jaba, J and Varshney, R K and Thudi, M and Saxena, R K and Sharma, S S and Bhatnagar, P M and Sharma, K K (2019) Breeding for resistance to diseases and insect pests in grain legumes. In: XIX International Plant Protection Congress, 10-14 November 2019, Hyderabad, Telangana, India.

Saxena, K B and Saxena, R K and Hickey, L T and Varshney, R K (2019) Can a speed breeding approach accelerate genetic gain in pigeonpea? Euphytica (TSI), 215 (12). pp. 1-7. ISSN 0014-2336

Lu, Q and Hong, Y and Li, S and Liu, H and Li, H and Zhang, J and Lan, H and Liu, H and Li, X and Wen, S and Zhou, G and Varshney, R K and Jiang, H and Chen, X and Liang, X (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics (TSI), 20 (1). pp. 1-9. ISSN 1471-2164

Pandey, A K and Sudini, H and Upadhyaya, H D and Varshney, R K and Pandey, M K (2019) Hypoallergen Peanut Lines Identified Through Large-Scale Phenotyping of Global Diversity Panel: Providing Hope Toward Addressing One of the Major Global Food Safety Concerns. Frontiers in Genetics (TSI), 10 (1177). pp. 1-15. ISSN 1664-8021

Rezaei, M K and Deokar, A A and Arganosa, G and Roorkiwal, M and Pandey, S K and Warkentin, T D and Varshney, R K and Tar′an, B (2019) Mapping Quantitative Trait Loci for Carotenoid Concentration in Three F2 Populations of Chickpea. The Plant Genome (TSI), 12 (3). pp. 1-12. ISSN 1940-3372

Luo, H and Pandey, M K and Khan, A W and Wu, B and Guo, J and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (12). pp. 2356-2369. ISSN 1467-7644

Kumar, R and Pandey, M K and Roychoudhry, S and Nayyar, H and Kepinski, S and Varshney, R K (2019) Peg Biology: Deciphering the Molecular Regulations Involved During Peanut Peg Development. Frontiers in Plant Science (TSI), 10 (1289). pp. 1-17. ISSN 1664-462X

Varshney, R K and Godwin, I D and Mohapatra, T and Jones, J D G and McCouch, S R (2019) A SWEET solution to rice blight. Nature Biotechnology (TSI), 37 (11). pp. 1280-1282. ISSN 1087-0156

Kumar, R and Janila, P and Vishwakarma, M K and Khan, A W and Manohar, S S and Gangurde, S S and Variath, M T and Shasidhar, Y and Pandey, M K and Varshney, R K (2019) Whole‐genome resequencing‐based QTL ‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal(TSI). pp. 1-12. ISSN 1467-7644

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Huang, L and Liu, X and Pandey, M K and Ren, X and Chen, H and Xue, X and Liu, N and Huai, D and Chen, Y and Zhou, X and Luo, H and Chen, W and Lei, Y and Liu, K and Xiao, Y and Varshney, R K and Liao, B and Jiang, H (2019) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal (TSI), 18 (3). pp. 779-790. ISSN 1467-7644

Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Choudhary, M and Wani, S H and Kumar, P and Bagaria, P K and Rakshit, S and Roorkiwal, M and Varshney, R K (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics (TSI), 19 (5). pp. 685-701. ISSN 1438-793X

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Varshney, R K and Ojiewo, C O and Monyo, E (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market-demand to benefit smallholder farmers and empowerment of national programmes in sub-Saharan Africa and South Asia. Plant Breeding (TSI), 138 (4). pp. 379-388. ISSN 01799541

Luo, H and Pandey, M K and Khan, A W and Guo, J and Wu, B and Cai, Y and Huang, L and Zhou, X and Chen, Y and Chen, W and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (7). pp. 1248-1260. ISSN 1467-7644

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811

Zwart, R S and Thudi, M and Channale, S and Manchikatla, P K and Varshney, R K and Thompson, J P (2019) Resistance to Plant-Parasitic Nematodes in Chickpea: Current Status and Future Perspectives. Frontiers in Plant Science (TSI), 10 (966). pp. 1-14. ISSN 1664-462X

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Pandey, A K and Varshney, R K and Sudini, H K and Pandey, M K (2019) An Improved Enzyme-Linked Immunosorbent Assay (ELISA) Based Protocol Using Seeds for Detection of Five Major Peanut Allergens Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8. Frontiers in Nutrition (TSI), 6 (68). pp. 1-11. ISSN 2296-861X

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Gumma, M K and Tsusaka, T W and Mohammed, I and Chavula, G and Ganga Rao, N V P R and Okori, P and Ojiewo, C O and Varshney, R K and Siambi, M and Whitbread, A M (2019) Monitoring Changes in the Cultivation of Pigeonpea and Groundnut in Malawi Using Time Series Satellite Imagery for Sustainable Food Systems. Remote Sensing (TSI), 11(12) (1475). pp. 1-23. ISSN 2072-4292

Saxena, K B and Choudhary, A K and Srivastava, R K and Bohra, A and Saxena, R K and Varshney, R K (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding (TSI), 138 (3). pp. 243-251. ISSN 0179-9541

Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644

Sachdeva, S and Bharadwaj, C and Singh, S and Roorkiwal, M and Sharma, V and Singh, A and Varshney, R K (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences (TSI), 89 (5). pp. 834-841. ISSN 0019-5022

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Dodia, S M and Joshi, B and Gangurde, S S and Thirumalaisamy, P P and Mishra, G P and Narandrakumar, D and Soni, P and Rathnakumar, A L and Dobaria, J R and Sangh, C and Chitikineni, A and Chanda, S V and Pandey, M K and Varshney, R K and Thankappan, R (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics (TSI), 132 (4). pp. 1001-1016. ISSN 0040-5752

Divya, C and Gaurav, A and Hui, W and Pandey, M K and Culbreath, A K and Varshney, R K and Guo, B (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144. ISSN 0250-5371

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Yadav, P and Saxena, K B and Hingane, A J and Sameer Kumar, C V and Kandalkar, V S and Varshney, R K and Saxena, R K (2019) An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea. BMC Genomics (TSI), 20 (1). pp. 1-10. ISSN 1471-2164

Yu, B and Huai, D and Huang, L and Kang, Y and Ren, X and Chen, Y and Zhou, X and Luo, H and Liu, N and Chen, W and Lei, Y and Pandey, M K and Sudini, H and Varshney, R K and Liao, B and Jiang, H (2019) Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.). BMC Genetics (TSI), 20 (1). pp. 1-13. ISSN 1471-2156

Jain, A and Roorkiwal, M and Kale, S and Garg, V and Yadala, R and Varshney, R K (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE (TSI), 14 (3). pp. 1-13. ISSN 1932-6203

Godwin, I D and Rutkoski, J and Varshney, R K and Hickey, L T (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics (TSI), 132 (3). pp. 555-557. ISSN 0040-5752

Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Obala, J and Saxena, R K and Singh, V K and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics (TSI), 294 (1). pp. 57-68. ISSN 1617-4615

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY, 21 (3). pp. 491-498. ISSN 1814–9596 (In Press)

Abbai, R and Singh, V K and Nachimuthu, V V and Sinha, P and Selvaraj, R and Vipparla, A K and Singh, A K and Singh, U M and Varshney, R K and Kumar, A (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal (TSI), 17 (8). pp. 1612-1622. ISSN 14677644

Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. International Journal of Agriculture and Biology. pp. 1-8. ISSN 1814–9596 (In Press)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Bohra, A and Pareek, S and Jones, M and Jha, U C and Naik, S J S and Kaashyap, M and Patil, P G and Maurya, A K and Saxena, R K and Varshney, R K (2019) Genomic Interventions to Improve Resilience of Pigeonpea in Changing Climate. In: Genomic Designing of Climate-Smart Pulse Crops. Springer Nature, Switzerland, pp. 107-134. ISBN 978-3-319-96931-2

Saxena, R K and Saxena, K B and Varshney, R K (2019) Pigeonpea (Cajanus cajan L. Millsp.): An Ideal Crop for Sustainable Agriculture. In: Advances in Plant Breeding Strategies: Legumes. Springer Nature, Switzerland, pp. 409-429. ISBN 978-3-030-23399-0

Saxena, K B and Saxena, R K and Sharma, S and Sameer Kumar, C V and Sultana, R and von Wettberg, E B and Varshney, R K (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica (TSI), 214 (12). pp. 1-20. ISSN 0014-2336

Saxena, R K and Rathore, A and Bohra, A and Yadav, P and Das, R R and Khan, A W and Singh, V K and Chitikineni, A and Singh, I P and Sameer Kumar, C V and Varshney, R K (2018) Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. The Plant Genome (TSI), 11 (3). pp. 1-10. ISSN 1940-3372

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Khera, P and Pandey, M K and Mallikarjuna, N and Sriswathi, M and Roorkiwal, M and Janila, P and Sharma, S and Shilpa, K and Sudini, H and Guo, B and Varshney, R K (2018) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics (TSI). pp. 1-14. ISSN 1617-4615

Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X

Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266

Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X

Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X

Singh, S and Gupta, S K and Thudi, M and Das, R R and Anil Kumar, V and Garg, V and Varshney, R K and Rathore, A and Pahuja, S K and Yadav, D V (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet. Crop Science (TSI), 58 (6). pp. 2379-2390. ISSN 0011-183X

Janila, P and Radhakrishnan, T and Murali, T V and Bera, S K and Dobariya, K L and Nigam, S N and Varshney, R K and Pandey, M K and Manohar, S S and Manivannan, N and Vasanthi, R P (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, October 10 - 12, 2018, Stellenbosch, South Africa.

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

Varshney, R K and Pandey, M K and Chitikineni, A (2018) Plant Genetics and Molecular Biology. Advances in Biochemical Engineering/Biotechnology book series (ABE, volume 164) . Springer. ISBN 978-3-319-91312-4

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Bharadwaj, C and Sachdeva, S and Singh, R K and Patil, B S and Roorkiwal, M and Chaturvedi, S and Varshney, R K (2018) Chickpea Genomics. In: Biotechnologies of Crop Improvement, Volume 3 : Genomic Approaches. Springer, pp. 289-316. ISBN 978-3-319-94745-7

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

Pandey, M K and Varshney, R K (2018) Groundnut Entered Post-genome Sequencing Era: Opportunities and Challenges in Translating Genomic Information from Genome to Field. In: Biotechnologies of Crop Improvement, Volume 3 : Genomic Approaches. Springer, pp. 199-209. ISBN 978-3-319-94745-7

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

Varshney, R K and Tuberosa, R and Tardieu, F (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany (TSI), 69 (13). pp. 3175-3179. ISSN 0022-0957

Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640

Mahdavi Mashaki, K and Garg, V and Ghomi, A A N and Kudapa, H and Chitikineni, A and Zaynali Nezhad, K and Yamchi, A and Soltanloo, H and Varshney, R K and Thudi, M (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE (TSI), 13 (6). pp. 1-17. ISSN 1932-6203

Lu, Q and Li, H and Hong, Y and Zhang, G and Wen, S and Li, X and Zhou, G and Li, S and Liu, H and Liu, H and Liu, Z and Varshney, R K and Chen, X and Liang, X (2018) Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). Frontiers in Plant Science (TSI), 9 (604). pp. 1-15. ISSN 1664-462X

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

Saxena, K B and Choudhary, A K and Saxena, R K and Varshney, R K (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science (TSI), 68 (2). pp. 159-167. ISSN 1344-7610

Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322

Ye, H and Roorkiwal, M and Valliyodan, B and Zhou, L and Chen, P and Varshney, R K and Nguyen, H T (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany (TSI), 69 (13). pp. 3267-3277. ISSN 0022-0957

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947

Varshney, R K and Pandey, M K and Chitikineni, A (2018) Plant Genetics and Molecular Biology: An Introduction. In: Advances in Biochemical Engineering/Biotechnology. Advances in Biochemical Engineering/Biotechnology book series . Springer, Berlin, pp. 1-9.

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology (TSI), 18(1) (29). pp. 1-18. ISSN 1471-2229

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Gayathri, M and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1) (10). pp. 1-6. ISSN 1756-0500

Khedikar, Y and Pandey, M K and Sujay, V and Singh, S and Nayak, S N and Klein-Gebbinck, H W and Sarvamangala, C and Mukri, G and Garg, V and Upadhyaya, H D and Nadaf, H L and Gowda, M V C and Varshney, R K and Bhat, R S (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding (TSI), 38(1) (7). pp. 1-12. ISSN 1380-3743

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Paul, P J and Samineni, S and Sajja, S and Rathore, A and Das, R R and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica (TSI), 214(2) (27). pp. 1-27. ISSN 0014-2336

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621

Obala, J and Saxena, R K and Singh, V K and Vechalapu, S and Das, R R and Rathore, A and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian journal of crop science, 12 (12). pp. 1859-1865. ISSN 1835-2707

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Saxena, R K and Patel, K and Sameer Kumar, C V and Tyagi, K and Saxena, K B and Varshney, R K (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics (TSI). pp. 1-10. ISSN 0040-5752

Varshney, R K and Pandey, M K and Chitikineni, A (2018) Plant Genetics and Molecular Biology: An Introduction. In: Plant Genetics and Molecular Biology. Advances in Biochemical Engineering/Biotechnology book series (ABE, volume 164) . Springer, pp. 1-9. ISBN 978-3-319-91312-4

Kudapa, H and Garg, V and Chitikineni, A and Varshney, R K (2018) The RNA-Seq based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development. Plant, Cell & Environment (TSI). pp. 1-17. ISSN 0140-7791

Chaturvedi, S K and Jha, S K and Singh, N P and Gaur, P M and Varshney, R K (2018) Technological And Policy Intervention For Increasing Chickpea Production In India. Pulse India, 8 (1). pp. 7-12.

Vishwakarma, M K and Kale, S M and Sriswathi, M and Naresh, T and Shasidhar, Y and Garg, V and Pandey, M K and Varshney, R K (2017) Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis. Frontiers in Plant Science, 8 (2064). pp. 1-13. ISSN 1664-462X

Zhao, J and Huang, L and Ren, X and Pandey, M K and Wu, B and Chen, Y and Zhou, X and Chen, W and Xia, Y and Li, Z and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2017) Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Frontiers in Plant Science, 8 (2105). pp. 1-13. ISSN 1664-462X

Jain, A and Roorkiwal, M and Pandey, M K and Varshney, R K (2017) Current Status and Prospects of Genomic Selection in Legumes. In: Genomic Selection for Crop Improvement : New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing, pp. 131-147. ISBN 978-3-319-63168-4

Varshney, R K and Roorkiwal, M and Sorrells, M E (2017) Genomic Selection for Crop Improvement: An Introduction. In: Genomic Selection for Crop Improvement : New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing, pp. 1-6. ISBN 978-3-319-63168-4

Varshney, R K and Roorkiwal, M and Sorrells, M E (2017) Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer International Publishing. ISBN 978-3-319-63168-4

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

Roorkiwal, M and Jain, A and Kale, S M and Doddamani, D and Chitikineni, A and Thudi, M and Varshney, R K (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal. pp. 1-12. ISSN 14677644

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Saxena, R K and Obala, J and Sinjushin, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784. ISSN 0040-5752

Zongo, A and Khera, P and Sawadogo, M and Shasidhar, Y and Sriswathi, M and Vishwakarma, M K and Sankara, P and Ntare, B R and Varshney, R K and Pandey, M K and Desmae, H (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15. pp. 132-137. ISSN 2215017X

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052

Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X

Pratap, A and Chaturvedi, S K and Tomar, R and Rajan, N and Malviya, N and Thudi, M and Saabale, P R and Prajapati, U and Varshney, R K and Singh, N P (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics. pp. 1-9. ISSN 1617-4615

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 (1140). pp. 1-10. ISSN 1664-462X

Halder, U and Banerjee, A and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). pp. 1-2. ISSN 2169-8287

Iquebal, M A and Soren, K R and Gangwar, P and Shanmugavadivel, P S and Aravind, K and Singla, D and Jaiswal, S and Jasrotia, R S and Chaturvedi, S K and Singh, N P and Varshney, R K and Rai, A and Kumar, D (2017) Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. Frontiers in Plant Science, 8 (958). pp. 1-12. ISSN 1664-462X

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

Shasidhar, Y and Vishwakarma, M K and Pandey, M K and Janila, P and Variath, M T and Manohar, S S and Nigam, S N and Guo, B and Varshney, R K (2017) Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (794). pp. 1-14. ISSN 1664-462X

Pazhamala, L T and Purohit, S and Saxena, R K and Garg, V and Krishnamurthy, L and Verdier, J and Varshney, R K (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054. ISSN 0022-0957

Garg, V and Agarwal, G and Pazhamala, L T and Nayak, S N and Kudapa, H and Khan, A W and Doddamani, D and Sharma, M and Kavi Kishor, P B and Varshney, R K (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Frontiers in Plant Science, 8 (488). pp. 1-16. ISSN 1664-462X

Thudi, M and Saxena, R K and Pandey, M K and Varshney, R K (2017) Legume genomics: A perspective. In: Insights on Global Challenges and Opportunities for the Century Ahead. BS Publications, Hyderabad, pp. 321-326. ISBN 978‐93‐5230‐186‐7

Tardieu, F and Varshney, R K and Tuberosa, R (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398. ISSN 0022-0957

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290

Chichaybelu, M and Eshete, M and Korbu, L and Mohammed, R and Girma, N and Bekele, D and Geleta, T and Fikre, A and Ganga Rao, N V P R and Ojiewo, C O and Monyo, E and Gaur, P M and Varshney, R K (2017) Advances in chickpea crop improvement for improved productivity and resilient cropping systems in Ethiopia. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S B and Varshney, R K and Zhuang, W J (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Ruperao, P and Bayer, P and Kenneth Chan, C K and Hayashi, S and Roorkiwal, M and Chitikineni, A and Sutton, T and Batley, J and Varshney, R K and Edwards, D (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Somanaboina, A K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Development of transgenic tomato (Solanum lycoperscicum L.) by heterologous expression of osmotin-like protein (OLP) and chitinase (Chi11) genes for salt and drought stress tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Fountain, J C and Bajaj, P and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Scully, B T and Kemerait, R C and Varshney, R K and Guo, B (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Chaturvedi, S K and Singh, N P and Gaur, P M and Mishra, N and Alok, D and Sumit, S and Varshney, R K (2017) Efforts and strategies for alleviation of drought tolerance in chickpea in India. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Thudi, M and Gaur, P M and Krishnamurthy, L and Samineni, S and Varshney, R K (2017) Enhancing drought tolerance in chickpea using genomics approaches. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kale, S M and Jaganathan, D and Roorkiwal, M and Thudi, M and Purushothaman, R and Praveenkumar, M and Krishnamurthy, L and Kavi Kishor, P B and Gaur, P M and Varshney, R K (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Palavalasa, H K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Genome wide analysis of sodium transporters and expression of Na+/H+-antiporter-like protein (SbNHXLP) gene in tomato for salt tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sinha, P and Saxena, R K and Singh, V K and Khan, A W and Upadhyaya, H D and Desai, A and Sameer Kumar, C V and Varshney, R K (2017) Haplotype for drought responsive genes in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mishra, N and Monyo, E S and Varshney, R K (2017) Harnessing the power of social media to reach the unreached: knowledge dissemination for greater impact of tropical legumes. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2017) High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sameer Kumar, C V and Hingane, A J and Shruthi, H B and Sharma, M and Sudhakar, C and Nagesh Kumar, M V and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P (2017) Hybrid pigeonpea: best bet for maximizing productivity in dry lands. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Singh, S K and Kale, S M and Saxena, R K and Sinha, P and Parupalli, S and Suryanaraya, V and Obala, J and Sameer Kumar, C V and Varshney, R K (2017) Identification and validation of insertion–deletion polymorphisms in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Yadav, P and Saxena, R K and Kandalkar, V S and Sameer Kumar, C V and Varshney, R K (2017) Identification of genes and genomic segments for cleistogamy in Pigeonpea(Cajanus cajan L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kaoneka, S R and Saxena, R K and Singh, V K and Sameer Kumar, C V and Shimelis, H A and Varshney, R K (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Liao, B and Lei, Y and Jiang, H and Yan, L and Wan, L and Huang, L and Zhou, X and Luo, H and Chen, Y and Wang, H and Pandey, M K and Sudini, H and Upadhyaya, H D and Varshney, R K (2017) Management of aflatoxin contamination in groundnut by enhancing host-plant resistance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kudapa, H and Agarwal, G and Chitikineni, A and Gaur, P M and Krishnamurthy, L and Varshney, R K (2017) Mining for heat stress responsive genes by RNA-Seq based comprehensive gene expression analyses in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular mapping of flowering time genes in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, V and Sameer Kumar, C V and Tongoona, P and Sibiya, J and Saxena, K B and Varshney, R K (2017) Molecular mapping of seed protein content in pigeonpea – a drought tolerant crop of the semi-arid tropics. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Puppala, N and Xavier, A and Garg, V and Nayak, S N and Pandey, M K and Varshney, R K and Layland, N and Payton, P and Holbrook, C (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pazhamala, L T and Saxena, R K and Purohit, S and Bajaj, P and Kumar, V and Garg, V and Srikanth, S and Hingane, A J and Kulshreshtha, A and Krishnamurthy, L and Sameer Kumar, C V and Verdier, J and Varshney, R K (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kimurto, P and Oyier, M and Mulwa, R and Songok, S and Towett, B and Cheruiyot, E and Varshney, R K and Gaur, P M and Mahender, T and Ganga Rao, N V P R and Silim, S and Siambi, M (2017) Performance of marker assisted backcross breeding (MABC) elite chickpea lines under drought conditions in Kenya. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644

Shruthi, H B and Hingane, A J and ReddiSekhar, M and Srivarsha, J and Bhosle, T M and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P and Sameer Kumar, C V (2017) Super early pigeonpea varities and hybrids: New intervener for maximized, time specific dry land production. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Luo, H and Ren, X and Li, Z and Xu, Z and Li, X and Huang, L and Zhou, X and Chen, Y and Chen, W and Lei, Y and Liao, B and Pandey, M K and Varshney, R K and Guo, B and Jiang, X and Liu, F and Jiang, H (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (58). pp. 1-12. ISSN 1471-2164

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Roorkiwal, M and Jain, A and Thudi, M and Varshney, R K (2017) Advances in Chickpea Genomic Resources for Accelerating the Crop Improvement. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 53-67. ISBN 978-3-319-66115-5

Sameer Kumar, C V and Satheesh Naik, S J and Mohan, N and Saxena, R K and Varshney, R K (2017) Botanical Description of Pigeonpea [Cajanus Cajan (L.) Millsp.]. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 17-29. ISBN 978-3-319-63795-2

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-66115-5

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome: An Introduction. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-66115-5

Vishwakarma, M K and Nayak, S N and Guo, B and Wan, L and Liao, B and Varshney, R K and Pandey, M K (2017) Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) (169). Springer, pp. 93-116. ISBN 978-3-319-63933-8

Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X

Jain, A and Roorkiwal, M and Pandey, M K and Varshney, R K (2017) Current Status and Prospects of Genomic Selection in Legumes. In: Genomic Selection for Crop Improvement: New Molecular Breeding Strategies for Crop Improvement. Springer, pp. 131-147. ISBN 978-3-319-63170-7

Varshney, R K and Saxena, R K and Jackson, S A (2017) Future Prospects. In: The Pigeonpea Genome. Part of the Compendium of Plant Genomes book series (CPG) . Springer, pp. 99-104. ISBN 978-3-319-63795-2

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) Future Prospects for Chickpea Research. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-142. ISBN 978-3-319-66115-5

Varshney, R K and Pandey, M K and Puppala, N (2017) Future Prospects for Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 165-169. ISBN 978-3-319-63933-8

Parupalli, S and Saxena, R K and Sameer Kumar, C V and Sharma, M and Singh, V K and Vechalapu, S and Kavi Kishor, P B and Saxena, K B and Varshney, R K (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244. ISSN 0970-6380

Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Sharma, S and Pandey, M K and Sudini, H and Upadhyaya, H D and Varshney, R K (2017) Harnessing Genetic Diversity of Wild Arachis Species for Genetic Enhancement of Cultivated Peanut. Crop Science, 57 (3). pp. 1121-1131. ISSN 0011-183X

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Samineni, S and Thudi, M and Sajja, S and Varshney, R K and Gaur, P M (2017) Impact of Genomics on Chickpea Breeding. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 125-134. ISBN 978-3-319-66115-5

Singh, V K and Khan, A W and Saxena, R K and Sinha, P and Kale, S M and Parupalli, S and Kumar, V and Chitikineni, A and Vechalapu, S and Sameer Kumar, C V and Sharma, M and Ghanta, A and Yamini, K N and Muniswamy, S and Varshney, R K (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal. pp. 1-9. ISSN 1467-7644

Saxena, K B and Saxena, R K and Varshney, R K (2017) Key Plant and Grain Characteristics and Their Importance in Breeding and Adaptation of Pigeonpea Cultivars. In: The Pigeonpea Genome. Springer, pp. 5-15. ISBN 978-3-319-63795-2

Bohra, A and Pareek, S and Jha, R and Saxena, R K and Singh, I P and Pandey, G and Mishra, R K and Singh, F and Kaashyap, M and Joshi, R and Varshney, R K (2017) Modern Genomic Tools for Pigeonpea Improvement: Status and Prospects. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 41-54. ISBN 978-3-319-63795-2

Mir, R R and Rather, I A and Bhat, M A and Parray, G A and Varshney, R K (2017) Molecular Mapping of Genes and QTLs in Pigeonpea. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 55-64. ISBN 978-3-319-63795-2

Bohra, A and Jha, R and Pandey, G and Patil, P G and Saxena, R K and Singh, I P and Singh, D and Mishra, R K and Mishra, A and Singh, F and Varshney, R K and Singh, N P (2017) New Hypervariable SSR Markers for Diversity Analysis, Hybrid Purity Testing and Trait Mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 (377). pp. 1-15. ISSN 1664-462X

Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Varshney, R K and Pandey, M K and Puppala, N (2017) The Peanut Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-63933-8

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome. Compendium of Plant Genomes . Springer International Publishing, pp. 1-4. ISBN 978-3-319-63795-2

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome: An Overview. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-63795-2

Saxena, R K and Sameer Kumar, C V and Bohra, A and Singh, I P and Singh, N P and Varshney, R K (2017) Pigeonpea Research for Enhancing Crop Productivity. Pulse India, 2 (7). pp. 8-10.

Thudi, M and Varshney, R K (2017) Requirement of Whole-Genome Sequencing and Background History of the National and International Genome Initiatives. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 107-115. ISBN 978-3-319-66115-5

Nayak, S N and Pandey, M K and Jackson, S A and Liang, X and Varshney, R K (2017) Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-147. ISBN 978-3-319-63933-8

Singh, V K and Saxena, R K and Varshney, R K (2017) Sequencing Pigeonpea Genome. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 93-97. ISBN 978-3-319-63795-2

Khan, A W and Thudi, M and Varshney, R K and Edwards, D (2017) Sequencing the Chickpea Genome. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-123. ISBN 978-3-319-66115-5

Saxena, K B and Saxena, R K and Varshney, R K (2017) Use of immature seed germination and single seed descent for rapid genetic gains in pigeonpea. Plant Breeding. pp. 1-4. ISSN 01799541

Saxena, R K and Varshney, R K (2017) Whole-Genome Sequencing of Pigeonpea: Requirement, Background History, Current Status and Future Prospects for Crop Improvement. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 81-91. ISBN 978-3-319-63795-2

Mallikarjuna, N and Saxena, R K and Byre Gowda, M and Varshney, R K (2017) Wide Crossing Technology for Pigeonpea Improvement. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 31-39. ISBN 978-3-319-63795-2

Huang, L and Ren, X and Wu, B and Li, X and Chen, W and Zhou, X and Chen, Y and Pandey, M K and Jiao, Y and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2016) Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports, 6 (39478). pp. 1-10. ISSN 2045-2322

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X

Janila, P and Rupavatharam, S and Sameer Kumar, C V and Samineni, S and Gaur, P M and Varshney, R K (2016) Technologies for Intensification of Production and Uses of Grain Legumes for Nutrition Security. Proceedings of the Indian National Science Academy, 82 (5). pp. 1541-1553. ISSN 0370-0046

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Sharma, M and Sengupta, A and Ghosh, R and Agarwal, G and Tarafdar, A and Nagavardhini, A and Pande, S and Varshney, R K (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (37353). 01-11. ISSN 2045-2322

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Pazhamala, L T and Agarwal, G and Bajaj, P and Kumar, V and Kulshreshtha, A and Saxena, R K and Varshney, R K (2016) Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLOS ONE, 11 (10). 01-17. ISSN 1932-6203

Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X

Samineni, S and Kamatam, S and Thudi, M and Varshney, R K and Gaur, P M (2016) Vernalization response in chickpea is controlled by a major QTL. Euphytica, 207 (2). pp. 453-461. ISSN 0014-2336

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X

Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

Gumma, M K and Kumara Charyulu, D and Mohammed, I and Varshney, R K and Gaur, P M and Whitbread, A M (2016) Satellite imagery and household survey for tracking chickpea adoption in Andhra Pradesh, India. International Journal of Remote Sensing, 37 (08). pp. 1955-1972. ISSN 1366-5901

Janila, P and Pandey, M K and Manohar, S S and Variath, M T and Nallathambi, P and Nadaf, H L and Sudini, H and Varshney, R K (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (03). pp. 355-366. ISSN 1439-0523

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Vishwakarma, M K and Pandey, M K and Shasidhar, Y and Manohar, S S and Nagesh, P and Janila, P and Varshney, R K (2016) Identification of two major quantitative trait locus for fresh seed dormancy using the diversity arrays technology and diversity arrays technology-seq based genetic map in Spanish-type peanuts. Plant Breeding, 135. pp. 367-375. ISSN 0179-9541

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Gaur, P M and Singh, M K and Samineni, S and Sajja, S and Jukanti, A K and Kamatam, S and Varshney, R K (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209. pp. 253-260. ISSN 1573-5060

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Thudi, M and Khan, A W and Kumar, V and Gaur, P M and Katta, K and Garg, V and Roorkiwal, M and Samineni, S and Varshney, R K (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (10). pp. 53-64. ISSN 1471-2229

Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652

Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322

Varshney, R K (2016) Exciting journey of 10 years from genomes to fields and markets: some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut. Plant Science, 242. pp. 98-107. ISSN 0168-9452

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Saxena, K B and Sameer Kumar, C V and Saxena, R K and Vijay Kumar, R and Singh, I P and Hingane, A J and Mula, M G and Patil, S B and Varshney, R K (2016) Hybrid pigeonpea: Accomplishments and challenges for the next decade. Legume Perspectives (11). pp. 30-32. ISSN 2340-1559

Sinha, P and Pazhamala, L T and Singh, V K and Saxena, R K and Krishnamurthy, L and Azam, S and Khan, A W and Varshney, R K (2016) Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 06 (1065). 01-10. ISSN 1664-462X

Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452

Sameer Kumar, C V and Singh, I P and Vijay Kumar, R and Patil, S B and Tathineni, R and Mula, M G and Saxena, R K and Hingane, A J and Rathore, A and Ravinder Reddy, CH and Nagesh Kumar, M and Sudhakar, C and Varshney, R K (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). 08-10. ISSN 2340-1559

Mula, M G and Sameer Kumar, C V and Ravinder Reddy, CH and Monyo, E and Saxena, R K and Varshney, R K (2016) Pigeonpea seed systems in Asia. Legume Perspectives (11). pp. 44-45. ISSN 2340-1559

Saxena, R K and Saxena, K B and Sameer Kumar, C V and Singh, N P and Varshney, R K (2016) Strategies for pigeonpea improvement. Legume Perspectives (11). pp. 50-51. ISSN 2340-1559

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Jacob, S and Sajjalaguddam, R R and Kumar, K V K and Varshney, R K and Sudini, H (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology. pp. 1-9. ISSN 1610-739X

Banerjee, A and Halder, U and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2016) Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. Genome Announcements, 4 (6). pp. 1-2. ISSN 2169-8287

Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382

Kumar, V and Khan, A W and Saxena, R K and Garg, V and Varshney, R K (2016) First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (08). pp. 1673-1681. ISSN 1467-7652

Saxena, R K and Thudi, M and Varshney, R K (2016) Genomics, trait mapping and molecular breeding in pigeonpea and chickpea. Indian Journal of Genetics and Plant Breeding, 76 (4). pp. 504-511. ISSN 0019-5200

Saxena, K B and Sameer Kumar, C V and Hingane, A J and Nagesh Kumar, M V and Vijaykumar, R and Saxena, R K and Patil, S and Varshney, R K (2016) Hybrid ICPH 2740 assures quantum jump in pigeonpea productivity in peninsular India. Journal of Food Legumes, 29 (2). pp. 142-144. ISSN 0970-6380

Sameer Kumar, C V and Wani, S P and Nagesh Kumar, M V and Jaganmohan Rao, P and Saxena, K B and Hingane, A J and Sudhakar, C and Pushpavalli, S N V C L and Yamini, K N and Shruthi, H B and Saxena, R K and Varshney, R K (2016) Hybrid Technology–a new vista in pigeonpea breeding. The Journal of Research PJTSAU, 44 (4). pp. 1-13. ISSN 2395-5945

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S and Zheng, Y and Ma, S and Tang, R and Varshney, R K and Zhuang, W (2016) Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnol Journal, 14 (2). pp. 682-698. ISSN 2349-6738

Wani, S P and Bergvinson, D and Raju, K V and Gaur, P M and Varshney, R K (2016) Mission India for Transforming Agriculture (MITrA),Research Report IDC-4. Technical Report. ICRISAT, Patancheru.

Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644

Kaoneka, S R and Saxena, R K and Silim, S N and Odeny, D A and Ganga Rao, N V P R and Shimelis, H A and Siambi, M and Varshney, R K (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154. ISSN 1439-0523

Kolekar, R M and Sujay, V and Shirasawa, K and Sukruth, M and Khedikar, Y P and Gowda, M V C and Pandey, M K and Varshney, R K and Bhat, R S (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156. ISSN 0014-2336

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Monyo, E S and Varshney, R K (2016) Seven seasons of learning and engaging smallholder farmers in the drought-prone areas of sub-Saharan Africa and South Asia through Tropical Legumes, 2007–2014. ICRISAT, Patancheru. ISBN 978-92-9066-568-7

Ramalingam, A and Kudapa, H and Pazhamala, L T and Garg, V and Varshney, R K (2015) Gene Expression and Yeast Two-Hybrid Studies of 1R-MYB Transcription Factor Mediating Drought Stress Response in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 (1117). 01-10. ISSN 1664-462X

Ramalingam, A and Kudapa, H and Pazhamala, L T and Weckwerth, W and Varshney, R K (2015) Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Frontiers in Plant Science, 6 (1116). 01-21. ISSN 1664-462X

Sinha, P and Saxena, R K and Singh, V K and Krishnamurthy, L and Varshney, R K (2015) Selection and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) under Heat and Salt Stress Conditions. Frontiers in Plant Science, 6 (1071). 01-10. ISSN 1664-462X

Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

Sajja, S and Samineni, S and Gadekar, M and Jayalakshmi, V and Vijayakumar, A and Yasin, M and Varshney, R K (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Samineni, S and Varshney, R K and Sajja, S and Thudi, M and Jayalakshmi, V and Vijayakumar, A and Mannur, D M (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Bhat, R S and Kolekar, R M and Asha, B and Sukruth, M and Shirasawa, K and Sujay, V and Khedikar, Y and Sarvamangala, C and Gowda, M V C and Motagi, B N and Varshney, R K (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Sameer Kumar, C V and Nagesh Kumar, M V and Sudhakar, C and Saxena, R K and Varshney, R K (2015) Crop specific traits of Pigeonpea [Cajanus cajan (L.) Millspaugh) and their implications in seed production. In: 8th National Seed Congress, October 27-29, 2015, Hyderabad.

Katta, M A V S K and Khan, A W and Doddamani, D and Thudi, M and Varshney, R K (2015) NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data. PLOS One, 10 (10). pp. 1-9. ISSN 1932-6203

Reddy, P S and Jogeswar, G and Rasineni, G K and Maheswari, M and Reddy, A R and Varshney, R K and Kavi Kishor, P B (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94. pp. 104-113. ISSN 0981-9428

Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Broad-Spectrum Streptomyces sp. for Plant Growth Promotion Traits in Chickpea (Cicer arietinum L.). Philippine Agricultural Scientist, 98 (3). pp. 270-278. ISSN 0031-7454

Saxena, R K and Saxena, K B and Pazhamala, L T and Patel, K and Parupalli, S and Sameer Kumar, C V and Varshney, R K (2015) Genomics for greater efficiency in pigeonpea hybrid breeding. Frontiers in Plant Science. ISSN 1664-462X

Khera, P and Saxena, R K and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2015) Mitochondrial SSRs and their utility in distinguishing wild species, CMS lines and maintainer lines in pigeonpea (Cajanus cajan L.). Euphytica. pp. 1-10. ISSN 1573-5060

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Sinha, P and Saxena, K B and Saxena, R K and Singh, V K and Suryanarayana, V and Sameer Kumar, C V and Katta, M A V S and Khan, A W and Varshney, R K (2015) Association of Gene with Cytoplasmic Male Sterility in Pigeonpea. The Plant Genome, 8 (2). pp. 1-12. ISSN 1940-3372

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

Srikanth, S and Saxena, R K and Rao, M V and Varshney, R K and Mallikarjuna, N (2015) Development of a new CMS system in pigeonpea utilizing crosses with Cajanus lanceolatus (WV Fitgz) van der Maesen. Euphytica, 204 (02). pp. 289-302. ISSN 1573-5060

Jadhav, A A and Rayate, S J and Mhase, L B and Thudi, M and Chitikineni, A and Harer, P N and Jadhav, A S and Varshney, R K and Kulwal, P L (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics. ISSN 0973-7731

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060

Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Organic Agriculture, 5 (2). pp. 123-133. ISSN 1879-4238

Deokar, A A and Kondawar, V and Kohli, D and Aslam, M and Jain, P K and Karuppayil, S M and Varshney, R K and Srinivasan, R (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46. ISSN (ISSN: 1438-793X, ESSN: 1438-7948)

Sameer Kumar, C V and Singh, I P and Patil, S B and Mula, M G and Kumar, R V and Saxena, R K and Varshney, R K (2015) Recent advances in Pigeonpea [Cajanus cajan (L.) Millspaugh) Research. In: II International Conference on Bio-Resource and Stress Management, January 07 - 10, 2015, Hyderabad.

Kashiwagi, J and Krishnamurthy, L and Purushothaman, R and Upadhyaya, H D and Gaur, P M and Gowda, C L L and Ito, O and Varshney, R K (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 (-). pp. 47-54. ISSN 1872-6852

Gaur, P M and Samineni, S and Tripathi, S and Varshney, R K and Gowda, C L L (2015) Allelic relationships of flowering time genes in chickpea. Euphytica, 203 (2). pp. 295-308. ISSN 0014-2336

Purushothaman, R and Thudi, M and Krishnamurthy, L and Upadhyaya, H D and Kashiwagi, J and Gowda, C L L and Varshney, R K (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174. pp. 1-11. ISSN 0378-4290

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Hickey, J M and Gorjanc, G and Varshney, R K and Nettelblad, C (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov model. Crop Science, 55. pp. 1-13. ISSN 0011-183X

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

Jenko, J and Gorjanc, G and Cleveland, M A and Varshney, R K and Whitelaw, C B A and Woolliams, J A and Hickey, J M (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (55). pp. 1-34. ISSN 0999-193X

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

Sukruth, M and Paratwagh, S A and Sujay, V and Kumari, V and Gowda, M V C and Nadaf, H L and Motagi, B N and Lingaraju, S and Pandey, M K and Varshney, R K and Bhat, R S (2015) Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica, 204 (2). pp. 343-351. ISSN 0014-2334

Varshney, R K (2015) Young researchers need to focus more on agriculture : Interview of Dr. R K Varshney. Bio Spectrum, 13 (11-12). pp. 78-79.

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

Sameer Kumar, C V and Mula, M G and Singh, P and Mula, R P and Saxena, R K and Ganga Rao, N V P R and Varshney, R K (2014) Pigeonpea Perspective in India. In: 1st Philippine Pigeonpea Congress, December 16-18, 2014, Mariano Marcos State University, Batac, Ilocos Norte, Philippines. (Submitted)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Zhu, F and Han, J and Liu, S and Chen, X and Varshney, R K and Liang, X (2014) Cloning, Expression Pattern Analysis and Subcellular Localization of Resveratrol Synthase Gene in Peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 5 (24). pp. 3619-3631. ISSN 2158-2750

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Garg, R and Varshney, R K and Jain, M (2014) Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science, 5. ISSN 1664-462X

Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

Mallikarjuna, N and Varshney, R K (2014) Genetics, Genomics and Breeding of Peanuts. Series on Genetics, Genomics and Breeding of Crop Plants . CRC Press, Boca Raton. ISBN 9781482238372

Mallikarjuna, N and Shilpa, K and Pandey, M K and Janila, P and Varshney, R K (2014) Groundnut. In: Broadening the Genetic Base of Grain Legumes. Springer, India, pp. 161-173. ISBN 978-81-322-2022-0

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Ali, L and Madrid, E and Varshney, R K and Azam, S and Millan, T and Rubio, J and Gill, J (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488. ISSN 0040-5752

Mallikarjuna, N and Srikanth, S and Sameer Kumar, C V and Srivastava, R K and Saxena, R K and Varshney, R K (2014) Pigeonpea. In: Broadening the Genetic Base of Grain Legumes. Springer, India, pp. 149-159. ISBN 978-81-322-2022-0

Varshney, R K and Tuberosa, R (2013) Translational Genomics for Crop Breeding: Abiotic Stress, Yield and Quality, Volume 2. John Wiley & Sons, Inc. ISBN 978-0470962916

Varshney, R K (2013) Seeking Sustainable Protein Sources for Asia and Sub-Saharan Africa. Illumina Community Newsletter. pp. 1-2.

Lübberstedt, T and Varshney, R K (2013) Diagnostics in Plant Breeding. Springer, Netherlands. ISBN 978-94-007-5686-1

Varshney, R K and Tuberosa, R (2013) Translational Genomics for Crop Breeding: Biotic Stress, Volume 1. John Wiley & Sons, Inc. ISBN 9780470962909

Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Costa de Oliveira, A and Varshney, R K (2011) Root Genomics. Springer. ISBN 978-3-540-85545-3

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2010) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 121 (05). pp. 971-984. ISSN 1432-2242

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26 (2). pp. 371-380. ISSN 1380-3743

Varshney, R K and Tuberosa, R (2007) Genomics-Assisted Crop Improvement, Vol 1: Genomics Approaches and Platforms. Springer, Netherlands. ISBN 978-1-4020-6294-0

Varshney, R K and Tuberosa, R (2007) Genomics-Assisted Crop Improvement, Vol 2: Genomics Applications in Crops. Springer. ISBN 978-1-4020-6296-4

Varshney, R K and Koebner, R M D (2007) Model Plants and Crop Improvement. CRC Press. ISBN 978‑0‑8493‑3063‑6

Gupta, P K and Varshney, R K (2005) Cereal Genomics. Springer. ISBN 978-90-481-6646-6

ICRISAT (Tanzania)

Bakari, H and Mwalongo, S and Akpo, E and Lukurugu, G A and Nzunda, J and Gekanana, R and Waithira, G and Ojiewo, C O and Varshney, R K (2021) A Business Case for Enhanced Investments in the Groundnut Value Chain in Tanzania. Working Paper. ICRISAT, Hyderabad, India.

Ndossi, J and Kalema, E P and Kimbi, G T and Akpo, E and Kongola, E and Ringo, J and Makoye, L Y and Gekanana, R and Waithira, G and Ojiewo, C O and Varshney, R K (2021) Harnessing Opportunities for Informed Investments in the Sorghum Commodity Value Chain in Tanzania: A Business Case. Working Paper. ICRISAT, Patancheru, ICRISAT.

ICRISAT(Lilongwe)

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

ICRISAT(Nairobi)

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

ICRISAT(Niamey)

Upadhyaya, H D and Dwivedi, S L and Vadez, V and Hamidou, F and Singh, S and Varshney, R K and Liao, B (2014) Multiple Resistant and Nutritionally Dense Germplasm Identified from Mini Core Collection in Peanut. Crop Science, 54 (2). pp. 679-693. ISSN 1435-0653

ICRISAT(Niger)

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

ICRISAT(Patancheru)

Huai, D and Xue, X and Wu, J and Pandey, M K and Liu, N and Huang, L and Yan, L and Chen, Y and Wang, X and Wang, Q and Kang, Y and Wang, Z and Jiang, H and Varshney, R K and Liao, B and Lei, Y (2024) Enhancing peanut nutritional quality by editing AhKCS genes lacking natural variation. Plant Biotechnology Journal. pp. 1-3. ISSN 1467-7644

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811

Pandey, M K and Gangurde, S S and Shasidhar, Y and Sharma, V and Kale, S M and Khan, A W and Shah, P and Joshi, P and Bhat, R S and Janila, P and Bera, S K and Varshney, R K (2024) High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut. BMC Plant Biology (TSI), 24. pp. 1-16. ISSN 1471-2229

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology. ISSN 1432-2056

Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology, 47. pp. 115-133. ISSN 0722-4060

Pamala, P J and Jayalakshmi, R S and Vemana, K and Naidu, G M and Varshney, R K and Sudini, H K (2023) Prevalence of groundnut dry root rot (Macrophomina phaseolina (Tassi) Goid.) and its pathogenic variability in Southern India. Frontiers in Fungal Biology, 4. 01-16. ISSN 2673-6128

Dutta, B and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Delving into the lifestyle of Sundarban Wetland resident, biofilm producing, halotolerant Salinicoccus roseus: a comparative genomics-based intervention. BMC Genomics (TSI), 24. pp. 1-15. ISSN 1471-2164

Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642

Kabiraj, A and Halder, U and Panja, A S and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Detailed genomic and biochemical characterization and plant growth promoting properties of an arsenic-tolerant isolate of Bacillus pacificus from contaminated groundwater of West Bengal, India. Biocatalysis and Agricultural Biotechnology (TSI), 52. ISSN 1878-8181

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372

Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X

Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437

Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372

Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021

Huai, D and Wu, J and Xue, X and Hu, M and Zhi, C and Pandey, M K and Liu, N and Huang, L and Bai, D and Yan, L and Chen, Y and Wang, X and Kang, Y and Wang, Z and Jiang, H and Lei, Y and Varshney, R K and Liao, B (2023) Red fluorescence protein (DsRed2) promotes the screening efficiency in peanut genetic transformation. Frontiers in Plant Science (TSI), 14. 01-11. ISSN 1664-462X

Majhi, K and Let, M and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. Environmental Research (TSI), 223. ISSN 0013-9351

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067

Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109

Liu, N and Wu, B and Pandey, M K and Huang, L and Luo, H and Chen, Y and Zhou, X and Chen, W and Huai, D and Yu, B and Chen, H and Guo, J and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2022) Gene expression and DNA methylation altering lead to the high oil content in wild allotetraploid peanut (A. monticola). Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16. pp. 1-19. ISSN 1940-3372

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genesand diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16 (4). pp. 1-19. ISSN 1940-3372

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Babele, P K and Kudapa, H and Singh, Y and Varshney, R K and Kumar, A (2022) Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

Akinlade, O J and Voss-Fels, K and Costilla, R and Kholova, J and Choudhary, S and Varshney, R K and Hickey, L T and Smith, M R (2022) Designing chickpea for a hotter drier world. Euphytica, 218. pp. 1-16. ISSN 1573-5060

Xiao, Y and Liu, H and Du, P and Liang, X and Li, H and Lu, Q and Li, S and Liu, H and Hong, Y and Varshney, R K and Chen, X (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379. ISSN 0308-8146

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

Kumar, S and Das, A and Hauser, M and Muricho, G and Degefu, T and Fikre, A and Ojiewo, C and Ferede, S and Varshney, R K (2022) Estimating the potential to close yield gaps through increased efficiency of chickpea production in Ethiopia. Food Security, 14. pp. 1241-1258. ISSN 1876-4525

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

Lu, Q and Liu, H and Hong, Y and Liang, X and Li, S and Liu, H and Li, H and Wang, R and Deng, Q and Jiang, H and Varshney, R K and Pandey, M K and Chen, X (2022) Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). Frontiers in Plant Science (TSI), 13. 01-11. ISSN 1664-462X

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Tayade, A T and Motagi, B N and Jadhav, M P and Nadaf, A S and Koti, R V and Gangurde, S S and Sharma, V and Varshney, R K and Pandey, M K and Bhat, R S (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218. pp. 1-10. ISSN 1573-5060

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

Muniswamy, S and Kumar, P and Saxena, R K and Geeta, - and Varshney, R K (2022) Stability of advanced medium duration genotypes across seasons for yield in pigeonpea [Cajanus cajan (L.) millsp.]. Indian Journal of Agricultural Research, 56 (2). pp. 129-134. ISSN 0976-058X

Kulwal, P L and Mir, R R and Varshney, R K (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal, 20. pp. 1021-1030. ISSN 1467-7652

Xiao, Y and Liu, H and Lu, Q and Li, H and Liu, Q and Li, S and Liu, H and Varshney, R K and Liang, X and Hong, Y and Chen, X (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155. ISSN 0963-9969

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Doležalová, A and Sládeková, L and Šimoníková, D and Holušová, K and Karafiátová, M and Varshney, R K and Doležel, J and Hřibová, E (2022) Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting Fluorescence in situ Hybridization. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Garg, V and Varshney, R K (2022) Analysis of Small RNA Sequencing Data in Plants. In: Plant Bioinformatics Methods in Molecular Biology. Methods in Molecular Biology, III (2443). Humana, New York, pp. 497-509. ISBN 978-1-0716-2067-0

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Varshney, R K (2021) The Plant Genome special issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement. The Plant Genome (TSI), 14 (3). pp. 1-4. ISSN 1940-3372

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

Saxena, K B and Saxena, R K and Varshney, R K (2021) Genetic Enhancement in Major Food Legumes: An Overview. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 1-6. ISBN 978-3-030-64500-7

Bohra, A and Jha, U C and Naik, S J S and Mehta, S and Tiwari, A and Maurya, A K and Singh, D and Yadav, V and Patil, P G and Saxena, R K and Varshney, R K (2021) Genomics: Shaping Legume Improvement. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 49-89. ISBN 978-3-030-64500-7

Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322

Hong, Y and Pandey, M K and Lu, Q and Liu, H and Gangurde, S S and Li, S and Liu, H and Li, H and Liang, X and Varshney, R K and Chen, X (2021) Genetic diversity and distinctness based on morphological and SSR markers in peanut. Agronomy Journal (TSI), 113 (6). pp. 4648-4660. ISSN 0002-1962

Jadhav, M P and Patil, M D and Hampannavar, M and Venkatesh, - and Dattatreya, P and Shirasawa, K and Janila, P and Pandey, M K and Varshney, R K and Bhat, R S (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker-assisted backcross breeding. Crop Science (TSI), 61 (4). pp. 2435-2443. ISSN 0011-183X

Roorkiwal, M and Jarquin, D and Jain, A and Garg, V and Kale, S M and Singh, M K and Samineni, S and Gaur, P M and Rathore, A and Chellapilla, B and Tripathi, S and Crossa, J and Varshney, R K (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372

Jaganathan, D (2016) Fine mapping of the “QTL-hotspot” region for drought tolerance in Chickpea (Cicer arietinum L.). PHD thesis, Osmania University,Hyderabad.

Dillon, N and Kuhn, D and Innes, D and Bally, I and Varshney, R K (2015) Mango Genomics. In: Tropical Agriculture Conference 2015: Meeting the Productivity Challenge in the Tropics, November 16 - 18, 2015, Brisbane Convention & Exhibition Centre, Australia.

Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028

Gopalakrishnan, S and Sathya, A and Vijayabharathi, R and Varshney, R K and Gowda, C L L and Krishnamurthy, L (2015) Plant growth promoting rhizobia: challenges and opportunities. 3 Biotech, 5 (4). pp. 355-377. ISSN 2190-5738

Faye, I and Pandey, M K and Hamidou, F and Rathore, A and Ndoye, O and Vadez, V and Varshney, R K (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647. ISSN 1573-5060

Sinha, P and Singh, V K and Suryanarayana, V and Krishnamurthy, L and Saxena, R K and Varshney, R K (2015) Evaluation and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) Under Drought Stress Conditions. PLOS One, 10 (4). pp. 1-15. ISSN 1932-6203

Roorkiwal, M and Thudi, M and Gaur, P M and Upadhyaya, H D and Singh, N P and Varshney, R K (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives (7). pp. 7-9. ISSN 2340-1559

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Rathore, A and Varshney, R K (2015) The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. SpringerPlus, 4 (31). pp. 1-10. ISSN 2193-1801

Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541

Gaur, P M and Thudi, M and Samineni, S and Varshney, R K (2014) Advances in Chickpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 73-94. ISBN 978-1-4614-8370-0

Bohra, A and Saxena, R K and Saxena, K B and Sameer Kumar, C V and Varshney, R K (2014) Advances in Pigeonpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 95-110. ISBN 978-1-4614-8370-0

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752

Doddamani, D and Katta, M A V S K and Khan, A W and Agarwal, G and Shah, T M and Varshney, R K (2014) CicArMiSatDB: the chickpea microsatellite database. BMC Bioinformatics, 15 (212). pp. 1-7. ISSN 1471-2105

Zhu, W and Chen, X and Li, H and Zhu, F and Hong, Y and Varshney, R K and Liang, X (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409. ISSN 1573-5028

Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203

Sharma, M and Nagavardhini, A and Thudi, M and Ghosh, R and Pande, S and Varshney, R K (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (454). pp. 1-14. ISSN 1471-2164

Gaur, P M and Samineni, S and Varshney, R K (2014) Drought and heat tolerance in chickpea. Legume Perspetives (3). pp. 15-17. ISSN 2340-1559

Upadhyaya, H D and Dwivedi, S L and Sharma, S and Lalitha, N and Singh, S and Varshney, R K and Gowda, C L L (2014) Enhancement of the use and impact of germplasm in crop improvement. Plant Genetic Resources: Characterization and Utilization, 12 (S1). S155-S159. ISSN 1479-2621

Gopalakrishnan, S and Srinivas, V and Prakash, B and Arumugam, S and Vijayabharathi, R and Rupela, O and Kudapa, H and Krishnamohan, K and Varshney, R K (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169. pp. 40-48. ISSN 0944-5013

Roorkiwal, M and von Wettberg, E J and Upadhyaya, H D and Warschefsky, E and Rathore, A and Varshney, R K (2014) Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers. PLoS ONE, 9 (7). pp. 1-10. ISSN 1932-6203

Saxena, R K and von Wettberg, E and Upadhyaya, H D and Sanchez, V and Songok, S and Saxena, K B and Kimurto, P.K. and Varshney, R K (2014) Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). pp. 1-9. ISSN 1932-6203

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Mallikarjuna, N and Varshney, R K (2014) Genetics, Genomics and Breeding of Peanut: An Introduction. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 1-12. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2

Wang, L and Yu, S and Tong, C and Zhao, Y and Liu, Y and Song, C and Zhang, Y and Zhang, X and Wang, Y and Hua, W and Li, D and Li, F and Yu, J and Xu, C and Han, X and Huang, S and Tai, S and Wang, J and Xu, X and Li, Y and Liu, S and Varshney, R K and Wang, J and Zhang, X (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (R39). pp. 1-13. ISSN 1465-6906

Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X

Millan, T and Madrid, E and Varshney, R K (2014) Genomic resources in chickpea. Legume Perspectives (3). pp. 12-14. ISSN 2340-1559

Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

Bohra, A and Pandey, M K and Jha, U C and Singh, B and Singh, I P and Datta, D and Chaturvedi, S K and Nadarajan, N and Varshney, R K (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. pp. 1-29. ISSN 1432-2242

Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173

Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X

Azam, S and Rathore, A and Shah, T and Mohan, T and Amindala, BP and Ruperao, P and Katta, M A V S K and Varshney, R K (2014) An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data. PLoS ONE, 9 (7). pp. 1-11. ISSN 1932-6203

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372

Varshney, R K and Pandey, M K and Janila, P and Nigam, S N and Sudini, H and Gowda, M V C and Sriswathi, M and Radhakrishnan, T and Manohar, S S and Nagesh, P (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781. ISSN 0040-5752

Pandey, M K and Guo, B and Holbrook, C C and Janila, P and Zhang, X and Bertioli, D J and Isobe, S and Liang, S and Varshney, R K (2014) Molecular Markers, Genetic Maps, and QTLs for Molecular Breeding in Peanut. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 79-113. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2

Upadhyaya, H D and Dwivedi, S L and Vadez, V and Hamidou, F and Singh, S and Varshney, R K and Liao, B (2014) Multiple Resistant and Nutritionally Dense Germplasm Identified from Mini Core Collection in Peanut. Crop Science, 54 (2). pp. 679-693. ISSN 1435-0653

Kim, D H and Kaashyap, M and Rathore, A and Das, R A and Parupalli, S and Upadhyaya, H D and Gopalakrishnan, S and Gaur, P M and Singh, S and Kaur, J and Yasin, M and Varshney, R K (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 1-5. ISSN 0250-5991

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Varshney, R K and Parzies, H K (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435. ISSN 1573-5060

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

Ruperao, P and Chan, C-K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrana, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal. ISSN 1467-7652

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Gupta, P K and Varshney, R K (2013) Cereal Genomics II. Springer Netherlands. ISBN 978-94-007-6401-9

Gupta, P K and Varshney, R K (2013) Cereal Genomics: Excitements, challenges and opportunities. In: Cereal Genomics II. Springer, Netherlands, pp. 1-9. ISBN 978-94-007-6400-2

Sharma, S and Upadhyaya, H D and Roorkiwal, M and Varshney, R K and Gowda, C L L (2013) Chickpea. In: Genetic and Genomic Resources of Grain Legume Improvement. Elsevier, London, UK, pp. 81-111. ISBN 978-0-12-397935-3

Kim, D H and Parupalli, S and Azam, S and Lee, S H and Varshney, R K (2013) Comparative sequence analysis of nitrogen fixation-related genes in six legumes. Frontiers in Plant Science, 4 (300). pp. 1-8.

Kulwal, P L and Thudi, M and Varshney, R K (2013) Crop breeding for sustainable agriculture, genomics interventions in. In: Sustainable Food Production. Springer, New York, pp. 501-513. ISBN 978-1-4614-5796-1

Tuteja, R and Saxena, R K and Davila, J and Shah, T and Chen, W and Xiao, Y-L and Fan, G and Saxena, K B and Alverson, A J and Spillane, C and Town, C and Varshney, R K (2013) Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes. DNA Research, 20 (5). pp. 485-495. ISSN 1756-1663

Chen, X and Zhu, W and Azam, S and Li, H and Zhu, F and Li, H and Hong, Y and Liu, H and Zhang, E and Wu, H and Yu, S and Zhou, G and Li, S and Zhong, N and Wen, S and Li, X and Knapp, S J and Ozias-Akins, P and Varshney, R K and Liang, X (2013) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.

Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Mir, R R and Hiremath, P J and Riera-Lizarazu, O and Varshney, R K (2013) Evolving Molecular Marker Technologies in Plants: From RFLPs to GBS. In: Diagnostics in Plant Breeding. Springer Science+Business, New York, pp. 229-247. ISBN 978-94-007-5686-1 ;978-94-007-5687-8 (eBook)

Gowda, C L L and Upadhyaya, H D and Sharma, S and Varshney, R K and Dwivedi, S L (2013) Exploiting genomic resources for efficient conservation and utilization of chickpea, groundnut, and pigeonpea collections for crop improvement. The Plant Genome, 6 (3). pp. 1-28. ISSN 1940-3372

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Janila, P and Nigam, S N and Pandey, M K and Nagesh, P and Varshney, R K (2013) Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Genetics and Genomic, 4 (23). pp. 1-16.

Saxena, K B and Kumar, R V and Tikle, A N and Saxena, M K and Gautam, V S and Rao, S K and Khare, D K and Chauhan, Y S and Saxena, R K and Reddy, B V S and Sharma, D and Reddy, L J and Green, J M and Faris, D G and Mula, M G and Sultana, R and Srivastava, R K and Gowda, C L L and Sawargaonkar, S L and Varshney, R K (2013) ICPH 2671 – the world’s first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485. ISSN 1439-0523 (In Press)

Liu, Z and Feng, S and Pandey, M K and Chen, X and Culbreath, A K and Varshney, R K and Guo, B (2013) Identification of expressed resistance gene analogs from peanut (Arachis hypogaea L.) expressed sequence tags. Journal of Integrative Plant Biology, 55 (5). pp. 453-461. ISSN 1744-7909 (In Press)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Varshney, R K and Roorkiwal, M and Nguyen, T (2013) Legume Genomics: From Genomic Resources to Molecular Breeding. The Plant Genome, 6 (3). pp. 1-7. ISSN 1940-3372

Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408

Burow, M D and Leal-Bertioli, S C M and Simpson, C E and Ozias-Akins, P and Chu, Y and Denwar, N N and Chagoya, J and Starr, J L and Moretzsohn, M C and Pandey, M K and Varshney, R K and Holbrook, C C and Bertioli, D J (2013) Marker-Assisted Selection for Biotic Stress Resistance in Peanut. In: Translational Genomics for Crop Breeding: Biotic Stress. Wiley Blackwell, pp. 125-150. ISBN 978-0-470-96290-9

Upadhyaya, H D and Dronavalli, N and Dwivedi, S L and Kashiwagi, J and Krishnamurthy, L and Pande, S and Sharma, H C and Vadez, V and Singh, S and Varshney, R K and Gowda, C L L (2013) Mini Core Collection as a Resource to Identify New Sources of Variation. Crop Science, 53 (6). pp. 2506-2517. ISSN 1435-0653

Mudaraddi, B and Saxena, K B and Saxena, R K and Varshney, R K (2013) Molecular diversity among wild relatives of Cajanus cajan (L.) Millsp. African Journal of Biotechnology, 12 (24). pp. 3797-3801. ISSN 1684-5315

Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060

Krishnamurthy, L and Kashiwagi, J and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Singh, Sube and Purushothaman, R and Varshney, R K (2013) Partitioning coefficient—A trait that contributes to drought tolerance in chickpea. Field Crops Research, 149. pp. 354-365. ISSN 0378-4290

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

Rajaram, V and Nepolean, T and Senthilvel, S and Varshney, R K and Vadez, V and Srivastava, R K and Shah, T M and Supriya, A and Kumar, S and Kumari, B R and Bhanuprakash, A and Narasu, M L and Riera-Lizarazu, O and Hash, C T (2013) Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs. BMC Genomics, 14 (159). pp. 1-15.

Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806

Upadhyaya, H D and Sharma, S and Reddy, K N and Saxena, R K and Varshney, R K and Gowda, C L L (2013) Pigeonpea. In: Genetic and Genomic Resources of Grain Legume Improvement. Elsevier, London, Uk, pp. 181-202. ISBN 978-0-12-397935-3

Sharma, S and Upadhyaya, H D and Varshney, R K and Gowda, C L L (2013) Pre-breeding for diversification of primary gene pool and genetic enhancement of grain legumes. Frontiers in Plant Science, 4 (309). pp. 1-14. ISSN 1664-462X

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Roorkiwal, M and Sawargaonkar, S L and Chitikineni, A and Thudi, M and Saxena, R K and Upadhyaya, H D and Vales, M I and Riera-Lizarazu, O and Varshney, R K (2013) Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform. The Plant Genome, 6 (2). pp. 1-10. ISSN 1940-3372

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Khera, P and Upadhyaya, H D and Pandey, M K and Roorkiwal, M and Sriswathi, M and Janila, P and Guo, Y and McKain, M R and Nagy, E D and Knapp, S J and Leebens-Mack, J and Conner, J A and Ozias-Akins, P and Varshney, R K (2013) Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays. The Plant Genome, 6 (3). pp. 1-11. ISSN 1940-3372

Kashiwagi, J and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Varshney, R K and Tobita, S (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 (1). pp. 88-95. ISSN 0378-4290

Varshney, R K and Tuberosa, R (2013) Translational Genomics in Crop Breeding for Biotic Stress Resistance: An Introduction. In: Translational Genomics for Crop Breeding: Biotic Stress. Wiley Blackwell, pp. 1-9. ISBN 978-0-470-96290-9

Krishnamurthy, L and Kashiwagi, J and Tobita, S and Ito, O and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Sheshshayee, M S and Singh, Sube and Vadez, V and Varshney, R K (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 14 (12). pp. 1350-1361. ISSN 1445-4408

Mir, R R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Kilian, A and Cook, D R and Varshney, R K (2013) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding, 132 (5). pp. 472-478. ISSN 1439-0523

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Parzies, H K and Bharathi, A and Varshney, R K and Gowda, C L L (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223. ISSN 1479-2621

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Varshney, R K and Ribaut, J M and Buckler, E S and et al, . (2012) Can genomics boost productivity of orphan crops? Nature Biotechnology, 30. pp. 1172-1176. ISSN 1087-0156

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Azam, S and Thakur, V and Ruperao, P. and Shah, T and Balaji, J and Amindala, B. and Farmer, A D and Studholme, D.J. and May, G D and Edwards, D. and Jones, J.D.G. and Varshney, R K (2012) Coverage-Based Consensus Calling (CBCC) Of Short Sequence Reads And Comparison Of CBCC Results To Identify SNPs In Chickpea ( Cicer Arietinum ; Fabaceae), A Crop Species Without A Reference Genome 1. American Journal of Botany, 99 (2). pp. 186-192. ISSN 1537-2197

Kudapa, H and Sharma, H C and Krishnamurthy, L and Adivi, S and Vijaya, P and Farmer, A D and Shah, T and Gaur, P M and Varshney, R K (2012) Deciphering the role of stress responsive genes in chickpea (Cicer arietinum L.). In: Proceedings of VI International Conference on Legumes Genetics and Genomics, 2-7 October 2012, Hyderabad, India.

Gujaria, Neha (2012) Development Of Functional Markers And Transcript Map Of Chickpea (Cicer arietinum L). PHD thesis, Dr. Hari Singh Gour University Sagar(Madhya Pradesh).

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

Wang, H and Penmetsa, R V and Yuan, M and Varshney, R K and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-3. ISSN 1471-2229

Mallikarjuna, N and Saxena, K B and Lakshmi, J and Varshney, R K and Srikanth, S and Jadhav, D R (2012) Differences between Cajanus cajan (L.) Millspaugh and C. cajanifolius (Haines) van der Maesen, the progenitor species of pigeonpea. Genetic Resources and Crop Evolution, 59 (3). pp. 411-417. ISSN 1573-5109

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Saxena, K B and Saxena, R K and Kumar, R V and Varshney, R K (2012) Evidence of a unique inter-allelic epistatic interaction for seed coat color in pigeonpea [Cajanus cajan (L.) Millspaugh]. Euphytica, 186 (3). pp. 813-816. ISSN 1573-5060

Mir, R R and Varshney, R K (2012) Future Prospects of Molecular Markers in Plants. In: Molecular Markers in Plants. Blackwell Publishing Ltd, Oxford, UK. , pp. 169-190. ISBN 9781118473023

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

Saxena, K B and Kumar, R V and Saxena, R K and Sharma, M and Srivastava, R K and Sultana, R and Varshney, R K and Vales, M I and Pande, S (2012) Identification of dominant and recessive genes for resistance to Fusarium wilt in pigeonpea and their implication in breeding hybrids. Euphytica, 188 (2). pp. 221-227. ISSN 1573-5060

Gaur, P M and Jukanti, A.K. and Varshney, R K (2012) Impact of Genomic Technologies on Chickpea Breeding Strategies. Agronomy, 2. pp. 199-221. ISSN 2073-4395

Mir, R R and Zaman-Allah, M and Sreenivasulu, N and Trethowan, R and Varshney, R K (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. TAG Theoretical and Applied Genetics, 125 (4). pp. 625-645. ISSN 1432-2242

Gautami, B and Fonce´ka, D and Pandey, M K and Sujay, V and Bhanuprakash, A and Shah, T and Nigam, S N and Hoisington, D A and Varshney, R K and et al, . (2012) An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.). Plos ONE-Biotechnology, 7 (7). pp. 1-11.

Saxena, R K and Penmetsa, R V and Upadhyaya, H D and Kumar, Ashish and Varshney, R K and et al, . (2012) Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes. DNA Research. pp. 1-13. ISSN 1756-1663

Hiremath, P J and Kumar, A and Penmetsa, R V and et al, . (2012) Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal, 10 (6). pp. 716-732. ISSN 1467-7652

Sharma, M and Ghosh, R and Krishnan, R R and Nagamangala, U N and Chamarthi, S K and Varshney, R K and Pande, S (2012) Molecular and morphological diversity in Rhizoctonia bataticola isolates causing dry root rot of chickpea (Cicer arietinum L.) in India. African Journal of Biotechnology, 11 (37). pp. 8949-8959. ISSN 1684–5315

Varshney, R K and May, G D (2012) Next-generation sequencing technologies: opportunities and obligations in plant genomics. Briefings in Functional Genomics, 11 (1). pp. 1-2. ISSN 2041-2647

Fakrudin, B and Tuberosa, R and Varshney, R K (2012) Omics techniques in crop research: an overview. In: Improving Crop Resistance to Abiotic Stress. Wiley-VCH Verlag GmbH & Co. KGaA, pp. 289-300. ISBN 978-3-527-32840-6

Vales, M I and Saxena, K B and Saxena, R K and Patil, S B and Sawargaonkar, S L and Sultana, R and Sharma, M and Pande, S and Varshney, R K (2012) PRIL_A, PRIL_B and PRIL_C: Pigeonpea Recombinant Inbred Line Mapping Populations Segregating for Resistance to Fusarium Wilt and Sterility Mosaic Disease. Documentation. International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and et al, . (2012) Phenotyping chickpeas and pigeonpeas for adaptation to drought. Frontiers in Plant Physiology, 3 (179). pp. 1-10.

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

Sujay, V and Gowda, M V C and Pandey, M K and Bhat, R S and Khedikar, Y P and Nadaf, H L and Gautami, B and Sarvamangala, C and Lingaraju, S and Radhakrishan, T and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788. ISSN 1572-9788

Mir, R R and Thudi, M and Chamarthi, S K and Krishnamurthy, L and Gaur, P M and Varshney, R K (2012) Translational Root Genomics for Crop Improvement. In: Root Genomics and Soil Interactions. John Wiley & Sons, Inc., USA, pp. 249-264. ISBN 9781118447093

Gangola, M and Khedikar, Y and Gaur, P M and Baga, M and Varshney, R K and Chibbar, R (2012) Variation in important seed constituents among various chickpea genotypes. Quality Assurance and Safety of Crops & Foods, 4 (3). pp. 136-158. ISSN 1757-837X

Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242

Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Varshney, R K (2011) Application of Next Generation Sequencing and Genotyping Technologies to Develop Large‐Scale Genomic Resources in SAT Legume Crops. In: National Symposium on Genomics and Crop Improvement: Relevance and Reservations , February 25 - 27, 2010, Acharya N G Ranga Agricultural University, Rajendranagar, Hyd.

Sefera, T and Abebie, B and Gaur, P M and Assefa, K and Varshney, R K (2011) Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62 (2). pp. 177-187. ISSN 1836-5795

Gowda, M V C and Bhat, R S and Sujay, V and Kusuma, P and Kumari, Varsha and Varshney, R K and Bhat, S (2011) Characterization of AhMITE1 transposition and its association with the mutational and evolutionary origin of botanical types in peanut (Arachis spp.). Plant Systematics and Evolution, 291 (3-4). pp. 153-158.

Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).

Krishnamurthy, L and Turner, N C and Gaur, P M and Upadhyaya, H D and Varshney, R K and Siddique, K H M and Vadez, V (2011) Consistent Variation across Soil Types in Salinity Resistance of a Diverse Range of Chickpea (Cicer arietinum L.) Genotypes. Journal Of Agronomy And Crop Science, 197 (3). pp. 214-227.

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Dubey, A (2011) Development of genomic resources in pigeonpea (Cajanus cajan L.Millspaugh). PHD thesis, Barkatullah University.

Jalaja, N (2011) Development of transgenics for fungal resistance and discovery of chemically induced mutations in Pearl Millet (Pennisetum glaucum L.) population by TILLING. PHD thesis, Osmania University.

Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.

Saxena, K B and Sultana, R and Saxena, R K and Kumar, R V and Sandhu, J S and Rathore, A and Kavi Kishor, P B and Varshney, R K (2011) Genetics of Fertility Restoration in A4-Based, Diverse Maturing Hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51. pp. 574-578. ISSN 0011-183X

Neumann, K and Kobiljski, B and Dencic, S and Varshney, R K and Borner, A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Molecular Breeding, 27. pp. 37-58. ISSN 1572-9788

Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.

Kulwal, P and Thudi, M and Varshney, R K (2011) Genomics Interventions in Crop Breeding for Sustainable Agriculture. In: Encyclopedia of Sustainability Science and Technology. Springer. ISBN 978-0-387-89469-0 (In Press)

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D A (2011) Genomics and Physiological Approaches for Root Trait Breeding to Improve Drought Tolerance in Chickpea (Cicer arietinum L.). In: Root Genomics. Springer, Germany, pp. 233-250. ISBN 9783540855453

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D (2011) Genomics and physiological approaches for root trait breeding to improve drought tolerance in chickpea (Cicer arietinum L.). In: Root Genomics. Springer Berlin, Heidelberg, pp. 233-250. ISBN 978-3-540-85545-3

Tuberosa, R and Graner, A and Varshney, R K (2011) Genomics of plant genetic resources: an introduction. Plant Genetic Resources, 9 (2). pp. 151-154. ISSN 1479-2621

Sharma, R and Thakur, R P and Senthilvel, S and Nayak, S N and Veera Reddy, S and Rao, V P and Varshney, R K (2011) Identification and Characterization of Toxigenic Fusaria Associated with Sorghum Grain Mold Complex in India. Mycopathologia, 171. pp. 223-230.

Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Burstin, J and Gallardo, K and Mir, R R and Varshney, R K and Duc, G (2011) Improving protein content and nutrition quality. In: Biology and Breeding of Food Legumes. CAB International, Wallingford, UK, pp. 314-328. ISBN 9781845937669

Costa de Oliveira, A and Varshney, R K (2011) Introduction to root genomics. In: Root Genomics. Springer Berlin Heidelberg, New York, pp. 1-10. ISBN 978-3-540-85545-3

Krishnamurthy, L and Gaur, P M and Basu, P S and Chaturvedi, S K and Tripathi, S and Vadez, V and Rathore, A and Varshney, R K and Gowda, C L L (2011) Large genetic variation for heat tolerance in the reference collection of chickpea (Cicer arietinum L.) germplasm. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 59-69.

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Anuradha, C and Gaur, P M and Pande, S and Gali, K K and Ganesh, M and Kumar, J and Varshney, R K (2011) Mapping QTL for resistance to botrytis grey mould in chickpea. Euphytica, 182 (1). pp. 1-9. ISSN 0014-2336

Oyier, M.O and Mulwa, R.M.S and Kimurto, P.K. and Towett, B.K. and Cheruiyot, E.K. and Rao, N.V.P.R.G and Silim, S.N. and Varshney, R K and Gaur, P M (2011) Marker assisted backcross breeding to enhance drought tolerance in Kenyan chickpea (Cicer arietinum L.) germplasm. In: 6th Egerton University International Conference: Research and Expo-Transformative Research for Sustainable Development, 21-23 September, 2011, Kenya.

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Upadhyaya, H D and Reddy, K N and Sharma, S and Varshney, R K and Bhattacharjee, R and Singh, Sube and Gowda, C L L (2011) Pigeonpea composite collection and identification of germplasm for use in crop improvement programmes. Plant Genetic Resources, 9 (1). pp. 97-108. ISSN 1479-2621

Mallikarjuna, N and Senapathy, S and Jadhav, D R and Saxena, K B and Sharma, H C and Upadhyaya, H D and Rathore, A and Varshney, R K (2011) Progress in the utilization of Cajanus platycarpus Benth.) Maesen in pigeonpea improvement. Plant Breeding, 130 (5). pp. 507-514.

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.

Saxena, R K and Cui, X and Thakur, V and Walter, B and Close, T J and Varshney, R K (2011) Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.). Functional & Integrative Genomics, 11 (4). pp. 651-657.

Bhardwaj, R and Sandhu, J S and Varshney, R K and Gaur, P M and Kaur, L and Vikal, Y (2011) Synteny relationships among the linkage groups of chickpea (Cicer arietinum L.). Journal of Food Legumes, 24 (2). pp. 91-95.

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Chamarthi, S K and Kumar, A and Vuong, T D and Blair, M W and Gaur, P M and Nguyen, H T and Varshney, R K (2011) Trait mapping and molecular breeding. In: Biology and breeding of food legumes. CAB International, Wallingford, UK, pp. 296-313. ISBN 978-1-84593-766-9

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266

Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26. pp. 371-380. ISSN 1572-9788

Thakur, V and Varshney, R K (2010) Challenges and Strategies for Next Generation Sequencing (NGS) Data Analysis. Journal of Computer Science & Systems Biology, 3. pp. 40-42.

Sharma, R and Rao, V P and Varshney, R K and Prasanth, V P and Kannan, S and Thakur, R P (2010) Characterisation of pathogenic and molecular diversity in Sclerospora graminicola, the causal agent of pearl millet downy mildew. Archives of Phytopathology and Plant Protection, 43 (6). pp. 538-551. ISSN 0323-5408

Witzel, K and Weidner, A and Surabhi, G K and Varshney, R K and Kunze, G and Buck-Sorlin, G H and Borner, A and Mock, H P (2010) Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination. Plant, Cell and Environment, 33 (2). pp. 211-222.

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Salem, K F M and Varshney, R K and Roder, M S and Borner, A (2010) EST-SSR based estimates on functional genetic variation in a barley (Hordeum vulgare L.) collection from Egypt. Genetic Resources and Crop Evolution, 57. pp. 515-525.

Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.

Cook, D R and Varshney, R K (2010) From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology, 13 (2). pp. 115-118.

Gnanesh, B N (2010) Generation of Expressed Sequence Tags and Marker Development for Sterility Mosaic Disease Resistance in Pigeonpea. PHD thesis, University of Agricultural Sciences, Bangalore.

Ravi, K and Upadhyaya, H D and Dwivedi, S L and Hoisington, D A and Varshney, R K (2010) Genetic relationships among seven sections of genus Arachis studied by using SSR markers. BMC Plant Biology, 10 (15). pp. 1-12.

Bhardwaj, R and Sandhu, J S and Kaur, L and Gupta, S K and Gaur, P M and Varshney, R K (2010) Genetics of ascochyta blight resistance in chickpea. Euphytica, 171 (3). pp. 337-343. ISSN 1573-5060

Bohra, A and Mallikarjuna, N and Saxena, K B and Upadhyaya, H D and Vales, I and Varshney, R K (2010) Harnessing the Potential of Crop Wild Relatives through Genomics Tools for Pigeonpea Improvement. Journal of Plant Biology, 37 (1). pp. 83-98.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Saxena, K B and Sultana, R and Mallikarjuna, N and Saxena, R K and Kumar, R V and Sawargaonkar, S L and Varshney, R K (2010) Male-sterility systems in pigeonpea and their role in enhancing yield. Plant Breeding, 129 (2). pp. 125-134.

Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799

Saxena, R K and Prathima, C and Saxena, K B and Hoisington, D A and Singh, N K and Varshney, R K (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.). Plant Breeding, 129 (2). pp. 142-148.

Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and Chaturvedi, S K and Basu, P S and Singh, I P (2010) Phenotyping chickpeas and pigeonpeas for adaptation to drought. In: Drought phenotyping in crops: from theory to practice. Generation Challenge Programme, pp. 347-355.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.

Flowers, T J and Gaur, P M and Gowda, C L L and Krishnamurthy, L and Samineni, S and Siddique, K H M and Turner, N C and Vadez, V and Varshney, R K and Colmer, T D (2010) Salt sensitivity in chickpea. Plant, Cell and Environment , 33 (4). pp. 490-509. ISSN 0140-7791

Saxena, R K and Saxena, K B and Kumar, R V and Hoisington, D A and Varshney, R K (2010) Simple sequence repeat-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance to Fusarium wilt and sterility mosaic disease. Plant Breeding, 129. pp. 135-141. ISSN 0179-9541

Saxena, R K (2010) Study of inheritance and identification of molecular markers for fertility restorers in pigeonpea [Cajanus cajan (L.) Millspaugh]. PHD thesis, International Crops Research Institute for the Semi-Arid Tropics .

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).

Raju, N K and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P J and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discoveryand marker development in pigeonpea(Cajanus cajan L.). BMC Plant Biology, 10. pp. 45-66. ISSN 14712229

Tatikonda, L and Wani, S P and Kannan, S and Beerelli, N and Sreedevi, T K and Hoisington, D A and Devi, P and Varshney, R K (2009) AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant. Plant Science, 176 (4). pp. 505-513.

Varshney, R K and Pande, S and Kannan, S and Thudi, M and Sharma, M and Gaur, P M and Hoisington, D A (2009) Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). Mycological Progress. pp. 1-11.

Sarvamangala, C (2009) Construction of Genetic Linkagemap and QTL Analysis for Foliar Disease Resistance, Nutritional Quality and Productivity Traits in Groundnut (Arachis hypogaea L). PHD thesis, University of Agricultural Sciences, Dharwad.

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Upadhyaya, H D and Dwivedi, S L and Varshney, R K and Gowda, C L L and Bhattacharjee, R and Hoisington, D A and Vadez, V (2009) Enhancing the value of legume genetic resources using core/mini core and applied genomic tools. In: International conference on Current trends in Biotechnology, 19-21 Feb. 2009, Meerut, India.

Varshney, R K (2009) Gene-based marker systems in plants: High throughput approaches for marker discovery and genotyping. In: Molecular Techniques in Crop Improvement. Springer, Netherlands, pp. 119-142. ISBN 978-90-481-2966-9

Sharma, M and Varshney, R K and Rao, J N and Kannan, S and Hoisington, D A and Pande, S (2009) Genetic diversity in Indian isolates of Fusarium oxysporum f. sp. ciceris, chickpea wilt pathogen. African Journal of Biotechnology, 8 (6). pp. 1016-1023.

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2009) High level of natural variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding, 128 (5). pp. 486-494.

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Varshney, R K and Hoisington, D A and Nayak, S N and Graner, A (2009) Molecular Plant Breeding: Methodology and Achievements. In: Plant Genomics: Methods and Protocols. Methods in Molecular Biology (V 513). Humana Press, a part of Springer Science + Business Media, LLC, New York, pp. 283-304. ISBN 978-1-58829-997-0 (Print) ; 978-1-59745-427-8 (Online)

Gulati, P and Varshney, R K and Virdi, J S (2009) Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A. Journal Of Applied Microbiology, 107 (3). pp. 875-884.

Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.

Varshney, R K and Dubey, A (2009) Novel genomic tools and modern genetic and breeding approaches for crop improvement. Journal of Plant Biochemistry and Biotechnology, 18 (2). pp. 127-138.

Gautami, B and Ravi, K and Narasu, M L and Hoisington, D A and Varshney, R K (2009) Novel set of groundnut SSR markers for germplasm analysis and interspecific transferability. International Journal of Integrative Biology, 7 (2). pp. 100-106.

Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266

Jayashree, B and Prakash, A B and Jami, A and Reddy, P S and Nayak, S N and Varshney, R K (2009) Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes, 2. pp. 1-5.

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Upadhyaya, H D and Dwivedi, S L and Baum, M and Varshney, R K and Udupa, S M and Gowda, C L L and Prasanth, V P and Furman, B J and Hoisington, D A and Chndra, S and Singh, Sube (2008) Allelic Richness and Diversity in Global Composite Collection and Reference Sets in Chickpea (Cicer Arietinum L.). In: 5th International Crop Science Congress & Exhibition, Jeju, Korea, 13-18 April 2008.

Singh, R and Sharma, P and Varshney, R K and Sharma, S K and Singh, N K (2008) Chickpea Improvement: Role of Wild Species and Genetic Markers. Biotechnology & Genetic Engineering Reviews, 25. pp. 267-314.

Khedikar, Y P and Patgar, K V and Gowda, M C V and Upadhyaya, H D and Varshney, R K (2008) Construction of a genetic linkage map and QTL analysis for late leaf spot and rust in groundnut (Arachis hypogaea L.). In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2008) Extraordinary high allelic diversity in a groundnut (Arachis hypogaea L.) germplasm collection assayed by robust and informative SSR markers. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Chabane, K and Varshney, R K and Graner, A and Valkoun, J (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881. ISSN 1573-5109

Gowda, M V C and Khedikar, Y P and Kusuma, V P and Sujay, V and Bhat, S and Upadhyaya, H D and Varshney, R K (2008) Genetic enhancement of resistance to foliar diseases. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Upadhyaya, H D and Dwivedi, S L and Baum, M and Varshney, R K and Udupa, S M and Gowda, C L L and Hoisington, D A and Singh, Sube (2008) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology, 8 (106). pp. 1-12.

Varshney, R K and Thiel, T and Sretenovic-Rajicic, T and Baum, M and Valkoun, J and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Molecular Breeding, 22 (1). pp. 1-13. ISSN 1380-3743

Mace, E S and Varshney, R K and Mahalakshmi, V and Seetha, K and Gafoor, A and Leeladevi, Y and Crouch, J H (2008) In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science, 174 (1). pp. 51-60. ISSN 0168-9452

Cuc, L M and Mace, E S and Crouch, J H and Quang, V D and Long, T D and Varshney, R K (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (55). pp. 1-11.

Varshney, R K and Coyne, C J and Swamy, P and Hoisington, D A (2008) Molecular identification of genetically distinct accessions in the USDA chickpea core collection. Pisum Genetics, 39. pp. 32-33. ISSN 1320-2510

Khedikar, Y P (2008) Molecular tagging and mapping of resistance to late leaf spot and rust in groundnut (Arachis hypogaea L.). PHD thesis, University of Agricultural Sciences.

Vadez, V and Krishnamurthy, L and Ratnakumar, P and Rao, S and Devi, J M and Srivastava, N and Sharma, K K and Bhatnagar-Mathur, P and Varshney, R K and Upadhyaya, H D and Aruna, R and Nigam, S N (2008) Phenotypic assessment of groundnut response to key abiotic stress. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Upadhyaya, H D and Lalitha, N and Varshney, R K and Sharma, H C and Kashiwagi, J and Gowda, C L L and Dwivedi, S L (2008) Phenotyping reference set of chickpea (Cicer arietinum L.) for agronomic traits including resistance to legume pod borer (Helicoverpa armigera). Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Bharathi, A and Gowda, C L L and Varshney, R K and Dwivedi, S L (2008) Phenotyping reference set of foxtail millet (Setaria italica) for Agronomic Traits. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Sharma, H C and Varshney, R K and Gaur, P M and Gowda, C L L (2008) Potential for using morphological, biochemical, and molecular markers for resistance to insect pests in grain legumes. Journal of Food Legumes, 21 (4). pp. 211-217. ISSN 0970-6380

Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621

Varshney, R K and et al, . (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.

Upadhyaya, H D and Dwivedi, S L and Varshney, R K and Hoisington, D A and Gowda, C L L (2008) Using genetic and genomic resources to broaden the genetic base of cultivated groundnut. In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

Varshney, R K and Langridge, P and Graner, A (2007) Application of Genomics to Molecular Breeding of Wheat and Barley. In: Advances in Genetics. Elsevier, Amsterdam, UK, pp. 121-155. ISBN 978-0-12-374621-4

Hash, C T and Hoisington, D A and Varshney, R K and et al, . (2007) Applications of molecular markers in breeding. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India. (Unpublished)

Jayashree, B and Chandra, S and Hoisington, D A and Upadhyaya, H D and Hash, C T and Vadez, V and Varshney, R K and Senthilvel, S (2007) Bioinformatics platform for ICRISAT's global research needs. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh India. (Unpublished)

Gaur, P M and Srivastava, R K and Gowda, C L L and Pande, S and Sharma, H C and Sharma, K K and Vadez, V and Kashiwagi, J and Krishnamurthy, L and Varshney, R K and Hoisington, D A (2007) Breeding Chickpea for Improved Adaptation to the Semi-Arid Tropical Environments. In: Sustainable Agriculture for Food, Bio-Energy and Livelihood Security. Agrobios International.

Vadez, V and Krishnamurthy, L and Hash, C T and et al, . (2007) Breeding for salt tolerance in cereal and legumes: Status and prospects. Documentation. International Crops Research Institute for Semi-Arid Tropics , Patancheru, Andhra Pradesh India. (Unpublished)

Varshney, R K (2007) Chickpea Genomics Consortium on Drought Tolerance. Journal of SAT Agricultural Research, 3 (1). p. 1.

Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452

Upadhyaya, H D and Gowda, C L L and Kashiwagi, J and et al, . (2007) Core and Mini Core Approaches for Enhancing Use of Germplasm in Crop Improvement. Documentation. International Crops Research Institute for Semi-Arid Tropic, Patancheru, Andha Pradesh, India.

Varshney, R K and Nayak, S N and Jayashree, B and Eshwar, K and Upadhyaya, H D and Hoisington, D A (2007) Development of cost-effective SNP assays for chickpea genome analysis and breeding. Journal of SAT Agricultural Research, 3 (1). pp. 1-3. ISSN 0973-3094

Marcel, T C and Aghnoum, R and Durand, J and Varshney, R K and Niks, R E (2007) Dissection of the Barley 2L1.0 Region Carrying the ‘Laevigatum’ Quantitative Resistance Gene to Leaf Rust Using Near-Isogenic Lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615. ISSN 0894-0282

Hoisington, D A and Varshney, R K (2007) Diversity Arrays Technology (DArT) Low Cost, Generic Molecular Markers for Breeding and Research. Biotech News, 2 (1). pp. 6-8.

Varshney, R K and Horres, R and Molina, C and Nayak, S N and Jungmann, R and Swamy, P and Winter, P and Jayashree, B and Kahl, G and Hoisington, D A (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of SAT Agricultural Research, 5 (1). pp. 1-3. ISSN 0973-3094

Varshney, R K and Thudi, M and Aggarwal, R K and Borner, A (2007) Genic molecular markers in plants: Development and applications. In: Genomics-Assisted Crop Improvement. Springer Netherlands, Dordrecht, The Netherlands, pp. 13-29. ISBN 978-1-4020-6294-0

Amrutha, R N and Sekhar, P N and Varshney, R K and Kishor, P B K (2007) Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.). Plant Science, 172 (4). pp. 708-721. ISSN 0168-9452

Varshney, R K and Tuberosa, R (2007) Genomics-assisted crop improvement: An overview. In: Genomics-Assisted Crop Improvement. Springer Verlag, Dordrecht, The Netherlands, pp. 1-12. ISBN 978-1-4020-6294-0

Aggarwal, R K and Hendre, P S and Varshney, R K and Bhat, P R and Krishnakumar, V and Singh, L (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. TAG Theoretical and Applied Genetics, 114 (2). pp. 359-372. ISSN 1432-2242

Jayashree, B and Hanspal, M S and Srinivasan, R and Vigneshwaran, R and Varshney, R K and Spurthi, N and Eshwar, K and Ramesh, N and Chandra, S and Hoisington, D A (2007) An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms. Comparative and Functional Genomics (35604). pp. 1-7. ISSN 1531-6912

Vadez, V and Krishnamurthy, L and Serraj, R and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K and Turner, N C and Siddique, K H M (2007) Large variation in salinity tolerance in chickpea is explained by differences in sensitivity at the reproductive stage. Field Crops Research, 104 (1-3). pp. 123-129. ISSN 0378-4290

Upadhyaya, H D and etal, . (2007) Mining allelic diversity associated with drought and salinity tolerance in the reference subset of chickpea germplasm collections. In: Generation Challenge Programme Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.

Varshney, R K and Hoisington, D A and Upadhyaya, H D and Gaur, P M and Nigam, S N and Saxena, K B and Vadez, V and Sethy, N K and Bhatia, S and Aruna, R and Gowda, M V C and Singh, N K (2007) Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics. In: Genomics-Assisted Crop Improvement Vol 2: Genomics Applications in Crops. Springer Netherlands, Springer Netherlands, Netherlands, pp. 207-241. ISBN 978-1-4020-6296-4

Vadez, V and Hash, C T and Bidinger, F R and et al, . (2007) Molecular breeding for drought tolerance: Progresses, issues, orientations. Documentation. International Crops Research Institute for Semi-Arid Tropics , Patancheru, Andhra Pradesh, India. (Unpublished)

Varshney, R K (2007) Pigeonpea genomics initiative established under Indo-US agricultural knowledge initiative. Journal of SAT Agricultural Research, 3 (1). p. 1.

Varshney, R K and Beier, U and Khlestkina, K E and Kota, R and Korzun, V and Graner, A and Borner, A (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. TAG Theoretical and Applied Genetics, 114. pp. 1105-1116.

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

Marcel, T C and Varshney, R K and Barbieri, M and Jafary, H and Kock, M J D de and Graner, A and Niks, R E (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. TAG Theoretical and Applied Genetics, 114 (3). pp. 487-500. ISSN 1432-2242

Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

Jayashree, B and Ramu, P and Prasad, P and Bantte, K and Hash, C T and Chandra, S and Hoisington, D A and Varshney, R K (2006) A Database of Simple Sequence Repeats from Cereal and Legume Expressed Sequence Tags Mined in silico: Survey and Evaluation. In Silico Biology, 6 (6). pp. 607-620. ISSN 1434-3207

Koebner, R M D and Varshney, R K (2006) Development and Application of Genomic Models for Large-Crop Plant Genomes. In: Model Plants and Crop Improvement. CRC Press(Taylor & Francis), UK, pp. 1-10. ISBN 978-0-8493-3063-6

Upadhyaya, H D and Varshney, R K and Hash, C T and Hoisington, D A and Gowda, C L L and Reddy, V G and Chandra, S and Lalitha, N and Bharathi, A (2006) Development of composite collection and genotyping of foxtail millet [Setaria italic (L.) Beauv.] composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Hash, C T and et al, . (2006) Development of composite collection and genotyping of pearl millet [Pennisetum glaucum (L.) R. Br.]. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Varshney, R K and Grosse, I and Hahnel, U and Siefken, R and Prasad, M and Stein, N and Langridge, P and Altschmied, L and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. TAG Theoretical and Applied Genetics, 113 (2). pp. 239-250. ISSN 1432-2242

Vadez, V and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K (2006) Genetic variability for salinity tolerance in chickpea. In: 3rd International Conference on Legume Genomics and Genetics, 9 - 13, April, 2006.

Upadhyaya, H D and Varshney, R K and Hoisington, D A and et al, . (2006) Genotyping composite collection of finger millet [Eleusine coracana (L.) Gaertn]. In: Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105

Szira, F and Balint, A and Galiba, G and Varshney, R K and Borner, A (2006) Mapping of QTLs for drought tolerance in barley at different development stages. Vorträge Pflanzenzüchtung, 70. pp. 113-115.

Azhaguvel, P and Saraswathi, D V and Sharma, A and Varshney, R K (2006) Methodological Advancement in Molecular Markers to Delimit the Gene(s) for Crop Improvement. In: Floriculture, ornamental and plant biotechnology. Global Science Books, Isleworth, UK, pp. 460-469. ISBN 4-903313-00-X

Upadhyaya, H D and Valls, J F M and Bertolli, D and et al, . (2006) Molecular characterization of groundnut (Arachis hypogaea L.) composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

Upadhyaya, H D and Bhattacharjee, R and Hoisington, D A and Chandra, S and Varshney, R K and Reddy, K N and Saxena, K B (2006) Molecular characterization of pigeonpea [Cajanus cajan (L.) Millspaugh] composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh India.

Rostoks, N and Ramsay, L and MacKenzie, K and Cardle, L and Bhat, P R and Roose, M L and Svensson, J T and Stein, N and Varshney, R K and Marshall, D F and Graner, A and Close, T J and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661. ISSN 1091-6490

Varshney, R K and Balyan, H S and Langridge, P (2006) Wheat. In: Cereals and Millets. Genome Mapping and Molecular Breeding in Plants, 1 . Springer-Verlag , Berlin, Heidelberg, Germany, pp. 79-134. ISBN 978-3-540-34031-7

Gupta, P K and Varshney, R K (2005) Cereal Genomics: An Overview. In: Cereal Genomics. Springer Netherlands, Netherlands, pp. 1-18. ISBN 978-1-4020-2359-0

Sreenivasulu, N. and Varshney, R K and Kishore, P K and Weschke, W (2005) Functional Genomics for Tolerance to Abiotic Stress in Cereals. In: Cereal Genomics. Springer Netherlands, pp. 483-514. ISBN 978-1-4020-2359-0

Varshney, R K and Graner, A and Sorrells, M E (2005) Genomics-assisted breeding for crop improvement. Trends in Plant Science, 10 (12). pp. 621-630. ISSN 1360-1385

Varshney, R K and Korzun, V and Borner, A (2005) Molecular Maps in Cereals: Methodology and Progress. In: Cereal Genomics. Springer Netherlands, pp. 35-82. ISBN 978-1-4020-2359-0

Borner, A and Roder, M S and Chebotar, S and Varshney, R K and Weinder, A (2005) Molecular Tools for Genebank Management and Evaluation. Czech Journal of Genetics and Plant Breeding(Special Issue), 41. pp. 122-127. ISSN 1212-1975

Schulman, A H and Gupta, P K and Varshney, R K (2005) Organization of Retrotransposons and Microsatellites in Cereal Genomes. In: Cereal Genomics. Springer Netherlands, pp. 83-118. ISBN 978-1-4020-2359-0

ICRISTA (Patancheru)

Akpo, E and Bakari, H and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Comparative advantage of newly-released varieties of groundnut in Tanzania. [Policy Briefs]

IER (Cinzana)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

IFAPA (Córdoba)

Ali, L and Madrid, E and Varshney, R K and Azam, S and Millan, T and Rubio, J and Gill, J (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488. ISSN 0040-5752

IIPR(Kanpur)

Bohra, A and Saxena, R K and Saxena, K B and Sameer Kumar, C V and Varshney, R K (2014) Advances in Pigeonpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 95-110. ISBN 978-1-4614-8370-0

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

Bohra, A and Pandey, M K and Jha, U C and Singh, B and Singh, I P and Datta, D and Chaturvedi, S K and Nadarajan, N and Varshney, R K (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. pp. 1-29. ISSN 1432-2242

IITA (Ibadan)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

IITA (Kano)

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

IITA (Lilongwe)

Monyo, E S and Desmae, H and Boukar, O and Mukankusi, C and Gaur, P M and Okori, P and Motagi, B N and Ajeigbe, H A and Fatokun, C and Moukumbi, Y and Kamara, A and Omoigui, L and Arega, A and Mausch, K and Bodo, R and Beebe, S and Ojiewo, C O and Rubyogo, J and Akpo, E and Varshney, R K (2017) Legume breeding and seed systems for improved livelihoods and impact. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

IITA Ibadan

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

IITA-Kenya c/o International Livestock Research Institute (ILRI) (Nairobi)

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

INRA - Research Institute in Horticulture and Seeds (IRHS) (Beaucouze)

Pazhamala, L T and Saxena, R K and Purohit, S and Bajaj, P and Kumar, V and Garg, V and Srikanth, S and Hingane, A J and Kulshreshtha, A and Krishnamurthy, L and Sameer Kumar, C V and Verdier, J and Varshney, R K (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

INRA - Research Institute in Horticulture and Seeds (IRHS)(Beaucouze)

Pazhamala, L T and Purohit, S and Saxena, R K and Garg, V and Krishnamurthy, L and Verdier, J and Varshney, R K (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054. ISSN 0022-0957

INRA LEPSE (Montpellier)

Tardieu, F and Varshney, R K and Tuberosa, R (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398. ISSN 0022-0957

INRA(Clermont-Ferrand)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

INRA(Evry)

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

INRA(France)

Burstin, J and Gallardo, K and Mir, R R and Varshney, R K and Duc, G (2011) Improving protein content and nutrition quality. In: Biology and Breeding of Food Legumes. CAB International, Wallingford, UK, pp. 314-328. ISBN 9781845937669

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

INRA(Montpellier-Cedex)

Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X

IPK Gatersleben (Gatersleben)

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

IPK( Corrensstrasse)

Schulman, A H and Gupta, P K and Varshney, R K (2005) Organization of Retrotransposons and Microsatellites in Cereal Genomes. In: Cereal Genomics. Springer Netherlands, pp. 83-118. ISBN 978-1-4020-2359-0

IPK(Corrensstrasse)

Gupta, P K and Varshney, R K (2005) Cereal Genomics: An Overview. In: Cereal Genomics. Springer Netherlands, Netherlands, pp. 1-18. ISBN 978-1-4020-2359-0

Sreenivasulu, N. and Varshney, R K and Kishore, P K and Weschke, W (2005) Functional Genomics for Tolerance to Abiotic Stress in Cereals. In: Cereal Genomics. Springer Netherlands, pp. 483-514. ISBN 978-1-4020-2359-0

Varshney, R K and Korzun, V and Borner, A (2005) Molecular Maps in Cereals: Methodology and Progress. In: Cereal Genomics. Springer Netherlands, pp. 35-82. ISBN 978-1-4020-2359-0

IPK(Gatersleben)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

IRD, Université Montpellier, DIADE (Montpellier)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

IRRI

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

IRRI South Asia Regional Center, NSRTC Campus, G.T. Road, Collectry Farm, P.O. Industrial Estate, Varanasi

Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266

IRRI South Asia Regional Center, Varanasi

Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

IRRI(Los Baños)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

IRRI(Manila)

Vadez, V and Krishnamurthy, L and Serraj, R and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K and Turner, N C and Siddique, K H M (2007) Large variation in salinity tolerance in chickpea is explained by differences in sensitivity at the reproductive stage. Field Crops Research, 104 (1-3). pp. 123-129. ISSN 0378-4290

IRRI(Manila)

This, D and Courtois, B and Philippe, R and et al, . (2008) Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops. In: Plant & Animal Genomes XVIII Conference, 9-13 January 2010, San Diego, CA.

IRRI(Patancheru)

Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540

Ilonga Agricultural Research institute (Kilosa)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Indian Agricultural Research Institute

Saxena, R K and Prathima, C and Saxena, K B and Hoisington, D A and Singh, N K and Varshney, R K (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.). Plant Breeding, 129 (2). pp. 142-148.

Singh, R and Sharma, P and Varshney, R K and Sharma, S K and Singh, N K (2008) Chickpea Improvement: Role of Wild Species and Genetic Markers. Biotechnology & Genetic Engineering Reviews, 25. pp. 267-314.

Indian Agricultural Research Institute (Delhi)

Roorkiwal, M and Jarquin, D and Jain, A and Garg, V and Kale, S M and Singh, M K and Samineni, S and Gaur, P M and Rathore, A and Chellapilla, B and Tripathi, S and Crossa, J and Varshney, R K (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Indian Agricultural Research Institute (IARI) (Delhi)

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

Indian Agricultural Research Institute (IARI) (New Delhi)

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Dodia, S M and Joshi, B and Gangurde, S S and Thirumalaisamy, P P and Mishra, G P and Narandrakumar, D and Soni, P and Rathnakumar, A L and Dobaria, J R and Sangh, C and Chitikineni, A and Chanda, S V and Pandey, M K and Varshney, R K and Thankappan, R (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics (TSI), 132 (4). pp. 1001-1016. ISSN 0040-5752

Indian Agricultural Research Institute(New Delhi)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Indian Council of Agricultural Research (ICAR) (Delhi)

Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Indian Council of Agricultural Research (ICAR) (New Delhi)

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Indian Council of Agricultural Research (ICAR), India Institute of Pulses Research (IIPR) (Hyderabad)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Indian Council of Agricultural Research (ICAR), Indian Institute of Pulses Research (IIPR) (Kanpur)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Indian Council of Agricultural Research (ICAR)- Indian Agricultural Research Institute (IARI), New Delhi

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Indian Council of Agricultural Research (ICAR)—Central Arid Zone Research Institute (CAZRI) (Jodhpur)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Indian Council of Agricultural Research (New Delhi)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Chaturvedi, S K and Jha, S K and Singh, N P and Gaur, P M and Varshney, R K (2018) Technological And Policy Intervention For Increasing Chickpea Production In India. Pulse India, 8 (1). pp. 7-12.

Indian Council of Agricultural Research - Directorate of Groundnut Research (ICAR-DGR), (Junagadh)

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Indian Council of Agricultural Research – All India Coordinated Research Project on Pearl Millet (Jodhpur)

Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642

Indian Council of Agricultural Research – All India Coordinated Research Project on Pearl Millet, Jodhpur

Srivastava, R K and Yadav, O P and Kaliamoorthy, S and Gupta, S K and Serba, D D and Choudhary, S and Govindaraj, M and Kholová, J and Murugesan, T and Satyavathi, C T and Gumma, M K and Singh, R B and Bollam, S and Gupta, R and Varshney, R K (2022) Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects. Frontiers in Plant Science (TSI), 13. pp. 1-20. ISSN 1664-462X

Indian Council of Agricultural Research – Directorate of Groundnut Research, Junagadh

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Indian Council of Agricultural Research(New Delhi)

Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

Bhardwaj, R and Sandhu, J S and Varshney, R K and Gaur, P M and Kaur, L and Vikal, Y (2011) Synteny relationships among the linkage groups of chickpea (Cicer arietinum L.). Journal of Food Legumes, 24 (2). pp. 91-95.

Indian Council of Agricultural Research, Krishi Bhawan, New Delhi, India

Varshney, R K and Godwin, I D and Mohapatra, T and Jones, J D G and McCouch, S R (2019) A SWEET solution to rice blight. Nature Biotechnology (TSI), 37 (11). pp. 1280-1282. ISSN 1087-0156

Indian Council of Agricultural Research, RCER (Patna)

Saxena, K B and Choudhary, A K and Srivastava, R K and Bohra, A and Saxena, R K and Varshney, R K (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding (TSI), 138 (3). pp. 243-251. ISSN 0179-9541

Indian Council of Agricultural Research-Directorate of Groundnut Research (ICAR-DGR) (Junagadh)

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

Indian Council of Agricultural Research-Directorate of Groundnut Research (ICAR-DGR), (Junagadh)

Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203

Indian Council of Agricultural Research-Directorate of Groundnut Research (ICAR-DGR), Junagadh

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

Indian Council of Medical Research(New Delhi)

Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640

Indian Institute of Liver and Digestive Sciences, Liver Foundation (Kolkata)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Indian Institute of Maize Research, ICAR (Ludhiana)

Choudhary, M and Wani, S H and Kumar, P and Bagaria, P K and Rakshit, S and Roorkiwal, M and Varshney, R K (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics (TSI), 19 (5). pp. 685-701. ISSN 1438-793X

Indian Institute of Pulse Research(Kanpur)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Indian Institute of Pulses Research (IIPR) (ICAR) (Kanpur)

Paul, P J and Samineni, S and Sajja, S and Rathore, A and Das, R R and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica (TSI), 214(2) (27). pp. 1-27. ISSN 0014-2336

Indian Institute of Pulses Research (IIPR) (Kanpur)

Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947

Saxena, R K and Sameer Kumar, C V and Bohra, A and Singh, I P and Singh, N P and Varshney, R K (2017) Pigeonpea Research for Enhancing Crop Productivity. Pulse India, 2 (7). pp. 8-10.

Saxena, K B and Sameer Kumar, C V and Saxena, R K and Vijay Kumar, R and Singh, I P and Hingane, A J and Mula, M G and Patil, S B and Varshney, R K (2016) Hybrid pigeonpea: Accomplishments and challenges for the next decade. Legume Perspectives (11). pp. 30-32. ISSN 2340-1559

Sameer Kumar, C V and Singh, I P and Vijay Kumar, R and Patil, S B and Tathineni, R and Mula, M G and Saxena, R K and Hingane, A J and Rathore, A and Ravinder Reddy, CH and Nagesh Kumar, M and Sudhakar, C and Varshney, R K (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). 08-10. ISSN 2340-1559

Saxena, R K and Saxena, K B and Sameer Kumar, C V and Singh, N P and Varshney, R K (2016) Strategies for pigeonpea improvement. Legume Perspectives (11). pp. 50-51. ISSN 2340-1559

Sameer Kumar, C V and Singh, I P and Patil, S B and Mula, M G and Kumar, R V and Saxena, R K and Varshney, R K (2015) Recent advances in Pigeonpea [Cajanus cajan (L.) Millspaugh) Research. In: II International Conference on Bio-Resource and Stress Management, January 07 - 10, 2015, Hyderabad.

Indian Institute of Pulses Research (IIPR) - ICAR (Kanpur)

Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Indian Institute of Pulses Research (IIPR), Indian Council of Agricultural Research (ICAR) (Kanpur)

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Indian Institute of Pulses Research (Kanpur)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

Roorkiwal, M and Thudi, M and Gaur, P M and Upadhyaya, H D and Singh, N P and Varshney, R K (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives (7). pp. 7-9. ISSN 2340-1559

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

Indian Institute of Pulses Research - ICAR (Kanpur)

Saxena, K B and Choudhary, A K and Srivastava, R K and Bohra, A and Saxena, R K and Varshney, R K (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding (TSI), 138 (3). pp. 243-251. ISSN 0179-9541

Indian Institute of Pulses Research(Dharward)

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Indian Institute of Pulses Research(Kanpur)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Krishnamurthy, L and Gaur, P M and Basu, P S and Chaturvedi, S K and Tripathi, S and Vadez, V and Rathore, A and Varshney, R K and Gowda, C L L (2011) Large genetic variation for heat tolerance in the reference collection of chickpea (Cicer arietinum L.) germplasm. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 59-69.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Indian Institute of Pulses Research(Kanpur)

Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and Chaturvedi, S K and Basu, P S and Singh, I P (2010) Phenotyping chickpeas and pigeonpeas for adaptation to drought. In: Drought phenotyping in crops: from theory to practice. Generation Challenge Programme, pp. 347-355.

Indian Institute of Pulses Research, IIPR (Kanpur)

Sameer Kumar, C V and Mula, M G and Singh, P and Mula, R P and Saxena, R K and Ganga Rao, N V P R and Varshney, R K (2014) Pigeonpea Perspective in India. In: 1st Philippine Pigeonpea Congress, December 16-18, 2014, Mariano Marcos State University, Batac, Ilocos Norte, Philippines. (Submitted)

Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (Bogor)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (ICABIOGRAD-IAARD) (Bogor)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Indonesian Center for Agricultural Biotechnology and Genetic Resources and Development, IAARD (Bogor)

Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621

Indonesian Sweetener and Fiber Crops Research Institute, IAARD (Malang)

Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621

Indonesian Tropical Fruit Research Institute(Solok)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Information and Computational Sciences, The James Hutton Institute (Dundee)

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

Inst. for Genomic Diversity, Cornell University (Ithaca)

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Institut National d'Environnement et de Recherches Agricoles (INERA) (Ouagadougou)

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Institut Sénégalais de Recherches Agricoles (ISRA) (Dakar)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Institut Sénégalais de Recherches Agricoles (ISRA)-Centre National de Recherches Agronomiques (CNRA) (Bambey)

Faye, I and Pandey, M K and Hamidou, F and Rathore, A and Ndoye, O and Vadez, V and Varshney, R K (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647. ISSN 1573-5060

Institut Sénégalais de Recherches Agricoles (ISRA)-Centre National de Recherches Agronomiques (CNRA), Bambey, Senegal

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Institut d'Economie Rurale (IER) (Bamako)

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Institut de Recherche pour le Developement (IRD), Université de Montpellier, UMR DIADE, Montpellier

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

Institut de Recherche pour le Developpement (IRD), Université de Montpellier (Montpellier)

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology (TSI), 18(1) (29). pp. 1-18. ISSN 1471-2229

Institut de Recherche pour le Développement (IRD), University of Montpellier (Montpellier)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Institut de Recherche pour le Développement (Montpellier)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Institut de l’Environnement et de Recherches Agricoles (INERA) (Kamboinsé)

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Institut de recherche pour le développement (IRD) (Montpellier)

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Institut des Mondes Africains (IMAf) (Paris)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Institut des Mondes Africains (Paris)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Institut d’Economie Rurale (IER) (Kayes)

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Institute for Genomic Diversity, Cornell University, Ithaca, NY

Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372

Institute for Genomics, Biocomputing, and Biotechnology, Mississippi State University, Starkville

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Institute for Sustainable Agriculture, CSIC (Córdoba)

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

Ali, L and Madrid, E and Varshney, R K and Azam, S and Millan, T and Rubio, J and Gill, J (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488. ISSN 0040-5752

Institute of Field & Vegetable Crops(Novi Sad)

Neumann, K and Kobiljski, B and Dencic, S and Varshney, R K and Borner, A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Molecular Breeding, 27. pp. 37-58. ISSN 1572-9788

Institute of Agricultural Research (IAR) (Samaru)

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Institute of Agricultural Research (IAR) (Zaria)

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Institute of Agricultural Research, IAR (Samaru)

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

Institute of Agricultural Research, IER (Bamako)

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress (IAC), November 6 - 9, 2016, New Delhi, India.

Institute of Agriculture Research, IER (Bamako)

Motagi, B N and Desmae, H M and Ajeigbe, H A and Echekwu, C and Sako, D and Tabo, R and Monyo, E and Upadhyaya, H D and Varshney, R K (2016) Germplasm Enhancement for Increasing Groundnut Productivity and Production in West and Central Africa. In: 1st International Agrobiodiversity Congress, November 06-09, 2016, New Delhi, India.

Institute of Agriculture, The University of Western Australia (Crawley)

Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652

Institute of Agriculture, The University of Western Australia (Perth)

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

Institute of Agriculture, University ofWestern Australia, 35 Stirling Highway, Crawley

Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372

Institute of Biological Sciences, University of Brasília (Brasília)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Institute of Biological, Environmental and Rural Sciences, Aberystwyth University (Aberystwyth)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Institute of Biological, Environmental and Rural Sciences, Aberystwyth University (Ceredigion)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Institute of Biological, Environmental and Rural Sciences, Aberystwyth University,(Aberystwyth)

Serba, D D and Yadav, R S and Varshney, R K and Gupta, S K and Govindaraj, M and Srivastava, R K and Gupta, R and Perumal, R and Tesso, T T (2020) Genomic Designing of Pearl Millet: A Resilient Crop for Arid and Semi-arid Environments. In: Genomic Designing of Climate-Smart Cereal Crops. Springer, Cham, Switzerland, pp. 221-286. ISBN 978-3-319-93381-8

Institute of Biotechnology and Genetic Engineering (IBGE), Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia

Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818

Institute of Biotechnology, Professor Jayshankar Telangana State Agricultural University (PJTSAU) (Hyderabad)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644

Institute of Biotechnology, Professor Jayshankar Telangana State Agricultural University (PJTSAU) (Rajendranagar)

Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322

Institute of Crop Science (Japan)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Institute of Crop Science, Chinese Academy of Agricultural Sciences

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan

Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752

Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China

Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752

Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS) (Beijing)

Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052

Institute of Epidemiology and Resistance Resources

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

Institute of Experimental Botany of the Czech Academy of Sciences(Olomouc)

Doležalová, A and Sládeková, L and Šimoníková, D and Holušová, K and Karafiátová, M and Varshney, R K and Doležel, J and Hřibová, E (2022) Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting Fluorescence in situ Hybridization. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research (Šlechtitelů)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

Institute of Food Science and Technology of Chinese Academy of Agricultural Sciences (Beijing)

Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X

Institute of Frontier Technology(Tirupati)

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

Institute of Genomics for Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University (Fujian)

Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X

Institute of Life Sciences, Scuola Superiore Sant’Anna, Pisa

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Institute of Oil Crops, Fujian Agriculture and Forestry University (Fuzhou)

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Institute of Oil Crops, Fujian Agriculture and Forestry University, Fuzhou 350002, China

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Institute of Plant Breeding, Genetics and Genomics, University of Georgia (Athens)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Institute of Plant Breeding, Genetics and Genomics, University of Georgia (Tifton)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Institute of Plant Breeding, Genetics, and Genomics, The University of Georgia (Athens)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Institute of Plant Genetics and Crop Plant Research(Corrensstrasse)

Varshney, R K and Langridge, P and Graner, A (2007) Application of Genomics to Molecular Breeding of Wheat and Barley. In: Advances in Genetics. Elsevier, Amsterdam, UK, pp. 121-155. ISBN 978-0-12-374621-4

Azhaguvel, P and Saraswathi, D V and Sharma, A and Varshney, R K (2006) Methodological Advancement in Molecular Markers to Delimit the Gene(s) for Crop Improvement. In: Floriculture, ornamental and plant biotechnology. Global Science Books, Isleworth, UK, pp. 460-469. ISBN 4-903313-00-X

Varshney, R K and Graner, A and Sorrells, M E (2005) Genomics-assisted breeding for crop improvement. Trends in Plant Science, 10 (12). pp. 621-630. ISSN 1360-1385

Borner, A and Roder, M S and Chebotar, S and Varshney, R K and Weinder, A (2005) Molecular Tools for Genebank Management and Evaluation. Czech Journal of Genetics and Plant Breeding(Special Issue), 41. pp. 122-127. ISSN 1212-1975

Instituto Nacional de Tecnología Agropecuaria(Buenos Aires)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Instituto de Agrobiotecnología y Biología Molecular (IABIMO), INTA-CONICET, Nicolas Repetto y Los Reseros Hurlingham, Buenos Aires

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Instituto de Botánica del Nordeste (CONICET-UNNE) (Corrientes)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Instituto de Investigaciones Agrobiotecnológicas

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Interdepartmental Genetics Graduate Program, Iowa State University (Ames)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Interdepartmental Genetics Program, Iowa State University, Ames, IA, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

International Center for Agricultural Research in the Dry Areas (Amman)

Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621

International Center for Agricultural Research in the Dry Areas (ICARDA) (Beirut)

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

International Center for Agricultural Research in the Dry Areas (Morogoro)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

International Center for Agricultural Research in the Dry Areas (Rabat)

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621

International Center for Biosaline Agriculture (Dubai)

Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372

International Center for Biosaline Agriculture(Dubai)

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

International Center for Biosaline Agriculture, Academic City, Dubai, United Arab Emirates, Canberra

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

International Centre for Agricultural Research in the Dry Areas (Cairo)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

International Centre for Agricultural Research in the Dry Areas (Rabat)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

International Centre for Tropical Agriculture (CIAT) (Arusha)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

International Crop Research Center for Stress Resistance/College of Life Sciences, Guangzhou University (Guangzhou)

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

International Institute of Tropical Agriculture (IITA) (Kano)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

International Institute of Tropical Agriculture (IITA), Arusha, Tanzania

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Better-off Women Boosting Groundnut Business in Ghana. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 91-104. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Breakthroughs in Groundnut Production Communities in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 77-83. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) A Brief Overview of Smallholder Farmers’ Access to Seed of Improved Legume Varieties. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 1-2. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Common Bean Value Chain Actors Share Their Feeling About TL Projects in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 33-56. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Concluding Remarks: The Tropical Legumes Projects Empowered Communities in a Wide Variety of Assets. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 105-106. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Empowered Communities Tell Their Own Stories from Common Bean Production in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 65-75. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Enthusiasm of Actors Within the Groundnut Value Chain Sharing Impact Stories in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 57-64. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Impact Stories and Testimonies from Diverse Actors in Groundnut Value Chain in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 3-32. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Women at the Center of Cowpea Value Chain Development in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 85-90. ISBN 978-981-15-0844-8

International Institute of Tropical Agriculture (IITA), Kano, Nigeria

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Better-off Women Boosting Groundnut Business in Ghana. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 91-104. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Breakthroughs in Groundnut Production Communities in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 77-83. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) A Brief Overview of Smallholder Farmers’ Access to Seed of Improved Legume Varieties. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 1-2. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Common Bean Value Chain Actors Share Their Feeling About TL Projects in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 33-56. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Concluding Remarks: The Tropical Legumes Projects Empowered Communities in a Wide Variety of Assets. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 105-106. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Empowered Communities Tell Their Own Stories from Common Bean Production in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 65-75. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Enthusiasm of Actors Within the Groundnut Value Chain Sharing Impact Stories in Uganda. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 57-64. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Impact Stories and Testimonies from Diverse Actors in Groundnut Value Chain in Tanzania. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 3-32. ISBN 978-981-15-0844-8

Akpo, E and Ojiewo, C O and Omoigui, L O and Rubyogo, J C and Varshney, R K (2020) Women at the Center of Cowpea Value Chain Development in Nigeria. In: Sowing Legume Seeds, Reaping Cash. Springer Nature Singapore Pte Ltd, Singapore, pp. 85-90. ISBN 978-981-15-0844-8

International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Rd, Ibadan

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

International Institute of Tropical Agriculture (Nigeria)

Upadhyaya, H D and Dwivedi, S L and Varshney, R K and Gowda, C L L and Bhattacharjee, R and Hoisington, D A and Vadez, V (2009) Enhancing the value of legume genetic resources using core/mini core and applied genomic tools. In: International conference on Current trends in Biotechnology, 19-21 Feb. 2009, Meerut, India.

International Institute of Tropical Agriculture (South Africa)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

International Institute of Tropical Agriculture(Ibadan)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

International Institute of Tropical Agriculture, Dar es Salaam

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

International Institute of Tropical Agriculture, Kano, Nigeria

Akpo, E and Ojiewo, C O and Kapran, I and Omoigui, L O and Diama, A and Varshney, R K (2021) Enhancing Smallholder Farmers’ Access to Seed of Improved Legume Varieties Through Multi-Stakeholder Platforms. Springer, Singapore. ISBN 978-981-15-8014-7

International Livestock Research Institute (ILRI), Patancheru

Govintharaj, P and Maheswaran, M and Blümmel, M and Sumathi, P and Vemula, A K and Rathore, A and Sivasubramani, S and Kale, S M and Varshney, R K and Gupta, S K (2021) Understanding Heterosis, Genetic Effects, and Genome Wide Associations for Forage Quantity and Quality Traits in Multi-Cut Pearl Millet. Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

International Livestock Research Institute(Nairobi)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

International Maize and Wheat Improvement Center (CIMMYT) (Beijing)

Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052

International Maize and Wheat Improvement Center (CIMMYT) (Mexico City)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

International Maize and Wheat Improvement Center (CIMMYT) (Mexico)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

Roorkiwal, M and Jarquin, D and Jain, A and Garg, V and Kale, S M and Singh, M K and Samineni, S and Gaur, P M and Rathore, A and Chellapilla, B and Tripathi, S and Crossa, J and Varshney, R K (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

International Maize and Wheat Improvement Center (CIMMYT), Nairobi, Kenya

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

International Maize and Wheat Improvement Center (CYMMIT), Mexico

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

International Maize and Wheat Improvement Center (El Batan)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

International Potato Center (CIP) 1895 Avenida La Molina, Lima Peru 12, Lima

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

International Potato Center (Lima)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

International Rice Research Institute (Hyderabad)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

International Rice Research Institute (IRRI), IRRI South Asia Hub, ICRISAT (Patancheru)

Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266

International Rice Research Institute (IRRI), IRRI South Asia Hub, Patancheru (Hyderabad)

Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752

International Rice Research Institute (IRRI),South-Asia Hub,ICRISAT Campus, Patancheru

Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

International Rice Research Institute (IRRI). Hyderabad

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

International Rice Research Institute (Los Banos)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

International Rice Research Institute (Manila)

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

International Rice Research Institute (Metro Manila)

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Abbai, R and Singh, V K and Nachimuthu, V V and Sinha, P and Selvaraj, R and Vipparla, A K and Singh, A K and Singh, U M and Varshney, R K and Kumar, A (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal (TSI), 17 (8). pp. 1612-1622. ISSN 14677644

International Rice Research Institute (Philippines)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

International Rice Research Institute, Metro Manila (Los Baños)

Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811

International Rice Research Institute, South Asia Hub (Patancheru)

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

International Rice Research Institute, South Asia Hub, ICRISAT (Patancheru)

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

International Rice Research Institute, South Asia Hub, ICRISAT, Hyderabad

Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266

International Rice Research Institute, South-Asia Hub, (Patancheru)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

International Rice Research Institute, South-Asia Hub, ICRISAT Campus (Hyderabad)

Abbai, R and Singh, V K and Nachimuthu, V V and Sinha, P and Selvaraj, R and Vipparla, A K and Singh, A K and Singh, U M and Varshney, R K and Kumar, A (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal (TSI), 17 (8). pp. 1612-1622. ISSN 14677644

International RiceResearchInstitute

Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799

International Wheat Genome Sequencing Consortium 2841 NE Marywood Ct, Lee's Summit, MO

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Intertek - AgriTech (Elevenborgsvägen)

Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811

Ionian University (Argostoli Kephalonia)

Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109

Iowa State University (Ames)

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

Iowa State University(Amens)

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Iowa State University(Ames)

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

Iwate Biotechnology Research Center(Kitakami)

Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173

Iwate Biotechnology Research Center, Kitakami (Iwate)

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

J. Craig Venter Institute(Rockville)

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

J.Craig Venter Institute(Rockville)

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

JCVI(Rockville)

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

JIRCAS(Tsukuba)

Krishnamurthy, L and Kashiwagi, J and Tobita, S and Ito, O and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Sheshshayee, M S and Singh, Sube and Vadez, V and Varshney, R K (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 14 (12). pp. 1350-1361. ISSN 1445-4408

JNKVV(Jabalpur)

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

JNTU

Gautami, B and Ravi, K and Narasu, M L and Hoisington, D A and Varshney, R K (2009) Novel set of groundnut SSR markers for germplasm analysis and interspecific transferability. International Journal of Integrative Biology, 7 (2). pp. 100-106.

JNTU (Hyderabad)

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290

JNTU(Hyderabad)

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

JNTUH (Hyderabad)

Somanaboina, A K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Development of transgenic tomato (Solanum lycoperscicum L.) by heterologous expression of osmotin-like protein (OLP) and chitinase (Chi11) genes for salt and drought stress tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Palavalasa, H K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Genome wide analysis of sodium transporters and expression of Na+/H+-antiporter-like protein (SbNHXLP) gene in tomato for salt tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

JNU Campus

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

Jadavpur University(Kolkata)

Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437

James Bradeen University of Minnesota(St. Paul)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

James D. Watson Institute of Genome Science (Hangzhou)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

James D. Watson Institute of Genome Sciences (Hangzhou)

Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X

Jamia Millia Islamia (New Delhi)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Japan International Research Center for Agricultural Sciences(Ibaraki)

Kashiwagi, J and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Varshney, R K and Tobita, S (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 (1). pp. 88-95. ISSN 0378-4290

JapancJawaharlal Nehru Technological University (Hyderabad)

Purushothaman, R and Thudi, M and Krishnamurthy, L and Upadhyaya, H D and Kashiwagi, J and Gowda, C L L and Varshney, R K (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174. pp. 1-11. ISSN 0378-4290

Jawaharlal Nehru Agricultural University (Jabalpur)

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

Jawaharlal Nehru Krishi Vishwa Vidyalaya (JNKVV) (Jabalpur)

Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743

Jawaharlal Nehru Krishi Vishwa Vidyalaya (JNKVV), Jabalpur

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Jawaharlal Nehru Technological University (Hyderabad)

Jacob, S and Sajjalaguddam, R R and Kumar, K V K and Varshney, R K and Sudini, H (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology. pp. 1-9. ISSN 1610-739X

Jawaharlal Nehru Technological University Hyderabad (JNTUH) (Hyderabad)

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

Jawarharlal Nehru KrishiVishwaVidyalaya (JNKVV) (Jabalpur)

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Jiangsu University(Zhenjiang)

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Jiangsu Yanjiang Institute of Agricultural Sciences (Nantong)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Johann Wolfgang Goethe - University(Frankfurt am Main)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

John Bingham Laboratory (UK)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

John Innes Center (Norwich)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

John Innes Centre (Norwich)

Varshney, R K and Koebner, R M D (2007) Model Plants and Crop Improvement. CRC Press. ISBN 978‑0‑8493‑3063‑6

John Innes Centre(Norwich)

Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372

John Innes Centre, Norwich Research Park (Norwich)

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

Johnson Shoyama Graduate School of Public Policy, University of Saskatchewan, 101 Diefenbaker

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Vienna

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Junagadh Agricultural University (JAU) (Junagadh)

Janila, P and Radhakrishnan, T and Murali, T V and Bera, S K and Dobariya, K L and Nigam, S N and Varshney, R K and Pandey, M K and Manohar, S S and Manivannan, N and Vasanthi, R P (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, October 10 - 12, 2018, Stellenbosch, South Africa.

Junagadh Agricultural University (JAU), (Jamnagar)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Junagadh Agricultural University (Jamnagar)

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

Junagadh Agricultural University (Junagadh)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Junagadh Agricultural University(Junagadh)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Junagadh Agricultural University, (Junagadh)

Shasidhar, Y and Variath, M T and Vishwakarma, M K and Manohar, S S and Gangurde, S S and Sriswathi, M and Sudini, H and Dobariya, K L and Bera, S K and Radhakrishnan, T and Pandey, M K and Janila, P and Varshney, R K (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal (TSI), 8 (1). pp. 1-15. ISSN 22145141

Junagadh Agricultural University, Jamnagar (Gujarat)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Justus Liebig University Giessen(Giessen)

Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372

K.J. Frey Chair in Agronomy at Iowa State University (Iowa)

Lübberstedt, T and Varshney, R K (2013) Diagnostics in Plant Breeding. Springer, Netherlands. ISBN 978-94-007-5686-1

KDRI(Kisarazu)

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Kano Agricultural and Rural Development Authority (KNARDA) (Kano)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Kansas State University(Manhattan)

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Kasetsart University (Kamphaeng Saen)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Kazusa DNA Research Institute (Chiba)

Kolekar, R M and Sujay, V and Shirasawa, K and Sukruth, M and Khedikar, Y P and Gowda, M V C and Pandey, M K and Varshney, R K and Bhat, R S (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156. ISSN 0014-2336

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

Kazusa DNA Research Institute (KDRI) (Chiba)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Kazusa DNA Research Institute(Chiba)

Jadhav, M P and Patil, M D and Hampannavar, M and Venkatesh, - and Dattatreya, P and Shirasawa, K and Janila, P and Pandey, M K and Varshney, R K and Bhat, R S (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker-assisted backcross breeding. Crop Science (TSI), 61 (4). pp. 2435-2443. ISSN 0011-183X

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Kazusa DNA Research Institute(Kisarazu)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Kazusa DNA Research Institute, Department of Frontier Research (Kisarazu)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Key Lab of Biology and Genetic Improvement of Oil Crops, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, (CAAS), Wuhan

Raza, A and Tabassum, J and Kudapa, H and Varshney, R K (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology (TSI). pp. 1-24. ISSN 0738-8551

Key Laboratory for Peanut Biology, Genetics and Breeding, Ministry of Agriculture, Shandong Peanut Research Institute (Qingdao)

Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640

Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Wuhan, China

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan

Liu, N and Huang, L and Chen, W and Wu, B and Pandey, M K and Luo, H and Zhou, X and Guo, J and Chen, H and Huai, D and Chen, Y and Lei, Y and Liao, B and Ren, X and Varshney, R K and Jiang, H (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping. BMC Genetics (TSI), 21 (1). pp. 1-12. ISSN 1471-2156

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crop Research Institute (OCRI) of Chinese Academy of Agricultural Sciences (CAAS),Wuhan

Yu, B and Jiang, H and Pandey, M K and Huang, L and Huai, D and Zhou, X and Kang, Y and Varshney, R K and Sudini, H and Ren, X and Luo, H and Liu, N and Chen, W and Guo, J and Li, W and Ding, Y and Jiang, Y and Lei, Y and Liao, B (2020) Identification of Two Novel Peanut Genotypes Resistant to Aflatoxin Production and Their SNP Markers Associated with Resistance. Toxins (TSI), 12 (156). pp. 1-16. ISSN 2072-6651

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences (Wuhan)

Yu, B and Huai, D and Huang, L and Kang, Y and Ren, X and Chen, Y and Zhou, X and Luo, H and Liu, N and Chen, W and Lei, Y and Pandey, M K and Sudini, H and Varshney, R K and Liao, B and Jiang, H (2019) Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.). BMC Genetics (TSI), 20 (1). pp. 1-13. ISSN 1471-2156

Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (CAAS),(Wuhan)

Luo, H and Pandey, M K and Zhi, Y and Zhang, H and Xu, S and Guo, J and Wu, B and Chen, H and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Sudini, H and Varshney, R K and Lei, Y and Liao, B and Jiang, H (2020) Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (Wuhan)

Luo, H and Pandey, M K and Khan, A W and Guo, J and Wu, B and Cai, Y and Huang, L and Zhou, X and Chen, Y and Chen, W and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (7). pp. 1248-1260. ISSN 1467-7644

Zhao, J and Huang, L and Ren, X and Pandey, M K and Wu, B and Chen, Y and Zhou, X and Chen, W and Xia, Y and Li, Z and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2017) Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Frontiers in Plant Science, 8 (2105). pp. 1-13. ISSN 1664-462X

Huang, L and Ren, X and Wu, B and Li, X and Chen, W and Zhou, X and Chen, Y and Pandey, M K and Jiao, Y and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2016) Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports, 6 (39478). pp. 1-10. ISSN 2045-2322

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, (Wuhan)

Lu, Q and Hong, Y and Li, S and Liu, H and Li, H and Zhang, J and Lan, H and Liu, H and Li, X and Wen, S and Zhou, G and Varshney, R K and Jiang, H and Chen, X and Liang, X (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics (TSI), 20 (1). pp. 1-9. ISSN 1471-2164

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, China

Zhou, X and Guo, J and Pandey, M K and Varshney, R K and Huang, L and Luo, H and Liu, N and Chen, W and Lei, Y and Liao, B and Jiang, H (2021) Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies. Frontiers in Plant Science (TSI), 12 (637284). pp. 1-14. ISSN 1664-462X

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of AgriculturalSciences (CAAS), (Wuhan)

Luo, H and Pandey, M K and Khan, A W and Wu, B and Guo, J and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (12). pp. 2356-2369. ISSN 1467-7644

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of AgriculturalSciences, (Wuhan)

Huang, L and Liu, X and Pandey, M K and Ren, X and Chen, H and Xue, X and Liu, N and Huai, D and Chen, Y and Zhou, X and Luo, H and Chen, W and Lei, Y and Liu, K and Xiao, Y and Varshney, R K and Liao, B and Jiang, H (2019) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal (TSI), 18 (3). pp. 779-790. ISSN 1467-7644

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy ofAgricultural Sciences (Wuhan)

Luo, H and Ren, X and Li, Z and Xu, Z and Li, X and Huang, L and Zhou, X and Chen, Y and Chen, W and Lei, Y and Liao, B and Pandey, M K and Varshney, R K and Guo, B and Jiang, X and Liu, F and Jiang, H (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (58). pp. 1-12. ISSN 1471-2164

Key Laboratory of Crop Physiology Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University (Fuzhou)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Key Laboratory of Oil Crops in Huanghuaihai Plains, Ministry of Agriculture and Rural Affairs (Zhengzhou)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Key Laboratory of Peanut Biology and Genetic Improvement, Ministry of Agriculture, Shandong Peanut Research Institute, Wannianquan Road, Licang District, Qingdao

Wang, X and Xu, P and Ren, Y and Yin, L and Li, S and Wang, Y and Shi, Y and Li, H and Cao, X and Chi, X and Yu, T and Pandey, M K and Varshney, R K and Yuan, M (2020) Genome-wide identification of meiotic recombination hot spots detected by SLAF in peanut (Arachis hypogaea L.). Scientific Reports (TSI), 10 (1). ISSN 2045-2322

Key Laboratory of Peanut Biology and Genetic Improvement, Shandong Peanut Research Institute, Qingdao

Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425

King Abdullah University of Science & Technology (KAUST), Thuwal

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Krishi Vigyan Kendra, Rama Krishna Mission Ashram (Ranchi)

Pratap, A and Chaturvedi, S K and Tomar, R and Rajan, N and Malviya, N and Thudi, M and Saabale, P R and Prajapati, U and Varshney, R K and Singh, N P (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics. pp. 1-9. ISSN 1617-4615

Krishidhan Seeds Pvt Ltd (Jalna)

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Krishidhan Seeds Pvt. Ltd. (Hyderabad)

Saxena, R K and Patel, K and Sameer Kumar, C V and Tyagi, K and Saxena, K B and Varshney, R K (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics (TSI). pp. 1-10. ISSN 0040-5752

Kunming University of Science and Technology (Yunnan)

Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452

Kushlan Institute for Tropical Science, Fairchild Tropical Botanic Garden (Coral Gables)

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

L.H. Bailey Hortorium, Department of Plant Biology, Cornell University (New York)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

LMU

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

Laboratoire Génome et Développement des Plantes, CNRS (Perpignan)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Laboratoire Génome et Développement des Plantes, Université de Perpignan (Perpignan)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux, Centre de Recherche de Bel Air (Dakar)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Laboratoire Mixte International LAPSE (Dakar)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Laboratoire de biométrie et Biologie Evolutive, Université Lyon 1 (Villeurbanne)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Laboratory of Applied Entomology, FAST-Dassa), National University of Sciences Technologies Engineering and Mathematics of Abomey (UNSTIM), BP 14 Dassa-Zoumé, Benin

Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758

Laboratory of Biotechnology, Genetic Resources and Plant and Animal Breeding (BIORAVE), Faculty of Sciences and Technology of Dassa (FAST-Dassa), National University of Sciences Technologies Engineering and Mathematics of Abomey (UNSTIM), Dassa-Zoume

Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758

Laboratory of Translational Research on Transgenic Crops, Department of Botany, University of Calcutta, Kolkata

Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644

Lake Zone Agricultural Research Institute, Ukiriguru (Mwanza)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Land Institute(Salina)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Law School, University of Queensland, St Lucia, QLD, Australia

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Legume & Oil Crop Research Division (Gyeongnamdo)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Legume Biotechnology Laboratory, School of Agriculture and Biology, Shanghai Jiao Tong University (Shanghai)

Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X

Legume Research, Mars Incorporated, Athens

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

Leibniz Institute Pflanzengenet & Kulturpflanzenforsch(Gatersleben)

Neumann, K and Kobiljski, B and Dencic, S and Varshney, R K and Borner, A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Molecular Breeding, 27. pp. 37-58. ISSN 1572-9788

Leibniz Institute of Plant Genetics & Crop Plant Research(Gatersleben)

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Varshney, R K and Thiel, T and Sretenovic-Rajicic, T and Baum, M and Valkoun, J and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Molecular Breeding, 22 (1). pp. 1-13. ISSN 1380-3743

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) (Gatersleben)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)(Corrensstrasse)

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Corrensstr

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Leibniz Institute of Plant Genetics and Crop Plant Research(Corrensstrasse)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Tuberosa, R and Graner, A and Varshney, R K (2011) Genomics of plant genetic resources: an introduction. Plant Genetic Resources, 9 (2). pp. 151-154. ISSN 1479-2621

Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266

Witzel, K and Weidner, A and Surabhi, G K and Varshney, R K and Kunze, G and Buck-Sorlin, G H and Borner, A and Mock, H P (2010) Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination. Plant, Cell and Environment, 33 (2). pp. 211-222.

Salem, K F M and Varshney, R K and Roder, M S and Borner, A (2010) EST-SSR based estimates on functional genetic variation in a barley (Hordeum vulgare L.) collection from Egypt. Genetic Resources and Crop Evolution, 57. pp. 515-525.

Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

Chabane, K and Varshney, R K and Graner, A and Valkoun, J (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881. ISSN 1573-5109

Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452

Marcel, T C and Aghnoum, R and Durand, J and Varshney, R K and Niks, R E (2007) Dissection of the Barley 2L1.0 Region Carrying the ‘Laevigatum’ Quantitative Resistance Gene to Leaf Rust Using Near-Isogenic Lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615. ISSN 0894-0282

Varshney, R K and Thudi, M and Aggarwal, R K and Borner, A (2007) Genic molecular markers in plants: Development and applications. In: Genomics-Assisted Crop Improvement. Springer Netherlands, Dordrecht, The Netherlands, pp. 13-29. ISBN 978-1-4020-6294-0

Varshney, R K and Beier, U and Khlestkina, K E and Kota, R and Korzun, V and Graner, A and Borner, A (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. TAG Theoretical and Applied Genetics, 114. pp. 1105-1116.

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

Marcel, T C and Varshney, R K and Barbieri, M and Jafary, H and Kock, M J D de and Graner, A and Niks, R E (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. TAG Theoretical and Applied Genetics, 114 (3). pp. 487-500. ISSN 1432-2242

Varshney, R K and Grosse, I and Hahnel, U and Siefken, R and Prasad, M and Stein, N and Langridge, P and Altschmied, L and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. TAG Theoretical and Applied Genetics, 113 (2). pp. 239-250. ISSN 1432-2242

Rostoks, N and Ramsay, L and MacKenzie, K and Cardle, L and Bhat, P R and Roose, M L and Svensson, J T and Stein, N and Varshney, R K and Marshall, D F and Graner, A and Close, T J and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661. ISSN 1091-6490

Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany

Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Leibniz Institute of Plant Genetics and Crops Plant Research (IPK), Gatersleben

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) (Gatersleben)

Jain, A and Roorkiwal, M and Kale, S and Garg, V and Yadala, R and Varshney, R K (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE (TSI), 14 (3). pp. 1-13. ISSN 1932-6203

Lincoln University (Jefferson City)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Lindsay Lane (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Lira University(Lira)

Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540

Lochow-Petkus GmbH(Grimsehlstraße)

Varshney, R K and Beier, U and Khlestkina, K E and Kota, R and Korzun, V and Graner, A and Borner, A (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. TAG Theoretical and Applied Genetics, 114. pp. 1105-1116.

Louisiana State University (Baton Rouge)

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

Louisiana State University (LSU) (Baton Rouge)

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

Louisiana State University Agricultural Center(Baton Rouge)

Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811

Lowa State University(Ames)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Ludwig‐Maximilians‐Universität München (Munich)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

M. V. Lomonosov Moscow State University (Moscow)

Saxena, R K and Obala, J and Sinjushin, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784. ISSN 0040-5752

MACROGEN Inc (Seoul)

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

MACROGEN, Inc. (Seoul)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

MARS-Wrigley(Chicago)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

MPKV(Rahuri)

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

MR DAP, CIRAD(Montpellie)

Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266

MU Institute of Data Science and Informatics, University of Missouri, Columbia

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Machakos University (Machakos)

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Macrogen Millennium Genomics Company (Shenzhen)

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Mahatma Phule Agricultural University(Rahuri)

Kulwal, P L and Thudi, M and Varshney, R K (2013) Crop breeding for sustainable agriculture, genomics interventions in. In: Sustainable Food Production. Springer, New York, pp. 501-513. ISBN 978-1-4614-5796-1

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Mahatma Phule Krishi Vidyapeeth (Dhule)

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

Mahatma Phule Krishi Vidyapeeth (MPKV), (Dhule)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Mahatma Phule Krishi Vidyapeeth (MPKV), (Rahuri)

Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Mahatma Phule Krishi Vidyapeeth (MPKV), Jalgaon

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Mahatma Phule Krishi Vidyapeeth(Rahuri)

Kulwal, P L and Mir, R R and Varshney, R K (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal, 20. pp. 1021-1030. ISSN 1467-7652

Main Oilseeds Research Station, Junagadh Agricultural University (JAU) (Junagadh)

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452

Main Oilseeds Research Station, Junagadh Agricultural University (JAU), (Junagadh)

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Main Oilseeds Research Station, Junagadh Agricultural University(JAU), (Junagadh)

Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203

Main Oilseeds Research Station, Junagadh Agricultural University, Junagadh, Gujarat

Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Malviya National Institute of Technology (Jaipur)

Chaturvedi, S K and Singh, N P and Gaur, P M and Mishra, N and Alok, D and Sumit, S and Varshney, R K (2017) Efforts and strategies for alleviation of drought tolerance in chickpea in India. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mars Chocolate North America(Hackettstown)

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

Mars Wrigley Confectionery, Center for Applied Genetic technologies, (Athens)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Mars-Wrigley, Chicago, USA

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Max Planck Institute for Molecular Plant Physiology(Potsdam-Golm)

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Max Planck Institute for Plant Breeding Research

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

Max Planck Institute of Molecular Plant Physiology (Potsdam)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Max-Planck-Institute of Molecular Plant Physiology(Potsdam-Golm)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

McGill University(Montreal)

Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060

Melkassa Agricultural Research Ceneter (Nazret)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Menoufia University

Salem, K F M and Varshney, R K and Roder, M S and Borner, A (2010) EST-SSR based estimates on functional genetic variation in a barley (Hordeum vulgare L.) collection from Egypt. Genetic Resources and Crop Evolution, 57. pp. 515-525.

Menoufia University(Sadat)

Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621

Metabolon, Inc (Durham)

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Michigan State University(East Lansing)

Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067

Middle Southern Area Genomics Laboratory, US Department of Agriculture–Agricultural Research Service (Stoneville)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Millennium Genomics Inc (Shenzhen)

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Ministry of Rural Development and Food (Argostoli Kephalonia)

Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109

Mississippi State University(Mississippi State)

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Moderna (Cambridge)

Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642

Mohammed V University of Rabat(Rabat)

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

MolBreeding Biotechnology Co., Ltd. (Shijiazhuang)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

MolBreeding Biotechnology Co., Ltd., (Shijiazhuang)

Lu, Q and Hong, Y and Li, S and Liu, H and Li, H and Zhang, J and Lan, H and Liu, H and Li, X and Wen, S and Zhou, G and Varshney, R K and Jiang, H and Chen, X and Liang, X (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics (TSI), 20 (1). pp. 1-9. ISSN 1471-2164

Molecular Systems Biology (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Althanstrasse

Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762

Molecular Systems Biology (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Althanstrasse 14, Vienna

Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372

Molecular Systems Biology (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Vienna, Austria

Weckwerth, W and Ghatak, A and Bellaire, A and Chaturvedi, P and Varshney, R K (2020) PANOMICS meets germplasm. Plant Biotechnology Journal (TSI), 18 (7). pp. 1507-1525. ISSN 1467-7644

Molecular Systems Biology Lab (MOSYS), Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Monash Asia Institute, Monash University (Melbourne)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Monsanto Company(Creve Coeur Missouri)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Monsanto Company(Missouri)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Monsanto Research Centre(Bangalore)

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

Montana BioAgriculture, Inc., Missoula, MT, USA

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

Montpellier SupAgro

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Mountain Research Centre for Field Crops-Khudwani Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (Srinagar)

Choudhary, M and Wani, S H and Kumar, P and Bagaria, P K and Rakshit, S and Roorkiwal, M and Varshney, R K (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics (TSI), 19 (5). pp. 685-701. ISSN 1438-793X

Mozambique Institute of Agricultural Research (Maputo)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Msekera Research Institute (Chipata)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Murdoch University (Australia)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Murdoch University (Murdoch)

Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372

Majhi, K and Let, M and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. Environmental Research (TSI), 223. ISSN 0013-9351

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Murdoch University(Murdoch)

Huai, D and Xue, X and Wu, J and Pandey, M K and Liu, N and Huang, L and Yan, L and Chen, Y and Wang, X and Wang, Q and Kang, Y and Wang, Z and Jiang, H and Varshney, R K and Liao, B and Lei, Y (2024) Enhancing peanut nutritional quality by editing AhKCS genes lacking natural variation. Plant Biotechnology Journal. pp. 1-3. ISSN 1467-7644

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811

Pandey, M K and Gangurde, S S and Shasidhar, Y and Sharma, V and Kale, S M and Khan, A W and Shah, P and Joshi, P and Bhat, R S and Janila, P and Bera, S K and Varshney, R K (2024) High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut. BMC Plant Biology (TSI), 24. pp. 1-16. ISSN 1471-2229

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology. ISSN 1432-2056

Dutta, B and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Delving into the lifestyle of Sundarban Wetland resident, biofilm producing, halotolerant Salinicoccus roseus: a comparative genomics-based intervention. BMC Genomics (TSI), 24. pp. 1-15. ISSN 1471-2164

Kabiraj, A and Halder, U and Panja, A S and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Detailed genomic and biochemical characterization and plant growth promoting properties of an arsenic-tolerant isolate of Bacillus pacificus from contaminated groundwater of West Bengal, India. Biocatalysis and Agricultural Biotechnology (TSI), 52. ISSN 1878-8181

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372

Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021

Huai, D and Wu, J and Xue, X and Hu, M and Zhi, C and Pandey, M K and Liu, N and Huang, L and Bai, D and Yan, L and Chen, Y and Wang, X and Kang, Y and Wang, Z and Jiang, H and Lei, Y and Varshney, R K and Liao, B (2023) Red fluorescence protein (DsRed2) promotes the screening efficiency in peanut genetic transformation. Frontiers in Plant Science (TSI), 14. 01-11. ISSN 1664-462X

Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16. pp. 1-19. ISSN 1940-3372

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genesand diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16 (4). pp. 1-19. ISSN 1940-3372

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Babele, P K and Kudapa, H and Singh, Y and Varshney, R K and Kumar, A (2022) Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

Xiao, Y and Liu, H and Du, P and Liang, X and Li, H and Lu, Q and Li, S and Liu, H and Hong, Y and Varshney, R K and Chen, X (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379. ISSN 0308-8146

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

Lu, Q and Liu, H and Hong, Y and Liang, X and Li, S and Liu, H and Li, H and Wang, R and Deng, Q and Jiang, H and Varshney, R K and Pandey, M K and Chen, X (2022) Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). Frontiers in Plant Science (TSI), 13. 01-11. ISSN 1664-462X

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Tayade, A T and Motagi, B N and Jadhav, M P and Nadaf, A S and Koti, R V and Gangurde, S S and Sharma, V and Varshney, R K and Pandey, M K and Bhat, R S (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218. pp. 1-10. ISSN 1573-5060

Kulwal, P L and Mir, R R and Varshney, R K (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal, 20. pp. 1021-1030. ISSN 1467-7652

Xiao, Y and Liu, H and Lu, Q and Li, H and Liu, Q and Li, S and Liu, H and Varshney, R K and Liang, X and Hong, Y and Chen, X (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155. ISSN 0963-9969

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

Doležalová, A and Sládeková, L and Šimoníková, D and Holušová, K and Karafiátová, M and Varshney, R K and Doležel, J and Hřibová, E (2022) Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting Fluorescence in situ Hybridization. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Varshney, R K (2021) The Plant Genome special issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement. The Plant Genome (TSI), 14 (3). pp. 1-4. ISSN 1940-3372

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

Murdoch University(Perth)

Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Myongji University, (Yongin)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

NCGR

Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.

NCGR (New Mexico)

Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647

NCGR(New Mexico)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

NCGR(Santa Fe)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

NIAB(Cambridge)

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

NIH National Cancer Institute(Bethesda)

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

NIPGR

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

NRCC(Canada)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

NRCPB(New Delhi)

Bohra, A and Pandey, M K and Jha, U C and Singh, B and Singh, I P and Datta, D and Chaturvedi, S K and Nadarajan, N and Varshney, R K (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. pp. 1-29. ISSN 1432-2242

NRGene Ltd(Ness Ziona)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

NRGene Ltd., Ness Ziona , Israel

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Nagoya University(Nagoya)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Naliendele Agricultural Research Center, Tanzania Agricultural Research Institute, (Mtwara)

Akpo, E and Muricho, G and Lukurugu, G A and Opie, H and Ojiewo, C O and Varshney, R K (2020) Legume seed production for sustainable seed supply and crop productivity: case of groundnut in Tanzania and Uganda. Journal of Crop Improvement (TSI). pp. 1-22. ISSN 1542-7528

Nanchong Academy of Agricultural Sciences (Nanchong)

Zhao, J and Huang, L and Ren, X and Pandey, M K and Wu, B and Chen, Y and Zhou, X and Chen, W and Xia, Y and Li, Z and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2017) Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Frontiers in Plant Science, 8 (2105). pp. 1-13. ISSN 1664-462X

Nanjing Agricultural University(Nanjing)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Nanjing Forestry University(Nanjing)

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Nanjing Normal University (Nanjing)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Nanjing Normal University(Nanjing)

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Nanyang Technological University (Singapore)

Pazhamala, L T and Saxena, R K and Purohit, S and Bajaj, P and Kumar, V and Garg, V and Srikanth, S and Hingane, A J and Kulshreshtha, A and Krishnamurthy, L and Sameer Kumar, C V and Verdier, J and Varshney, R K (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

National Academy of Agricultural Sciences(New Delhi)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

National Agri-Food Biotechnology Institute (NABI) (Mohali)

Halder, U and Banerjee, A and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). pp. 1-2. ISSN 2169-8287

Banerjee, A and Halder, U and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2016) Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. Genome Announcements, 4 (6). pp. 1-2. ISSN 2169-8287

National Agricultural Research Organization (NARO) (Entebbe)

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

National Agricultural Research Organization (NARO), National Crop Resources Research Institute (NaCCRI) (Namulonge)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

National Agricultural Research Organization, National Semi-Arid Resources Research Institute, (Soroti)

Akpo, E and Muricho, G and Lukurugu, G A and Opie, H and Ojiewo, C O and Varshney, R K (2020) Legume seed production for sustainable seed supply and crop productivity: case of groundnut in Tanzania and Uganda. Journal of Crop Improvement (TSI). pp. 1-22. ISSN 1542-7528

National Agriculture and Food Research Organization (NARO), Institute of Crop Science (Tsukuba)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

National Agrobiodiversity Center of NAAS, RDA (Suwon)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

National Agrobiodiversity Center, National Academy of Agricultural Science(Suwon)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

National Bureau of Plant Genetic Resources (NBPGR) (New Delhi)

Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060

National Bureau of Plant Genetic Resources(New Delhi)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

Singh, R and Sharma, P and Varshney, R K and Sharma, S K and Singh, N K (2008) Chickpea Improvement: Role of Wild Species and Genetic Markers. Biotechnology & Genetic Engineering Reviews, 25. pp. 267-314.

National Center for Genome Resources (Santa Fe)

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

National Center for Genome Resources(Santa Fe)

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

National Center for Genome Resources, Santa Fe (New Mexico)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

National Center for Soybean Biotechnology and Division of Plant Sciences, University of Missouri (Columbia)

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

National Centre for Genome Resources(Santa Fe)

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

National Centre for Soybean Research, University of Missouri, Columbia

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

National Engineering Research Center for Information Technology in Agriculture, Beijing

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

National Foxtail Millet Improvement Center, Minor Cereal Crops Laboratory of Hebei Province, Institute of Millet Crops, Hebei Academy of Agriculture and Forestry Sciences (Shijiazhuang)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

National Institute for Agricultural and Food Research and Technology(Madrid)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

National Institute for Biotechnology and Genetic Engineering(Faisalabad)

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

National Institute for Plant Genome Research(New Delhi)

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

Varshney, R K and Hoisington, D A and Upadhyaya, H D and Gaur, P M and Nigam, S N and Saxena, K B and Vadez, V and Sethy, N K and Bhatia, S and Aruna, R and Gowda, M V C and Singh, N K (2007) Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics. In: Genomics-Assisted Crop Improvement Vol 2: Genomics Applications in Crops. Springer Netherlands, Springer Netherlands, Netherlands, pp. 207-241. ISBN 978-1-4020-6296-4

National Institute of Agricultural Botany, (Cambridge)

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

National Institute of Agrobiological Sciences (Japan)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

National Institute of Agrobiological Sciences (Tsukuba)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

National Institute of Crop Science (Suwon)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

National Institute of Nutrition (Hyderabad)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

National Institute of Plant Biotechnology (ICAR), Pusa, New Delhi

Baisakh, N and Sachdeva, S and Bharadwaj, C and Singh, R K and Jain, P K and Patil, B S and Roorkiwal, M and Varshney, R K (2020) Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 15 (7). pp. 1-25. ISSN 1932-6203

National Institute of Plant Genome Research (India)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

National Institute of Plant Genome Research (New Delhi)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322

National Institute of Plant Genome Research, New Delhi

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

National Institute of the Republic of Serbia (Maxim Gorki)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

National Key Laboratory for North China Crop Improvement and Regulation, Hebei Agriculture University, Baoding, Hebei, China

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, (Wuhan)

Li, S and Zhu, Y and Varshney, R K and Zhan, J and Zheng, X and Shi, J and Wang, X and Liu, G and Wang, H (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal (TSI), 18 (2). pp. 568-580. ISSN 1467-7644

Huang, L and Liu, X and Pandey, M K and Ren, X and Chen, H and Xue, X and Liu, N and Huai, D and Chen, Y and Zhou, X and Luo, H and Chen, W and Lei, Y and Liu, K and Xiao, Y and Varshney, R K and Liao, B and Jiang, H (2019) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal (TSI), 18 (3). pp. 779-790. ISSN 1467-7644

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China

Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752

National Pulses Research Center, Tamil Nadu Agricultural University (TNAU) (Pudukkottai)

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

National Pulses Research Center, Tamil Nadu Agricultural University (TNAU), (Pudukkottai)

Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X

Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203

National Research Center on Plant Biotechnology(New Delhi)

Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

National Research Centre on Plant Biotechnology(New Delhi)

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Raju, N K and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P J and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discoveryand marker development in pigeonpea(Cajanus cajan L.). BMC Plant Biology, 10. pp. 45-66. ISSN 14712229

Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

Varshney, R K and Hoisington, D A and Upadhyaya, H D and Gaur, P M and Nigam, S N and Saxena, K B and Vadez, V and Sethy, N K and Bhatia, S and Aruna, R and Gowda, M V C and Singh, N K (2007) Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics. In: Genomics-Assisted Crop Improvement Vol 2: Genomics Applications in Crops. Springer Netherlands, Springer Netherlands, Netherlands, pp. 207-241. ISBN 978-1-4020-6296-4

National Research Centre on Plant Biotechnology, IARI (New Delhi)

Deokar, A A and Kondawar, V and Kohli, D and Aslam, M and Jain, P K and Karuppayil, S M and Varshney, R K and Srinivasan, R (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46. ISSN (ISSN: 1438-793X, ESSN: 1438-7948)

National Research Council Canada (NRC-CNRC), Saskatchewan

Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203

National Rice Research Program (Hardinath)

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

National Semi‐Arid Resources Research Institute (NaSARRI) (Soroti)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

National University of Ireland Galway(Galway)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

National University of Sciences and Technology(Islamabad)

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

National University of Sciences(Dassa-Zoume)

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

Natural Capital and Plant Health, Royal Botanic Gardens Kew, Wakehurst Place, Ardingly (West Sussex)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Natural History Museum, London

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Nemours Hospital for Children, Wilmington

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

New Mexico State University Agricultural Science Center (Clovis)

Puppala, N and Xavier, A and Garg, V and Nayak, S N and Pandey, M K and Varshney, R K and Layland, N and Payton, P and Holbrook, C (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

New Mexico State University(Clovis)

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

New Mexico State University, Agricultural Science Center (Clovis)

Varshney, R K and Pandey, M K and Puppala, N (2017) Future Prospects for Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 165-169. ISBN 978-3-319-63933-8

New Mexico State University, Agricultural Science Center at Clovis, New Mexico

Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

New Mexico State University-Agricultural Science Center at Clovis, (New Mexico)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Nextomics Biosciences Institute (Wuhan)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Ngetta Zonal Agricultural Research and Development institute (Lira)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Nigde Omer Halisdemir University (Nigde)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Nigde Omer Halisdemir University(Nigde)

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

NordGen, Smedjevagen 3, 230 53 Alnarp, Sweden

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

North Carolina State University(Raleigh)

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

North China University of Science and Technology (Tangshan)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Northwest A&F University (Yangling)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Novogene Bioinformatics Institute(Beijing)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Novogene Bioinformatics Technology Co., Ltd, (Beijing)

Huang, L and Liu, X and Pandey, M K and Ren, X and Chen, H and Xue, X and Liu, N and Huai, D and Chen, Y and Zhou, X and Luo, H and Chen, W and Lei, Y and Liu, K and Xiao, Y and Varshney, R K and Liao, B and Jiang, H (2019) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal (TSI), 18 (3). pp. 779-790. ISSN 1467-7644

Oak Ridge National Laboratory (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Ohio State University(Wooste,)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Oil Crop Research Institute (OCRI), Chinese Academy of Agricultural Science (CAAS), Wuhan, China

Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Oil Crops Research Institute (OCRI) of Chinese Academy of Agricultural Sciences (CAAS) (Wuhan)

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Oil Crops Research Institute (OCRI) of Chinese Academy of Agricultural Sciences (CAAS), (Wuhan)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Oil Crops Research Institute (OCRI) of the Chinese Academy of Agricultural Sciences (Wuhan)

Vishwakarma, M K and Nayak, S N and Guo, B and Wan, L and Liao, B and Varshney, R K and Pandey, M K (2017) Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) (169). Springer, pp. 93-116. ISBN 978-3-319-63933-8

Oil Crops Research Institute (OCRI), Chinese Academy of Agricultural Sciences (CAAS) (Wuhan)

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Oil Crops Research Institute (OCRI), Chinese Academy of Agricultural Sciences (CAAS)(Wuhan)

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Oil Crops Research Institute (OCRI), Chinese Academy of Agricultural Sciences (CAAS), Wuhan, China

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Oil Crops Research Institute Chinese Academy of Agricultural Sciences (Wuhan)

Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X

Oil Crops Research Institute of Chinese Academy of Agricultural Sciences (OCRI-CAAS) (Wuhan)

Liao, B and Lei, Y and Jiang, H and Yan, L and Wan, L and Huang, L and Zhou, X and Luo, H and Chen, Y and Wang, H and Pandey, M K and Sudini, H and Upadhyaya, H D and Varshney, R K (2017) Management of aflatoxin contamination in groundnut by enhancing host-plant resistance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Oil Crops Research Institute of Chinese Academy of Agricultural Sciences (Wuhan)

Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Oil Crops Research Institute of Chinese Academy of Agricultural Sciences(Wuhan)

Huai, D and Xue, X and Wu, J and Pandey, M K and Liu, N and Huang, L and Yan, L and Chen, Y and Wang, X and Wang, Q and Kang, Y and Wang, Z and Jiang, H and Varshney, R K and Liao, B and Lei, Y (2024) Enhancing peanut nutritional quality by editing AhKCS genes lacking natural variation. Plant Biotechnology Journal. pp. 1-3. ISSN 1467-7644

Huai, D and Wu, J and Xue, X and Hu, M and Zhi, C and Pandey, M K and Liu, N and Huang, L and Bai, D and Yan, L and Chen, Y and Wang, X and Kang, Y and Wang, Z and Jiang, H and Lei, Y and Varshney, R K and Liao, B (2023) Red fluorescence protein (DsRed2) promotes the screening efficiency in peanut genetic transformation. Frontiers in Plant Science (TSI), 14. 01-11. ISSN 1664-462X

Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences (Wuhan)

Liu, N and Wu, B and Pandey, M K and Huang, L and Luo, H and Chen, Y and Zhou, X and Chen, W and Huai, D and Yu, B and Chen, H and Guo, J and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2022) Gene expression and DNA methylation altering lead to the high oil content in wild allotetraploid peanut (A. monticola). Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences(Wuhan)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Lu, Q and Liu, H and Hong, Y and Liang, X and Li, S and Liu, H and Li, H and Wang, R and Deng, Q and Jiang, H and Varshney, R K and Pandey, M K and Chen, X (2022) Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). Frontiers in Plant Science (TSI), 13. 01-11. ISSN 1664-462X

Wang, L and Yu, S and Tong, C and Zhao, Y and Liu, Y and Song, C and Zhang, Y and Zhang, X and Wang, Y and Hua, W and Li, D and Li, F and Yu, J and Xu, C and Han, X and Huang, S and Tai, S and Wang, J and Xu, X and Li, Y and Liu, S and Varshney, R K and Wang, J and Zhang, X (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (R39). pp. 1-13. ISSN 1465-6906

Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, (Wuhan)

Li, S and Zhu, Y and Varshney, R K and Zhan, J and Zheng, X and Shi, J and Wang, X and Liu, G and Wang, H (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal (TSI), 18 (2). pp. 568-580. ISSN 1467-7644

Oil Crops Research Institute(Wuhan)

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, China

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Oil Crops Research Institute, Fujian Agriculture and Forestry University, Fuzhou

Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

Oilseeds & Bioscience Consulting(Raleigh)

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Oilseeds Research Station, MPKV (Jalgaon)

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Oilseeds Research Station, Mahatma Phule Krishi Vidyapeeth (MPKV), Jalgaon

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

Oilseeds Section, School of Genetics and Plant Breeding, Tamil Nadu Agricultural University (TNAU) (Coimbatore)

Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452

Oklahoma State University (Stillwater)

Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452

Oklahoma State University, Department of Biochemistry and Molecular Biology (Stillwater)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Oklahoma State University, Stillwater (Oklahoma)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Osmania University (Hyderabad)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Somanaboina, A K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Development of transgenic tomato (Solanum lycoperscicum L.) by heterologous expression of osmotin-like protein (OLP) and chitinase (Chi11) genes for salt and drought stress tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kale, S M and Jaganathan, D and Roorkiwal, M and Thudi, M and Purushothaman, R and Praveenkumar, M and Krishnamurthy, L and Kavi Kishor, P B and Gaur, P M and Varshney, R K (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Palavalasa, H K and Narasu, L N and Varshney, R K and Kavi Kishor, P B (2017) Genome wide analysis of sodium transporters and expression of Na+/H+-antiporter-like protein (SbNHXLP) gene in tomato for salt tolerance. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Parupalli, S and Saxena, R K and Sameer Kumar, C V and Sharma, M and Singh, V K and Vechalapu, S and Kavi Kishor, P B and Saxena, K B and Varshney, R K (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244. ISSN 0970-6380

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

Osmania University(Hyderabad)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16. pp. 1-19. ISSN 1940-3372

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genesand diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16 (4). pp. 1-19. ISSN 1940-3372

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

Hiremath, P J and Kumar, A and Penmetsa, R V and et al, . (2012) Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal, 10 (6). pp. 716-732. ISSN 1467-7652

Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Jalaja, N (2011) Development of transgenics for fungal resistance and discovery of chemically induced mutations in Pearl Millet (Pennisetum glaucum L.) population by TILLING. PHD thesis, Osmania University.

Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.

Saxena, K B and Sultana, R and Saxena, R K and Kumar, R V and Sandhu, J S and Rathore, A and Kavi Kishor, P B and Varshney, R K (2011) Genetics of Fertility Restoration in A4-Based, Diverse Maturing Hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51. pp. 574-578. ISSN 0011-183X

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Saxena, R K (2010) Study of inheritance and identification of molecular markers for fertility restorers in pigeonpea [Cajanus cajan (L.) Millspaugh]. PHD thesis, International Crops Research Institute for the Semi-Arid Tropics .

Tatikonda, L and Wani, S P and Kannan, S and Beerelli, N and Sreedevi, T K and Hoisington, D A and Devi, P and Varshney, R K (2009) AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant. Plant Science, 176 (4). pp. 505-513.

Amrutha, R N and Sekhar, P N and Varshney, R K and Kishor, P B K (2007) Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.). Plant Science, 172 (4). pp. 708-721. ISSN 0168-9452

Sreenivasulu, N. and Varshney, R K and Kishore, P K and Weschke, W (2005) Functional Genomics for Tolerance to Abiotic Stress in Cereals. In: Cereal Genomics. Springer Netherlands, pp. 483-514. ISBN 978-1-4020-2359-0

Osmania University(Hyderabad)

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Ottawa University (Ottawa)

Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425

PAU (Ludhiana)

Bharadwaj, C and Patil, B S and Madan, P and Manu, B and Tapan, K and Neeraj, K and Philanim, S and Soren, K R and Jain, P K and Supriya, S and Nazish, N and Shruti, R and Sarvjeet, S and Tripathi, S and Hegde, V S and Varshney, R K and Chauhan, S K (2017) Breeding chickpea for water limited environments: selection indices and strategies. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

PAU(Ludhiana)

Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060

PJTSAU (Hyderabad)

Sameer Kumar, C V and Hingane, A J and Shruthi, H B and Sharma, M and Sudhakar, C and Nagesh Kumar, M V and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P (2017) Hybrid pigeonpea: best bet for maximizing productivity in dry lands. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pairwise Plants LLC, Durham

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Palacký University(Olomouc)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Doležalová, A and Sládeková, L and Šimoníková, D and Holušová, K and Karafiátová, M and Varshney, R K and Doležel, J and Hřibová, E (2022) Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting Fluorescence in situ Hybridization. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Panjab University (Chandigarh)

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

Panjabrao Deshmukh Krishi Vidyapeeth(Akola)

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Peanut Company of Australia (PCA), Kingaroy, Australia

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Peanut Research Center, Crops Research Institute, Guangdong Academy of Agricultural Sciences (Guangzhou)

Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X

Peanut Research Institute, Shandong Academy of Agricultural Sciences (Qingdao)

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

Penn State University (PA)

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Penn State University(PA)

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Phoenix Bioinformatics, Redwood City (California)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Pigeonpea Breeding, ICAR-IIPR (Kanpur)

Sameer Kumar, C V and Satheesh Naik, S J and Mohan, N and Saxena, R K and Varshney, R K (2017) Botanical Description of Pigeonpea [Cajanus Cajan (L.) Millsp.]. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 17-29. ISBN 978-3-319-63795-2

Pioneer Hi-Bred Private Limited (Hyderabad)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Plant BioSystems Division, Department of Agricultural, Food and Nutritional Science, University of Alberta (Edmonton)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Plant Biotechnology Center, Central Institute of Temperate Horticulture (CITH) (Srinagar)

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

Plant Breeding Institute, Faculty of Agriculture and Environment, The University of Sydney (Narrabri)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca

Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372

Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Plant Genetic Resources Conservation Unit, US Department of Agriculture–Agricultural Research Service (Griffin)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Plant Genetics Research Unit, Donald Danforth Plant Science Center, US Department of Agriculture, Agricultural Research Service, Midwest Area (St. Louis)

Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X

Plant Genetics Resources Conservation Unit, US Department of Agriculture-Agricultural Research Service (Griffin)

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

Plant Genome Mapping Laboratory, University of Georgia (Athens)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, USA

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Plant Genomics Center (Brazil)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Plant Genomics and Breeding Center, Eliseu Maciel School of Agriculture, Federal University of Pelotas (Pelotas)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Plant Genomics and Breeding Institute, Seoul National University (Seoul)

Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644

Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621

Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Plant Genomics and Breeding Research Institute, Seoul National University (Seoul)

Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621

Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, (Melbourne)

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, Melbourne, VIC, Australia

Khan, A W and Garg, V and Roorkiwal, M and Golicz, A A and Edwards, D and Varshney, R K (2020) Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement. Trends in Plant Science (TSI), 25 (2). pp. 148-158. ISSN 1360-1385

Plant Molecular and Cellular Biology Program, Genetic Institute, University of Florida (Gainesville)

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Plant Pathology, Jawahar Lal Nehru Krishi Vishwa Vidyalaya (JNKVV) (Jabalpur)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Plant Physiology Lab, Organisms and Systems Biology, Faculty of Biology, University of Oviedo, Oviedo, Spain,

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Plant Science Program Research and Development, MARS Chocolate North America (Hackettstown)

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Plant Stress Biology, International Centre for Genetic Engineering and Biotechnology (New Delhi)

Bohra, A and Pareek, S and Jha, R and Saxena, R K and Singh, I P and Pandey, G and Mishra, R K and Singh, F and Kaashyap, M and Joshi, R and Varshney, R K (2017) Modern Genomic Tools for Pigeonpea Improvement: Status and Prospects. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 41-54. ISBN 978-3-319-63795-2

Plant and Crop Sciences Division, School of Biosciences, University of Nottingham (Loughborough)

Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640

Plant and Environmental Sciences, Poole Agricultural Center, Clemson University, Clemson, SC, United States

Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X

Polish Academy of Sciences(Poznan)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Polytechnic University of Marche(Ancona)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Premas Life Sciences, Bengaluru, India

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Professor Jayashankar Telangana State Agricultural University (Hyderabad)

Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sameer Kumar, C V and Singh, I P and Vijay Kumar, R and Patil, S B and Tathineni, R and Mula, M G and Saxena, R K and Hingane, A J and Rathore, A and Ravinder Reddy, CH and Nagesh Kumar, M and Sudhakar, C and Varshney, R K (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). 08-10. ISSN 2340-1559

Professor Jayashankar Telangana State Agricultural University (PJTSAU), Rajendranagar, Hyderabad, Telangana State

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

Professor Jayashankar Telangana State Agricultural University (Rajendranagar)

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Professor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, C V S and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports (TSI), 10 (1). pp. 1-17. ISSN 2045-2322

Professor Jayashankar Telangana State Agricultural University, Rajendranagar, Hyderabad, Telangana

Saxena, R K and Kale, S and Mir, R R and Mallikarjuna, N and Yadav, P and Das, R R and Molla, J and Sonnappa, M and Ghanta, A and Narasimhan, Y and Rathore, A and Kumar, C V S and Varshney, R K (2019) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics (TSI), 133 (3). pp. 737-749. ISSN 0040-5752

Professor Jayashankar Telangana State Agricultural University-RARS, Palem

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

Professor Jayashankar Telangana State Agricultural University-RARS, Warangal

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

Professor JayashankarTelangana State Agricultural University (Hyderabad)

Sameer Kumar, C V and Nagesh Kumar, M V and Sudhakar, C and Saxena, R K and Varshney, R K (2015) Crop specific traits of Pigeonpea [Cajanus cajan (L.) Millspaugh) and their implications in seed production. In: 8th National Seed Congress, October 27-29, 2015, Hyderabad.

Punjab Agricultural University (Ludhiana)

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Punjab Agricultural University(Ludhiana)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372

Kim, D H and Kaashyap, M and Rathore, A and Das, R A and Parupalli, S and Upadhyaya, H D and Gopalakrishnan, S and Gaur, P M and Singh, S and Kaur, J and Yasin, M and Varshney, R K (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 1-5. ISSN 0250-5991

Saxena, K B and Sultana, R and Saxena, R K and Kumar, R V and Sandhu, J S and Rathore, A and Kavi Kishor, P B and Varshney, R K (2011) Genetics of Fertility Restoration in A4-Based, Diverse Maturing Hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51. pp. 574-578. ISSN 0011-183X

Bhardwaj, R and Sandhu, J S and Varshney, R K and Gaur, P M and Kaur, L and Vikal, Y (2011) Synteny relationships among the linkage groups of chickpea (Cicer arietinum L.). Journal of Food Legumes, 24 (2). pp. 91-95.

Bhardwaj, R and Sandhu, J S and Kaur, L and Gupta, S K and Gaur, P M and Varshney, R K (2010) Genetics of ascochyta blight resistance in chickpea. Euphytica, 171 (3). pp. 337-343. ISSN 1573-5060

Punjab Agricultural University, Ludhiana

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Punjab Agricultural University, Ludhiana, Punjab

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

Purdue University(Indiana)

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Purdue University(West Lafayette)

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Qingdao Agricultural University(Qingdao )

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Qingdao Agricultural University(Qingdao)

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Qinghai Academy of Agricultural and Forestry Sciences (Xining)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Qinghai University (Xining)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Queensland Alliance for Agriculture and Food Innovation, Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Queensland Alliance for Agriculture and Food Innovation, The University of Queensland (Brisbane)

Godwin, I D and Rutkoski, J and Varshney, R K and Hickey, L T (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics (TSI), 132 (3). pp. 555-557. ISSN 0040-5752

Queensland University of Technology (Brisbane)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

RAK College of Agriculture (Sehore)

Sajja, S and Samineni, S and Gadekar, M and Jayalakshmi, V and Vijayakumar, A and Yasin, M and Varshney, R K (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

RAK College of Agriculture(Sehore)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Kim, D H and Kaashyap, M and Rathore, A and Das, R A and Parupalli, S and Upadhyaya, H D and Gopalakrishnan, S and Gaur, P M and Singh, S and Kaur, J and Yasin, M and Varshney, R K (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 1-5. ISSN 0250-5991

RAU-Agricultural Research Station(Durgapura)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

RK University(Rajkot)

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

RMIT University(Melbourne)

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

RMIT University, Melbourne, VIC 3000, Australia

Bohra, A and Pareek, S and Jones, M and Jha, U C and Naik, S J S and Kaashyap, M and Patil, P G and Maurya, A K and Saxena, R K and Varshney, R K (2019) Genomic Interventions to Improve Resilience of Pigeonpea in Changing Climate. In: Genomic Designing of Climate-Smart Pulse Crops. Springer Nature, Switzerland, pp. 107-134. ISBN 978-3-319-96931-2

RVSKVV(Sehore)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

RVSKVV-RAK College of Agriculture (Sehore)

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Rafi Amhad Kidwai (RAK) College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (RVSKV) (Sehore)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

Rajasthan Agricultural Research Institute (Durgapura)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Rajasthan Agricultural Research Institute(Durgapura)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Rajendra Prasad Central Agricultural University (Pusa)

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (Gwalior)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya (RVSKVV), RAK College of Agriculture (RAKCA), Sehore , Madhya Pradesh

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya(Gwalior)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Rani Lakshmi Bai Central Agricultural University (Jhansi)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Rani Lakshmi Bai Central Agricultural University(Jhansi)

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Rani Lakshmi Bai Central Agricultural University(Uttar Pradesh)

Babele, P K and Kudapa, H and Singh, Y and Varshney, R K and Kumar, A (2022) Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Rani Lakshmi Bai Central Agricultural University, Jhansi, India

Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203

Rauh Clemson University(Clemson)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Regional Agricultural Research Station (Nandyal)

Sajja, S and Samineni, S and Gadekar, M and Jayalakshmi, V and Vijayakumar, A and Yasin, M and Varshney, R K (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Samineni, S and Varshney, R K and Sajja, S and Thudi, M and Jayalakshmi, V and Vijayakumar, A and Mannur, D M (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559

Regional Agricultural Research Station (RARS), Acharya NG Ranga Agricultural University (ANGRAU), (Tirupati)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Regional Agricultural Research Station(Kurnool)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Regional Agricultural Research Station, Achariya NG Ranga Agricultural University, Tirupati,Andhra Pradesh

Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Regional Agricultural Research Station, Acharya NG Ranga Agricultural University (ANGRAU) (Tirupati)

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452

Regional Agricultural Research Station, Acharya NG Ranga Agricultural University (ANGRAU), (Tirupati)

Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203

Regional Agricultural Research Station, Acharya NG Ranga Agricultural University, Tirupati

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Regional Agricultural Research Station, Lam Farm, Guntur, Andhra Pradesh

Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395

Regional Agricultural Research Station, Professor Jayashanker Telangana State Agricultural University, Palem

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Regional Agricultural Research Station, Professor Jayashanker Telangana State Agricultural University, Warangal

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Regional Agricultural Research Station, University of Agricultural Sciences, Kalaburagi, Karnataka

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Regional Agriculture Research Station, NARC (Bara)

Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322

Reno Pontarollo Genome Prairie(Saskatoon)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Research Institute for Agriculture and Life Sciences, Seoul National University (Seoul)

Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652

Research Policy Bureau, R&D Performance Evaluation & Management Division (Wansan-gu)

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Rice Breeding Platform, International Rice Research Institute (Los Banos)

Godwin, I D and Rutkoski, J and Varshney, R K and Hickey, L T (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics (TSI), 132 (3). pp. 555-557. ISSN 0040-5752

Rice Research Institute, Guangdong Academy of Agricultural Sciences, (Guangzhou)

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

Rice University (Houston)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Rothamsted Research, Harpenden, United Kingdom

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Royal Botanic Gardens, Kew, Richmond, Surrey

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Royal Holloway University of London(Surrey)

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

S.R.T.M. University(Dnyanteerth)

Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).

SDA ARS, Crop Protection and Management Research Unit(Tifton)

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

SKUAST-Kashmir (Budgam)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

SKUAST-Kashmir (Shuhama)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

SKUAST-Kashmir (Sopore)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

SKUAST-Kashmir(Kashmir)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

SPRI(Qingdao)

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

SRUC (Scotland’s Rural College), Peter Wilson Building (Edinburgh)

Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266

SRUC, West Mains Road, Kings Buildings, Edinburgh

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Sabanci University

Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.

Sam Higginbottom University of Agriculture, Technology and Sciences (SHUATS) (Allahabad)

Paul, P J and Samineni, S and Sajja, S and Rathore, A and Das, R R and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica (TSI), 214(2) (27). pp. 1-27. ISSN 0014-2336

Sandra Knapp Natural History Museum(London)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Saurashtra University (Rajkot)

Dodia, S M and Joshi, B and Gangurde, S S and Thirumalaisamy, P P and Mishra, G P and Narandrakumar, D and Soni, P and Rathnakumar, A L and Dobaria, J R and Sangh, C and Chitikineni, A and Chanda, S V and Pandey, M K and Varshney, R K and Thankappan, R (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics (TSI), 132 (4). pp. 1001-1016. ISSN 0040-5752

Savanah Agricultural Research Institute (SARI) (Tamale)

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Savannah Agricultural Research Institute (SARI) (Tamale)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Desmae, H and Ntare, B and Motagi, B N and Falalou, H and Upadhyaya, H D and Oteng-Frimpong, R and Sako, D and Echekwu, C and Miningou, A and Monyo, E and Varshney, R K (2017) Advances in groundnut breeding for drought prone West and Central Africa. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal (Pietermaritzburg)

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, V and Sameer Kumar, C V and Tongoona, P and Sibiya, J and Saxena, K B and Varshney, R K (2017) Molecular mapping of seed protein content in pigeonpea – a drought tolerant crop of the semi-arid tropics. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

School of Agriculture and Environment & Institute of Agriculture, The University of Western Australia (Crawley)

Roorkiwal, M and Jain, A and Kale, S M and Doddamani, D and Chitikineni, A and Thudi, M and Varshney, R K (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal. pp. 1-12. ISSN 14677644

School of Agriculture and Environment and Institute of Agriculture, University of Western Australia (Crawley)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

School of Agriculture and Environment, The University of Western Australia (Crawley)

Garg, V and Agarwal, G and Pazhamala, L T and Nayak, S N and Kudapa, H and Khan, A W and Doddamani, D and Sharma, M and Kavi Kishor, P B and Varshney, R K (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Frontiers in Plant Science, 8 (488). pp. 1-16. ISSN 1664-462X

School of Agriculture and Environment, The University of Western Australia (Perth)

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

School of Agriculture and Environment, University of Western Australia (Crawley)

Shasidhar, Y and Vishwakarma, M K and Pandey, M K and Janila, P and Variath, M T and Manohar, S S and Nigam, S N and Guo, B and Varshney, R K (2017) Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (794). pp. 1-14. ISSN 1664-462X

School of Agriculture and Food Sciences, The University of Queensland (Brisbane)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

School of Agriculture and Food Sciences, University of Queensland (Brisbane)

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

School of Agriculture and Food Sciences, University of Queensland, St Lucia (Queensland)

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

School of Agriculture and the Melbourne School of Engineering, University of Melbourne, Australia

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

School of Agriculture, Food and Wine, The University of Adelaide (Adelaide)

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

School of Agriculture, Food and Wine, University of Adelaide, Waite Campus (Glen Osmond)

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

School of Agriculture, Food and Wine, University of Adelaide,Glen Osmond

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

School of Agriculture, Forestry and Food Engineering, Yibin University (Yibin)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

School of Applied Sciences, Health Innovations Research Institute, RMIT University (Melbourne)

Bohra, A and Pareek, S and Jha, R and Saxena, R K and Singh, I P and Pandey, G and Mishra, R K and Singh, F and Kaashyap, M and Joshi, R and Varshney, R K (2017) Modern Genomic Tools for Pigeonpea Improvement: Status and Prospects. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 41-54. ISBN 978-3-319-63795-2

School of Applied Sciences, RMIT University (Victoria)

Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322

School of Bioinformatics and Biotechnology, D.Y. Patil University (Mumbai)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

School of Biological Sciences and Inst. of Agriculture, The Univ. of Western Australia, Crawley, WA, Australia

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

School of Biological Sciences and Institute of Agriculture, The University of Western Australia, (Perth)

Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644

School of Biological Sciences, The University of Western Australia (Crawley)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

School of Biological Sciences, The University of Western Australia (Perth)

Khan, A W and Thudi, M and Varshney, R K and Edwards, D (2017) Sequencing the Chickpea Genome. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-123. ISBN 978-3-319-66115-5

School of Biological Sciences, The University of Western Australia (UWA), Crawley, WA, Australia

Khan, A W and Garg, V and Roorkiwal, M and Golicz, A A and Edwards, D and Varshney, R K (2020) Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement. Trends in Plant Science (TSI), 25 (2). pp. 148-158. ISSN 1360-1385

School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

School of Biological Sciences, The University of Western Australia, Perth

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

School of Biosciences, University of Birmingham (Birmingham)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

School of Biotechnology and Bioinformatics, D.Y. Patil University (Navi Mumbai)

Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737

School of Computational & Integrative Sciences, Jawaharlal Nehru University (New Delhi)

Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322

School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

School of Integrative Plant Science, Cornell University (Ithaca)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

School of Life Science, TsingHua University (Beijing)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

School of Life Sciences and Center for Genomics and Computational Biology, North China University of Science and Technology (Tangshan)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

School of Life Sciences and Center for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong (Shatin)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

School of Life Sciences, Sun Yat-Sen University (Guangzhou)

Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X

School of Life Sciences, Swami Ramanand Teerth Marathwada University (Nanded)

Deokar, A A and Kondawar, V and Kohli, D and Aslam, M and Jain, P K and Karuppayil, S M and Varshney, R K and Srinivasan, R (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46. ISSN (ISSN: 1438-793X, ESSN: 1438-7948)

School of Life Sciences, The Chinese University of Hong Kong (Shatin)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

School of Life Sciences, University of Hyderabad, Hyderabad, India

Gopalakrishnan, S and Thakur, V and Saxena, R K and Vadlamudi, S and Purohit, S and Kumar, V and Rathore, A and Chitikineni, A and Varshney, R K (2020) Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

School of Life Sciences/Center for Genomics and Bio-computing, North China University of Science and Technology, Tangshan, Hebei, China

Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

School of Medicine and Pharmacology, Royal Perth Hospital Unit, The University of Western Australia (Perth)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

School of Molecular Science, The University of Western Australia (Perth)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

School of Natural Sciences, Environmental Futures Research Institute, Griffith University (Queensland)

Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322

School of Natural Sciences, Environmental Futures Research Institute, Gri�th University, Brisbane

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

School of Plant Biology and Institute of Agriculture, The Univ. of Western Australia (Crawley)

Sinha, P and Saxena, K B and Saxena, R K and Singh, V K and Suryanarayana, V and Sameer Kumar, C V and Katta, M A V S and Khan, A W and Varshney, R K (2015) Association of Gene with Cytoplasmic Male Sterility in Pigeonpea. The Plant Genome, 8 (2). pp. 1-12. ISSN 1940-3372

School of Plant Biology and Institute of Agriculture, The University of Western Australia (Crawley)

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322

Thudi, M and Gaur, P M and Krishnamurthy, L and Samineni, S and Varshney, R K (2017) Enhancing drought tolerance in chickpea using genomics approaches. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kaoneka, S R and Saxena, R K and Singh, V K and Sameer Kumar, C V and Shimelis, H A and Varshney, R K (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pazhamala, L T and Saxena, R K and Purohit, S and Bajaj, P and Kumar, V and Garg, V and Srikanth, S and Hingane, A J and Kulshreshtha, A and Krishnamurthy, L and Sameer Kumar, C V and Verdier, J and Varshney, R K (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644

Parupalli, S and Saxena, R K and Sameer Kumar, C V and Sharma, M and Singh, V K and Vechalapu, S and Kavi Kishor, P B and Saxena, K B and Varshney, R K (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244. ISSN 0970-6380

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Pazhamala, L T and Agarwal, G and Bajaj, P and Kumar, V and Kulshreshtha, A and Saxena, R K and Varshney, R K (2016) Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLOS ONE, 11 (10). 01-17. ISSN 1932-6203

Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

Kumar, V and Khan, A W and Saxena, R K and Garg, V and Varshney, R K (2016) First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (08). pp. 1673-1681. ISSN 1467-7652

Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644

Ramalingam, A and Kudapa, H and Pazhamala, L T and Garg, V and Varshney, R K (2015) Gene Expression and Yeast Two-Hybrid Studies of 1R-MYB Transcription Factor Mediating Drought Stress Response in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 (1117). 01-10. ISSN 1664-462X

Ramalingam, A and Kudapa, H and Pazhamala, L T and Weckwerth, W and Varshney, R K (2015) Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Frontiers in Plant Science, 6 (1116). 01-21. ISSN 1664-462X

Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X

Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X

Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060

School of Plant Biology and Institute of Agriculture, The University of Western Australia (Perth)

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

Sinha, P and Saxena, R K and Singh, V K and Krishnamurthy, L and Varshney, R K (2015) Selection and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) under Heat and Salt Stress Conditions. Frontiers in Plant Science, 6 (1071). 01-10. ISSN 1664-462X

School of Plant Biology and Institute of Agriculture, The University of Western, Australia, Crawley, WA, Australia

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

School of Plant Biology and Institute of Agriculture, University of Western Australia (Crawley)

Pazhamala, L T and Purohit, S and Saxena, R K and Garg, V and Krishnamurthy, L and Verdier, J and Varshney, R K (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054. ISSN 0022-0957

School of Plant Biology and Institute of Agriculture, University of Western Australia (Perth)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

School of Plant Biology and Institute of AgricultureThe University of Western Australia (Crawley)

Saxena, R K and Patel, K and Sameer Kumar, C V and Tyagi, K and Saxena, K B and Varshney, R K (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics (TSI). pp. 1-10. ISSN 0040-5752

School of Plant Biology and UWA Institute of Agriculture, The University of Western Australia (Crawley)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

School of Plant Biology and the Institute of Agriculture, The University of Western Australia (Crawley)

Roorkiwal, M and Thudi, M and Gaur, P M and Upadhyaya, H D and Singh, N P and Varshney, R K (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives (7). pp. 7-9. ISSN 2340-1559

School of Plant Biology and the Institute of Agriculture, The University of Western Australia (Perth)

Sinha, P and Pazhamala, L T and Singh, V K and Saxena, R K and Krishnamurthy, L and Azam, S and Khan, A W and Varshney, R K (2016) Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 06 (1065). 01-10. ISSN 1664-462X

School of Plant Biology and the Institute of Agriculture, The University of Western Australia (UWA) (Crawley)

Roorkiwal, M and Jarquin, D and Jain, A and Garg, V and Kale, S M and Singh, M K and Samineni, S and Gaur, P M and Rathore, A and Chellapilla, B and Tripathi, S and Crossa, J and Varshney, R K (2017) Genomic-enabled prediction model with genotype × environment interaction in elite chickpea lines. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

School of Plant Biology, Faculty of Science, The University of Western Australia (Perth)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

School of Plant Biology, The Institute of Agriculture, University of Western Australia, University of Western Australia (Crawley)

Lu, Q and Li, H and Hong, Y and Zhang, G and Wen, S and Li, X and Zhou, G and Li, S and Liu, H and Liu, H and Liu, Z and Varshney, R K and Chen, X and Liang, X (2018) Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). Frontiers in Plant Science (TSI), 9 (604). pp. 1-15. ISSN 1664-462X

School of Plant Biology, The University of Western Australia (Crawley)

Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

School of Plant Biology, The University of Western Australia (Perth)

Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

School of Plant Biology, University of Western Australia (Crawley)

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

School of Science, The Pangenomics Group, RMIT University (Melbourne)

Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322

Scotland’s Rural College (SRUC), (Edinburgh)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

Scottish Crop Research Institute

Rostoks, N and Ramsay, L and MacKenzie, K and Cardle, L and Bhat, P R and Roose, M L and Svensson, J T and Stein, N and Varshney, R K and Marshall, D F and Graner, A and Close, T J and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661. ISSN 1091-6490

Scottish Crop Research Institute(Dundee)

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

Section of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

SeedWorks International Pvt Ltd, Hyderabad

Yadav, O P and Gupta, S K and Govindaraj, M and Sharma, R and Varshney, R K and Srivastava, R K and Rathore, A and Mahala, R S (2021) Genetic Gains in Pearl Millet in India: Insights Into Historic Breeding Strategies and Future Perspective. Frontiers in Plant Science, 12 (645038). pp. 1-15. ISSN 1664-462X

Selian Agricultural Research Institute (Arusha)

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Senegalese Agricultural Research Institute (Dakar)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Seoul National University (Seoul)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322

Seoul National University(Seoul)

Kim, D H and Parupalli, S and Azam, S and Lee, S H and Varshney, R K (2013) Comparative sequence analysis of nitrogen fixation-related genes in six legumes. Frontiers in Plant Science, 4 (300). pp. 1-8.

ShanDong Shofine Seed Technology Co Ltd (Shandong)

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

Shandong Academy of Agricultural Sciences (Jinan)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651

Shandong Academy of Agricultural Sciences (Ji’nan)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Shandong Academy of Agricultural Sciences (Qingdao)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Shandong Academy of Agricultural Sciences / Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology (Jinan)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Shandong Academy of Agricultural Sciences(Qingdao)

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Shandong Academy of Agricultural Sciences, Biotechnology Research Center (Jinan)

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Shandong Academy of Agricultural Sciences, Biotechnology Research Center, (Jinan)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Shandong Academy of Agricultural Sciences, Jinan

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Shandong Academy of Agricultural Sciences, Peanut Research Institute, (Qingdao)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Shandong Normal University (Jinan)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Shandong Normal University (Ji’nan)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Shandong Peanut Research Institute (Qingdao)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Guo, B and Khera, P and Wang, H and Peng, Z and Sudini, H and Wang, X and Osiru, M and Chen, J and Vadez, V and Yuan, M and Wang, C T and Zhang, X and Waliyar, F and Wang, J and Varshney, R K (2016) Annotation of Trait Loci on Integrated Genetic Maps of Arachis Species. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 163-207. ISBN 978-1630670382

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Shandong Peanut Research Institute (SPRI), Qingdao, China

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Shandong Peanut Research Institute(Qingdao)

Wang, H and Penmetsa, R V and Yuan, M and Varshney, R K and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-3. ISSN 1471-2229

Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences (Qingdao)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

Shandong Shofine Seed Company (Jiaxiang)

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Shanghai Center for Plant Stress Biology, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

Shanghai Igenebank Biotechnology Company Limited (Shanghai)

Zhao, J and Huang, L and Ren, X and Pandey, M K and Wu, B and Chen, Y and Zhou, X and Chen, W and Xia, Y and Li, Z and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2017) Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Frontiers in Plant Science, 8 (2105). pp. 1-13. ISSN 1664-462X

Shanghai Institute for Advanced Immunochemical Studies (ShanghaiTech)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Shanxi Agricultural University(Taiyuan)

Huai, D and Wu, J and Xue, X and Hu, M and Zhi, C and Pandey, M K and Liu, N and Huang, L and Bai, D and Yan, L and Chen, Y and Wang, X and Kang, Y and Wang, Z and Jiang, H and Lei, Y and Varshney, R K and Liao, B (2023) Red fluorescence protein (DsRed2) promotes the screening efficiency in peanut genetic transformation. Frontiers in Plant Science (TSI), 14. 01-11. ISSN 1664-462X

Shenzhen Key Laboratory for Orchid Conservation and Utilization, National Orchid Conservation Center of China and Orchid Conservation and Research Center of Shenzhen (Shenzhen)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Lu, Q and Li, H and Hong, Y and Zhang, G and Wen, S and Li, X and Zhou, G and Li, S and Liu, H and Liu, H and Liu, Z and Varshney, R K and Chen, X and Liang, X (2018) Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). Frontiers in Plant Science (TSI), 9 (604). pp. 1-15. ISSN 1664-462X

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Shenzhen Millennium Genomics, Inc. (Shenzhen)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Sher-E-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K), Wadura Campus, Sopore, Kashmir

Saxena, R K and Kale, S and Mir, R R and Mallikarjuna, N and Yadav, P and Das, R R and Molla, J and Sonnappa, M and Ghanta, A and Narasimhan, Y and Rathore, A and Kumar, C V S and Varshney, R K (2019) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics (TSI), 133 (3). pp. 737-749. ISSN 0040-5752

Sher-e-Kashmir University of Agricultural Science and Technology(Kashmir)

Kulwal, P L and Mir, R R and Varshney, R K (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal, 20. pp. 1021-1030. ISSN 1467-7652

Sher-e-Kashmir University of Agricultural Sciences & Technology (SKUAST) (Kashmir)

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Sher-e-Kashmir University of Agricultural Sciences & Technology of Kashmir(Jammu & Kashmir)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (Khudwani)

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir(Srinagar)

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Sher-e-Kashmir University of Agricultural Sciences and Technology(Srinagar)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Siberian Branch of the Russian Academy of Sciences

Varshney, R K and Beier, U and Khlestkina, K E and Kota, R and Korzun, V and Graner, A and Borner, A (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. TAG Theoretical and Applied Genetics, 114. pp. 1105-1116.

Sichuan Academy of Agricultural Sciences (Chengdu)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Sichuan Agricultural University(Chengdu)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Sinana Agricultural Research Ceneter (Robe)

Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506

Sitaram Bhartia Institute of Science and Research(New Delhi)

Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640

Skolkovo Institute of Science and Technology (Moscow)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Society for Health and Demographic Surveillance (Suri)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

South Asia Hub, International Rice Research Institute (IRRI), Hyderabad

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

South Australian Research And Development Institute (Adelaide)

Ruperao, P and Bayer, P and Kenneth Chan, C K and Hayashi, S and Roorkiwal, M and Chitikineni, A and Sutton, T and Batley, J and Varshney, R K and Edwards, D (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

South Australian Research and Development Institute (Adelaide)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

South Australian Research and Development Institute(Hartley Grove)

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

South China Agricultural University (Guangzhou)

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

South China Peanut Sub-Center of National Center of Oilseed Crops Improvement(Guangzhou)

Lu, Q and Liu, H and Hong, Y and Liang, X and Li, S and Liu, H and Li, H and Wang, R and Deng, Q and Jiang, H and Varshney, R K and Pandey, M K and Chen, X (2022) Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). Frontiers in Plant Science (TSI), 13. 01-11. ISSN 1664-462X

South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (Guangzhou)

Lu, Q and Li, H and Hong, Y and Zhang, G and Wen, S and Li, X and Zhou, G and Li, S and Liu, H and Liu, H and Liu, Z and Varshney, R K and Chen, X and Liang, X (2018) Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). Frontiers in Plant Science (TSI), 9 (604). pp. 1-15. ISSN 1664-462X

South China Peanut Sub-center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS) (Guangzhou)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

South China University of Technology(Guangzhou)

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Southern Cross Plant Science, Southern Cross University (Lismore)

Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811

Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Nanchang, China

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

Soybean Genomics and Improvement Lab, US Department of Agriculture – Agricultural Research Service, Beltsville, MD, USA

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Sreenidhi Institute of Science and Technology (Hyderabad)

Jacob, S and Sajjalaguddam, R R and Kumar, K V K and Varshney, R K and Sudini, H (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology. pp. 1-9. ISSN 1610-739X

Sri Karan Narendra Agriculture University (SKNAU), (Durgapura)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

St. John’s Medical College(Bengaluru)

Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640

State Agricultural Biotechnology Centre Centre for Crop and Food Innovation, Murdoch University, Murdoch

Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762

State Agricultural Biotechnology Centre, Centre for Crop & Food Innovation, Food Futures Institute, Murdoch University, Murdoch

Srivastava, R K and Yadav, O P and Kaliamoorthy, S and Gupta, S K and Serba, D D and Choudhary, S and Govindaraj, M and Kholová, J and Murugesan, T and Satyavathi, C T and Gumma, M K and Singh, R B and Bollam, S and Gupta, R and Varshney, R K (2022) Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects. Frontiers in Plant Science (TSI), 13. pp. 1-20. ISSN 1664-462X

State Agricultural Biotechnology Centre, Centre for Crop Research Innovation, Murdoch University, Murdoch

Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409

State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, Murdoch

Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385

Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818

Parmar, S and Deshmukh, D B and Kumar, R and Manohar, S S and Joshi, P and Sharma, V and Chaudhari, S and Variath, M T and Gangurde, S S and Bohar, R and Singam, P and Varshney, R K and Janila, P and Pandey, M K (2021) Single Seed-Based High-Throughput Genotyping and Rapid Generation Advancement for Accelerated Groundnut Genetics and Breeding Research. Agronomy (TSI), 11 (6). pp. 1-15. ISSN 2073-4395

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Yadav, O P and Gupta, S K and Govindaraj, M and Sharma, R and Varshney, R K and Srivastava, R K and Rathore, A and Mahala, R S (2021) Genetic Gains in Pearl Millet in India: Insights Into Historic Breeding Strategies and Future Perspective. Frontiers in Plant Science, 12 (645038). pp. 1-15. ISSN 1664-462X

State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch University, Murdoch

Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X

State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch University, Murdoch, Western Australia, Australia

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

State Agricultural Biotechnology Centre, Crop & Food Innovation Centre, Food Futures Institute, Murdoch University (Murdoch)

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

State Agricultural Biotechnology Centre, Crop Research Innovation Centre, Food Futures Institute, Murdoch University, Murdoch

Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372

State Agricultural Biotechnology Ctr., Crop Research Innovation Ctr., Food Futures Inst., Murdoch Univ., Murdoch

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

State Key Laboratory of Agricultural Genomics (BGI-Shenzhen)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

State Key Laboratory of Agricultural Genomics (Shenzhen)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

State Key Laboratory of Agricultural Genomics, China National GeneBank, BGI-Shenzhen, Shenzhen

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan crops, Fujian Agriculture and Forestry University, Fuzhou (Fujian)

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S B and Varshney, R K and Zhuang, W J (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Science (CAAS), Hangzhou

Raza, A and Tabassum, J and Kudapa, H and Varshney, R K (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology (TSI). pp. 1-24. ISSN 0738-8551

State Level Biotechnology Centre, Mahatma Phule Agricultural University (Rahuri)

Jadhav, A A and Rayate, S J and Mhase, L B and Thudi, M and Chitikineni, A and Harer, P N and Jadhav, A S and Varshney, R K and Kulwal, P L (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics. ISSN 0973-7731

Statiunea de Cercetare Dezvoltare Pentru Legumicultura(Bacau)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Stockbridge School of Agriculture, University of Massachusetts Amherst (Amherst)

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Suri District Hospital (Suri)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Sustainable Intensification Innovation Lab, Kansas State University (Manhattan)

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Swedish University of Agricultural Sciences (Sweden)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

Swedish University of Agricultural Sciences (Uppsala)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Swinburne University of Technology(Hawthorn)

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Syngenta Seeds Inc

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

TARI, Maruku (Bukoba)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

TARI, Naliendele (Mtwara)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

TARI, Uyole (Mbeya)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Tamil Nadu Agricultural University (Aliyarnagar)

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Tamil Nadu Agricultural University (Coimbatore)

Janila, P and Pandey, M K and Manohar, S S and Variath, M T and Nallathambi, P and Nadaf, H L and Sudini, H and Varshney, R K (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (03). pp. 355-366. ISSN 1439-0523

Tamil Nadu Agricultural University (TNAU) (Coimbatore)

Janila, P and Radhakrishnan, T and Murali, T V and Bera, S K and Dobariya, K L and Nigam, S N and Varshney, R K and Pandey, M K and Manohar, S S and Manivannan, N and Vasanthi, R P (2018) High oleic peanuts for Asia and Africa to meet the needs of the food processing industries. In: Science Forum 2018, October 10 - 12, 2018, Stellenbosch, South Africa.

Tamil Nadu Agricultural University (TNAU), Aliyarnagar

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

Tamil Nadu Agricultural University (TNAU), Coimbatore

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

Tamil Nadu Agricultural University(Madurai)

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Varshney, R K and Parzies, H K (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435. ISSN 1573-5060

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Parzies, H K and Bharathi, A and Varshney, R K and Gowda, C L L (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223. ISSN 1479-2621

Tamil Nadu Agricultural University, Coimbatore,Tamil Nadu

Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Tamworth Agricultural Institute(Calala)

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

Tanzania Agricultural Research Institute (TARI) (Arusha)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Tanzania Agricultural Research Institute(Dodoma)

Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440

Tanzania Agricultural Research Institute, Dodoma

Akpo, E and Bakari, H and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Comparative advantage of newly-released varieties of groundnut in Tanzania. [Policy Briefs]

Tanzania Agricultural Research Institute, Dodoma, Tanzania

Ndossi, J and Akpo, E and Ojiewo, C O and Ringo, J and Kongola, E and Vernooy, R and Muricho, G and Lukurugu, G A and Makoye, L N and Tabo, R and Varshney, R K (2021) Delineating investment opportunities for stakeholders in sorghum seed systems: a logit model perspective. Agriculture & Food Security (TSI), 10 (1). pp. 1-13. ISSN 2048-7010

Akpo, A and Mwalongo, S and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Policy options for enhancing quality groundnut seed production and delivery systems in Tanzania. [Policy Briefs]

Kimbi, T G and Akpo, E and Kongola, E and Ojiewo, C O and Vernooy, R and Muricho, G and Ringo, J and Lukurugu, G A and Varshney, R K and Tabo, R (2020) A probit Analysis of Determinants of Adoption of Improved Sorghum Technologies Among Farmers in Tanzania. Journal of Agricultural Science (TSI), 13 (1). pp. 73-87. ISSN 1916-9752

Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395

Tanzania Agricultural Research Institute-Naliendele, Mtwara, Tanzania

Daudi, H and Shimelis, H and Mathew, I and Oteng‐Frimpong, R and Ojiewo, C and Varshney, R K (2020) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

Tata Consultancy Services(Hyderabad)

Jayashree, B and Hanspal, M S and Srinivasan, R and Vigneshwaran, R and Varshney, R K and Spurthi, N and Eshwar, K and Ramesh, N and Chandra, S and Hoisington, D A (2007) An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms. Comparative and Functional Genomics (35604). pp. 1-7. ISSN 1531-6912

Technical University of Munich

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Technische Universitaet Muenchen, Plant Biodiversity Research (Freising)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

Texas A & M AgriLife Research, (Lubbock)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Texas A&M AgriLife Research (Lubbock)

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Texas A&M University

Azhaguvel, P and Saraswathi, D V and Sharma, A and Varshney, R K (2006) Methodological Advancement in Molecular Markers to Delimit the Gene(s) for Crop Improvement. In: Floriculture, ornamental and plant biotechnology. Global Science Books, Isleworth, UK, pp. 460-469. ISBN 4-903313-00-X

The Agricultural Genome Center, National Academy of Agricultural Science, Rural Development Administration (Suwon)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

The Broad Institute (Cambridge)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

The Chinese University of Hong Kong (Hong Kong)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

The Department of Agriculture and Food, Western Australia (South Perth)

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

The Department of Primary Industries and Regional Development, South Perth (Western Australia)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

The Huck Institute of the Life Sciences, The Pennsylvania State University, University Park, PA

Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644

The Institut d' Economie Rural (IER) (Kayes)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

The Institut de l'Environnement et de Recherches Agricoles (INERA) (Ouagadougou)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

The Institute of Agriculture, The University of Western Australia (Crawley)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

The Institute of Agriculture, University of Western Australia (Crawley)

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

The International Institute of Tropical Agriculture (IITA) (Ibadan)

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

The International Institute of Tropical Agriculture, Ibadan,

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

The James Hutton Institute, Errol Road, Invergowrie, Dundee

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

The John Bingham Laboratory (UK)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

The John Bingham Laboratory, Lawrence Weaver Road, Cambridge

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

The John Bingham Laboratory, NIAB (Cambridge)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

The Leibniz Institute of Plant Genetics and Crop Plant Research (Gatersleben)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) (Germany)

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

The Leibniz Institute of Plant Genetics and Crop Plant Research, (Gatersleben)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

The Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr.,Seeland

Saxena, R K and Kale, S and Mir, R R and Mallikarjuna, N and Yadav, P and Das, R R and Molla, J and Sonnappa, M and Ghanta, A and Narasimhan, Y and Rathore, A and Kumar, C V S and Varshney, R K (2019) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics (TSI), 133 (3). pp. 737-749. ISSN 0040-5752

The Leibniz-Institute of Plant Genetics and Crop Plant Research(Gatersleben)

Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372

The National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences (Beijing)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

The Ohio State University (Columbus)

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

The Pangenomics Group, School of Science, RMIT University, Melbourne 3083, Australia

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus (Glen Osmond)

Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322

The Queensland Alliance for Agriculture and Food Innovation, The University of Queensland (Brisbane)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh (Easter Bush)

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh (Midlothian)

Jenko, J and Gorjanc, G and Cleveland, M A and Varshney, R K and Whitelaw, C B A and Woolliams, J A and Hickey, J M (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (55). pp. 1-34. ISSN 0999-193X

The Roslin Institute and Royal(Dick) School of Veterinary Studies,The University of Edinburgh (Easter Bush)

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

The Roslin Institute, The University of Edinburgh, Edinburgh, Scotland

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

The Sainsbury Laboratory

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

The Sainsbury Laboratory, Norwich Research Park, Norwich, UK

Varshney, R K and Godwin, I D and Mohapatra, T and Jones, J D G and McCouch, S R (2019) A SWEET solution to rice blight. Nature Biotechnology (TSI), 37 (11). pp. 1280-1282. ISSN 1087-0156

The Samuel Roberts Noble Foundation

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

The UWA Institute of Agriculture and School of Agriculture and Environment, The University of Western Australia (Perth)

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

The UWA Institute of Agriculture, The University of Western Australia (Crawley)

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

The UWA Institute of Agriculture, The University of Western Australia (Perth)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

The UWA Institute of Agriculture, The University of Western Australia, Perth

Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X

Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Raza, A and Tabassum, J and Kudapa, H and Varshney, R K (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology (TSI). pp. 1-24. ISSN 0738-8551

Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472

Bohra, A and Chand Jha, U and Godwin, I D and Varshney, R K (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal (TSI). pp. 1-18. ISSN 1467-7644

The UWA Institute of Agriculture, The University ofWestern Australia, Perth

Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067

The UWA Institute of Agriculture, Unitversity of Western Australia, Perth

Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336

The UWA Institute of Agriculture, University of Western Australia (Perth)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Paul, P J and Samineni, S and Sajja, S and Rathore, A and Das, R R and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica (TSI), 214(2) (27). pp. 1-27. ISSN 0014-2336

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 (1140). pp. 1-10. ISSN 1664-462X

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular mapping of flowering time genes in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Gaur, P M and Singh, M K and Samineni, S and Sajja, S and Jukanti, A K and Kamatam, S and Varshney, R K (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209. pp. 253-260. ISSN 1573-5060

The UWA Institute of Agriculture, University of Western Australia, Perth

Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336

The University of Adelaide, (Adelaide)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

The University of Burdwan (Burdwan)

Majhi, K and Let, M and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. Environmental Research (TSI), 223. ISSN 0013-9351

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

The University of Burdwan(Burdwan)

Dutta, B and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Delving into the lifestyle of Sundarban Wetland resident, biofilm producing, halotolerant Salinicoccus roseus: a comparative genomics-based intervention. BMC Genomics (TSI), 24. pp. 1-15. ISSN 1471-2164

The University of Burdwan(West Bengal)

Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology. ISSN 1432-2056

Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology, 47. pp. 115-133. ISSN 0722-4060

Kabiraj, A and Halder, U and Panja, A S and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Detailed genomic and biochemical characterization and plant growth promoting properties of an arsenic-tolerant isolate of Bacillus pacificus from contaminated groundwater of West Bengal, India. Biocatalysis and Agricultural Biotechnology (TSI), 52. ISSN 1878-8181

Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437

The University of Florida, Department of Agronomy (Gainesville)

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

The University of Georgia (Athens)

Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

The University of Georgia (Athens, GA)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Guo, B and Liu, X and Ozias-Akins, P and Zhang , X and Liao, B and Varshney, R K and Nwosu, V and Wilson, R F and Stalker, H T (2013) The Peanut Genome Consortium and Peanut Genome Sequence: Creating a better future through global food security. In: 2013 APS-MSA Joint Meeting, 10-14 August 2013, Austin, Texas USA.

Khera, P and Upadhyaya, H D and Pandey, M K and Roorkiwal, M and Sriswathi, M and Janila, P and Guo, Y and McKain, M R and Nagy, E D and Knapp, S J and Leebens-Mack, J and Conner, J A and Ozias-Akins, P and Varshney, R K (2013) Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays. The Plant Genome, 6 (3). pp. 1-11. ISSN 1940-3372

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Varshney, R K and et al, . (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Upadhyaya, H D and Varshney, R K and Hoisington, D A and et al, . (2006) Genotyping composite collection of finger millet [Eleusine coracana (L.) Gaertn]. In: Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

The University of Georgia Tifton Campus(Tifton)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

The University of Georgia(Athens)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

The University of Georgia, College of Agricultural and Environmental Sciences (Athens)

Varshney, R K and Saxena, R K and Jackson, S A (2017) Future Prospects. In: The Pigeonpea Genome. Part of the Compendium of Plant Genomes book series (CPG) . Springer, pp. 99-104. ISBN 978-3-319-63795-2

The University of Georgia, Department of Plant Pathology (Tifton)

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

The University of Queensland (Queensland)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

The University of Queensland(Brisbane)

Akinlade, O J and Voss-Fels, K and Costilla, R and Kholova, J and Choudhary, S and Varshney, R K and Hickey, L T and Smith, M R (2022) Designing chickpea for a hotter drier world. Euphytica, 218. pp. 1-16. ISSN 1573-5060

The University of Queensland(St Lucia)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, St. Lucia,, Australia

Saxena, K B and Saxena, R K and Hickey, L T and Varshney, R K (2019) Can a speed breeding approach accelerate genetic gain in pigeonpea? Euphytica (TSI), 215 (12). pp. 1-7. ISSN 0014-2336

The University of Sydney(Camperdown)

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

The University of Vermont (UVM)(Burlington)

Saxena, K B and Saxena, R K and Sharma, S and Sameer Kumar, C V and Sultana, R and von Wettberg, E B and Varshney, R K (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica (TSI), 214 (12). pp. 1-20. ISSN 0014-2336

The University of Western Australia (Crawley)

Vishwakarma, M K and Kale, S M and Sriswathi, M and Naresh, T and Shasidhar, Y and Garg, V and Pandey, M K and Varshney, R K (2017) Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis. Frontiers in Plant Science, 8 (2064). pp. 1-13. ISSN 1664-462X

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Kale, S M and Jaganathan, D and Roorkiwal, M and Thudi, M and Purushothaman, R and Praveenkumar, M and Krishnamurthy, L and Kavi Kishor, P B and Gaur, P M and Varshney, R K (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X

Katta, M A V S K and Khan, A W and Doddamani, D and Thudi, M and Varshney, R K (2015) NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data. PLOS One, 10 (10). pp. 1-9. ISSN 1932-6203

Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452

Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

The University of Western Australia (Perth)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

The University of Western Australia (UWA) (Crawley)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Thudi, M and Khan, A W and Kumar, V and Gaur, P M and Katta, K and Garg, V and Roorkiwal, M and Samineni, S and Varshney, R K (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (10). pp. 53-64. ISSN 1471-2229

The University of Western Australia (UWA) (Perth)

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

The University of Western Australia Institute of Agriculture, The University of Western Australia (Crawley)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

The University of Western Australia(Crawley)

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Krishnamurthy, L and Turner, N C and Gaur, P M and Upadhyaya, H D and Varshney, R K and Siddique, K H M and Vadez, V (2011) Consistent Variation across Soil Types in Salinity Resistance of a Diverse Range of Chickpea (Cicer arietinum L.) Genotypes. Journal Of Agronomy And Crop Science, 197 (3). pp. 214-227.

Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266

Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799

Flowers, T J and Gaur, P M and Gowda, C L L and Krishnamurthy, L and Samineni, S and Siddique, K H M and Turner, N C and Vadez, V and Varshney, R K and Colmer, T D (2010) Salt sensitivity in chickpea. Plant, Cell and Environment , 33 (4). pp. 490-509. ISSN 0140-7791

Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164

Vadez, V and Krishnamurthy, L and Serraj, R and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K and Turner, N C and Siddique, K H M (2007) Large variation in salinity tolerance in chickpea is explained by differences in sensitivity at the reproductive stage. Field Crops Research, 104 (1-3). pp. 123-129. ISSN 0378-4290

The University of Western Australia(Perth)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

The University of Western Australia, School of Plant Biology and the Institute of Agriculture (Crawley)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Tomooka National Institute of Agrobiological Sciences(Tsukuba)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Tuskegee Univ(Tuskegee)

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Tuskegee University

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Tuskegee University (Tuskegee)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Tuskegee University(Tuskegee )

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Tuskegee University(Tuskegee)

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Varshney, R K and et al, . (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

U.S. Dep. of Agriculture–Agricultural Research Service, Soybean Genomics and Improvement Lab., Beltsville

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

U.S. Department of Agriculture (Pullman)

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) Future Prospects for Chickpea Research. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-142. ISBN 978-3-319-66115-5

U.S. Department of Agriculture, Washington State University (Pullman)

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-66115-5

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome: An Introduction. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-66115-5

UAE University(Al Ain)

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

UAS-Dharwad Regional Agricultural Research Station (Bijapur)

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

UAS-Dharwad Regional Agricultural Research Station (Vijayapura)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

UAS-Raichur Agricultural Research Station (Gulbarga)

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

UAS-Raichur Agricultural Research Station (Kalaburagi)

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

UCB

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

UCB(Brasila)

Upadhyaya, H D and Valls, J F M and Bertolli, D and et al, . (2006) Molecular characterization of groundnut (Arachis hypogaea L.) composite collection. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.

UCL Genetics Institute, Gower Street, London

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

UGC-Center of Advanced Study, Department of Botany, The University of Burdwan (Burdwan)

Halder, U and Banerjee, A and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). pp. 1-2. ISSN 2169-8287

UMR AGAP(Montpellier Cedex)

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

US Department of Agriculture-Agricultural Research Service, Crop Genetics and Breeding Research Unit (Tifton)

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

US Department of Agriculture-Agricultural Research Service, Crop Protection and Management Research Unit (Tifton)

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

US Department of Agriculture-Agricultural Research Service, Plant Genetic Resources Conservation Unit (Griffin)

Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156

USDA FSIS OFO, Dallas

Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

USDA(Beltsville)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

USDA-ARS

Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.

Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.

USDA-ARS (Tifton)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

USDA-ARS Biosciences Research Lab(Fargo)

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

USDA-ARS Crop Protection and Management Research Unit (CPMRU), Tifton, GA, USA

Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

USDA-ARS Crop Protection and Management Research Unit (Tifton)

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Fountain, J C and Bajaj, P and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Scully, B T and Kemerait, R C and Varshney, R K and Guo, B (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

USDA-ARS Hard Winter Wheat Genetics Research Unit (Manhattan)

Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322

USDA-ARS National Laboratory for Genetic Resources Preservation, 1111 South Mason St, Fort Collins, CO

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

USDA-ARS PGRCU (Griffin)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

USDA-ARS US Horticultural Research Laboratory (Fort Pierce)

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

USDA-ARS(Ames)

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

USDA-ARS(Pullman)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

USDA-ARS(Tifton)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

Pandey, M K and Guo, B and Holbrook, C C and Janila, P and Zhang, X and Bertioli, D J and Isobe, S and Liang, S and Varshney, R K (2014) Molecular Markers, Genetic Maps, and QTLs for Molecular Breeding in Peanut. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 79-113. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

USDA-ARS, Cereal Disease Laboratory, University of Minnesota (St Paul)

Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164

USDA-ARS, Crop Genetics and Breeding Research Unit (Tifton)

Puppala, N and Xavier, A and Garg, V and Nayak, S N and Pandey, M K and Varshney, R K and Layland, N and Payton, P and Holbrook, C (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

USDA-ARS, Crop Genetics and Breeding Research Unit, (Tifton)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

USDA-ARS, Crop Genetics and Breeding Research Unit, Tifton, USA

Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067

USDA-ARS, Crop Protection and Management Research Unit (Tifton)

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Divya, C and Gaurav, A and Hui, W and Pandey, M K and Culbreath, A K and Varshney, R K and Guo, B (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144. ISSN 0250-5371

Vishwakarma, M K and Nayak, S N and Guo, B and Wan, L and Liao, B and Varshney, R K and Pandey, M K (2017) Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) (169). Springer, pp. 93-116. ISBN 978-3-319-63933-8

Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

USDA-ARS, Crop Protection and Management Research Unit, (Tifton)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

USDA-ARS, Crop Protection and Management Research Unit, Tifton

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

USDA-ARS, Cropping Systems Research Laboratory (Lubbock)

Puppala, N and Xavier, A and Garg, V and Nayak, S N and Pandey, M K and Varshney, R K and Layland, N and Payton, P and Holbrook, C (2017) Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

USDA-ARS, Cropping Systems Research Laboratory, Lubbock

Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

USDA-ARS, Genomics and Bioinformatics Research Unit, Stoneville

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

USDA-ARS, Inst. for Genomic Diversity, Dep. Plant Breeding & Genetics, Cornell University (Ithaca)

Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372

USDA-ARS, Ithaca (New York)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

USDA-ARS, National Peanut Research Laboratory, Dawson

Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

USDA-ARS, Prosser (Washington)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

USDA-ARS, Southern Regional Research Center, New Orleans

Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836

USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

USDA-ARS, U.S. Horticultural Research Laboratory (Ft. Pierce)

Fountain, J C and Bajaj, P and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Scully, B T and Kemerait, R C and Varshney, R K and Guo, B (2017) Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavus to oxidative stress are related to stress tolerance and aflatoxin production capability. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

USDA-ARS, US Horticultural Laboratory (Fort Pierce)

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

USDA-ARS, WSU Pullman (Washington)

Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

USDA-ARS, Western Regional Plant Introduction Station, Washington State University (Pullman)

Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X

USDA-ARS-CSRL, (Lubbock)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

USDA-Agricultural Research Service(Tifton)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

USDA-Agricultural Research Services(Tifton)

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

USDA‐ARS, Subtropical Horticultural Research Station (Florida)

Dillon, N and Kuhn, D and Innes, D and Bally, I and Varshney, R K (2015) Mango Genomics. In: Tropical Agriculture Conference 2015: Meeting the Productivity Challenge in the Tropics, November 16 - 18, 2015, Brisbane Convention & Exhibition Centre, Australia.

USDA‑ARS, Washington State University (Pullman)

Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752

USDA–ARS

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

UWA Institute of Agriculture, The University of Western Australia (Crawley)

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

UWA Institute of Agriculture, University of Western Australia (Crawley)

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

UWA School of Agriculture and Environment, The University of Western Australia (Crawley)

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

UWA(Crawley)

Bohra, A and Pandey, M K and Jha, U C and Singh, B and Singh, I P and Datta, D and Chaturvedi, S K and Nadarajan, N and Varshney, R K (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. pp. 1-29. ISSN 1432-2242

Ulrich Schurr Forschungszentrum Jülich(Jülich)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

United Arab Emirates University (Al-Ain)

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

United Arab Emirates University(Abu Dhabi)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

United Arab Emirates University(Al Ain)

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

United Arab Emirates University(Al-Ain)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

United Nations University (Tokyo)

Kashiwagi, J and Krishnamurthy, L and Purushothaman, R and Upadhyaya, H D and Gaur, P M and Gowda, C L L and Ito, O and Varshney, R K (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 (-). pp. 47-54. ISSN 1872-6852

United States Department of Agriculture (USDA) (Washington)

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

United States Department of Agriculture – Agricultural Research Service, Crop Protection and Management Research Unit (Tifton)

Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X

United States Department of Agriculture, Agricultural Research Service Crop Protection and Management Research Unit (Tifton)

Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X

United States Department of Agriculture-Agricultural Research Service(Ames)

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

United States Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY

Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372

United States Department of Agriculture-Agriculture Research Service (ARS), Edward T. Schafer Agricultural Research Center, Fargo

Srivastava, R K and Yadav, O P and Kaliamoorthy, S and Gupta, S K and Serba, D D and Choudhary, S and Govindaraj, M and Kholová, J and Murugesan, T and Satyavathi, C T and Gumma, M K and Singh, R B and Bollam, S and Gupta, R and Varshney, R K (2022) Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects. Frontiers in Plant Science (TSI), 13. pp. 1-20. ISSN 1664-462X

United States Department of Agriculture-Agriculture Research Service (ARS), U.S. Arid Land Agricultural Research Center, Maricopa

Srivastava, R K and Yadav, O P and Kaliamoorthy, S and Gupta, S K and Serba, D D and Choudhary, S and Govindaraj, M and Kholová, J and Murugesan, T and Satyavathi, C T and Gumma, M K and Singh, R B and Bollam, S and Gupta, R and Varshney, R K (2022) Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects. Frontiers in Plant Science (TSI), 13. pp. 1-20. ISSN 1664-462X

United States Department of Agriculture—Agricultural Research Service (USDA-ARS) (Tifton)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Univ. de Colima(Colima)

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Univ. de Guadalajara(Guadalajara)

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Universidad Autónoma de Chapingo(Texcoco)

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Universidad de Colima(Colima)

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Universidad de Quintana Roo (Quintana Roo)

Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385

Universidade Cato´lica de Brası´lia(Brası´lia)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Universidade Católica de Brasília (UCB) (Brasília)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Universidade Católica de Brasília(Brasília)

Varshney, R K and et al, . (2008) SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Universidade de Brasília (Brasilia)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

Universidade de Brası´lia(Brasilia)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

University College London(London)

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

University Laval (Quebec)

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

University Ouaga (Ouagadougou)

Zongo, A and Khera, P and Sawadogo, M and Shasidhar, Y and Sriswathi, M and Vishwakarma, M K and Sankara, P and Ntare, B R and Varshney, R K and Pandey, M K and Desmae, H (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15. pp. 132-137. ISSN 2215017X

University for Development Studies(Tamale)

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

University of Abomey-Calavi(Abomey-Calavi)

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

University of Adelaide

Varshney, R K and Langridge, P and Graner, A (2007) Application of Genomics to Molecular Breeding of Wheat and Barley. In: Advances in Genetics. Elsevier, Amsterdam, UK, pp. 121-155. ISBN 978-0-12-374621-4

University of Adelaide (Glen Osmond)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

University of Adelaide(Adelaide)

Varshney, R K and Grosse, I and Hahnel, U and Siefken, R and Prasad, M and Stein, N and Langridge, P and Altschmied, L and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. TAG Theoretical and Applied Genetics, 113 (2). pp. 239-250. ISSN 1432-2242

University of Adelaide(Glen Osmond)

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

University of Adelaide(Glenosmond)

Varshney, R K and Balyan, H S and Langridge, P (2006) Wheat. In: Cereals and Millets. Genome Mapping and Molecular Breeding in Plants, 1 . Springer-Verlag , Berlin, Heidelberg, Germany, pp. 79-134. ISBN 978-3-540-34031-7

University of Adelaide(Urrbrae)

Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752

University of Adelaide, Australia and School of Agriculture (Adelaide)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

University of Agricultural Makurdi (Makurdi)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

University of Agricultural Science (Dharwad)

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

University of Agricultural Sciences (Dharwad)

Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X

Rathna Kumar, A L and Thirumalaisamy, P P and Narendrakumar, - and Lalwani, H B and Nadaf, H L and Nagaraju, P and Yenagi, B and Patil, S and Suryawanshi, J and Deshmukh, M P and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Premalatha, N and Sundaravadana, S and Variath, M T and Pandey, M K and Varshney, R K and Janila, P (2017) Molecular breeding tools improved drought tolerant groundnut variety for resistance to foliar fungal diseases. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Janila, P and Pandey, M K and Manohar, S S and Variath, M T and Nallathambi, P and Nadaf, H L and Sudini, H and Varshney, R K (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (03). pp. 355-366. ISSN 1439-0523

Kolekar, R M and Sujay, V and Shirasawa, K and Sukruth, M and Khedikar, Y P and Gowda, M V C and Pandey, M K and Varshney, R K and Bhat, R S (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156. ISSN 0014-2336

Sajja, S and Samineni, S and Gadekar, M and Jayalakshmi, V and Vijayakumar, A and Yasin, M and Varshney, R K (2015) Effect of post-emergence herbicide imazethapyr on phenological and agronomic traits in chickpea breeding lines. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Samineni, S and Varshney, R K and Sajja, S and Thudi, M and Jayalakshmi, V and Vijayakumar, A and Mannur, D M (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Sukruth, M and Paratwagh, S A and Sujay, V and Kumari, V and Gowda, M V C and Nadaf, H L and Motagi, B N and Lingaraju, S and Pandey, M K and Varshney, R K and Bhat, R S (2015) Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica, 204 (2). pp. 343-351. ISSN 0014-2334

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752

University of Agricultural Sciences (Raichur)

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular mapping of flowering time genes in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

University of Agricultural Sciences (UAS) (Dharwad)

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2010) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 121 (05). pp. 971-984. ISSN 1432-2242

University of Agricultural Sciences (UAS), (Dharwad)

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

University of Agricultural Sciences (UAS), (Raichur)

Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

University of Agricultural Sciences (UAS), Dharwad

Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336

University of Agricultural Sciences (UAS), Dharwad, India

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

University of Agricultural Sciences (UAS)-Dharwad, Dharwad

Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

University of Agricultural Sciences and Technology of Jammu(Jammu)

Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752

University of Agricultural Sciences(Bangalore)

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.

Gnanesh, B N (2010) Generation of Expressed Sequence Tags and Marker Development for Sterility Mosaic Disease Resistance in Pigeonpea. PHD thesis, University of Agricultural Sciences, Bangalore.

Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).

Raju, N K and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P J and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discoveryand marker development in pigeonpea(Cajanus cajan L.). BMC Plant Biology, 10. pp. 45-66. ISSN 14712229

University of Agricultural Sciences(Dharwad)

Pandey, M K and Gangurde, S S and Shasidhar, Y and Sharma, V and Kale, S M and Khan, A W and Shah, P and Joshi, P and Bhat, R S and Janila, P and Bera, S K and Varshney, R K (2024) High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut. BMC Plant Biology (TSI), 24. pp. 1-16. ISSN 1471-2229

Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X

Tayade, A T and Motagi, B N and Jadhav, M P and Nadaf, A S and Koti, R V and Gangurde, S S and Sharma, V and Varshney, R K and Pandey, M K and Bhat, R S (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218. pp. 1-10. ISSN 1573-5060

Jadhav, M P and Patil, M D and Hampannavar, M and Venkatesh, - and Dattatreya, P and Shirasawa, K and Janila, P and Pandey, M K and Varshney, R K and Bhat, R S (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker-assisted backcross breeding. Crop Science (TSI), 61 (4). pp. 2435-2443. ISSN 0011-183X

Varshney, R K and Pandey, M K and Janila, P and Nigam, S N and Sudini, H and Gowda, M V C and Sriswathi, M and Radhakrishnan, T and Manohar, S S and Nagesh, P (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781. ISSN 0040-5752

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

Sujay, V and Gowda, M V C and Pandey, M K and Bhat, R S and Khedikar, Y P and Nadaf, H L and Gautami, B and Sarvamangala, C and Lingaraju, S and Radhakrishan, T and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788. ISSN 1572-9788

Gowda, M V C and Bhat, R S and Sujay, V and Kusuma, P and Kumari, Varsha and Varshney, R K and Bhat, S (2011) Characterization of AhMITE1 transposition and its association with the mutational and evolutionary origin of botanical types in peanut (Arachis spp.). Plant Systematics and Evolution, 291 (3-4). pp. 153-158.

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Sarvamangala, C (2009) Construction of Genetic Linkagemap and QTL Analysis for Foliar Disease Resistance, Nutritional Quality and Productivity Traits in Groundnut (Arachis hypogaea L). PHD thesis, University of Agricultural Sciences, Dharwad.

Khedikar, Y P and Patgar, K V and Gowda, M C V and Upadhyaya, H D and Varshney, R K (2008) Construction of a genetic linkage map and QTL analysis for late leaf spot and rust in groundnut (Arachis hypogaea L.). In: 3rd International Conference for Peanut Genomics and Biotechnology on Advances in Arachis through Genomics and Biotechnology, 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Gowda, M V C and Khedikar, Y P and Kusuma, V P and Sujay, V and Bhat, S and Upadhyaya, H D and Varshney, R K (2008) Genetic enhancement of resistance to foliar diseases. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT Patancheru, Andhra Padesh, India.

Khedikar, Y P (2008) Molecular tagging and mapping of resistance to late leaf spot and rust in groundnut (Arachis hypogaea L.). PHD thesis, University of Agricultural Sciences.

Varshney, R K and Hoisington, D A and Upadhyaya, H D and Gaur, P M and Nigam, S N and Saxena, K B and Vadez, V and Sethy, N K and Bhatia, S and Aruna, R and Gowda, M V C and Singh, N K (2007) Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics. In: Genomics-Assisted Crop Improvement Vol 2: Genomics Applications in Crops. Springer Netherlands, Springer Netherlands, Netherlands, pp. 207-241. ISBN 978-1-4020-6296-4

University of Agricultural Sciences(Raichur)

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

University of Agricultural Sciences, ARS-Gulbarga (Raichur)

Saxena, R K and Singh, V and Rathore, A and Yu, O and Kim, C and Kumar, V and Patel, K and Khan, A W and Tyagi, K and An, S and Seon, D and Kuruvinashetti, M S and Kim, J and BellbullKim, - and Zhang, W and Sameer Kumar, C V and Muniswamy, S and Saxena, K B and Reif, J C and Varshney, R K (2017) Towards defining heterotic pools for accelerating hybrid breeding in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

University of Agricultural Sciences, Dharwad, India

Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

University of Agricultural Sciences, Raichur, Karnataka

Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336

University of Agricultural Sciences–Bangalore (Bangalore)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

University of Agriculture (Faisalabad)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

University of Agriculture (Makurdi)

Motagi, B N and Ajeigbe, H A and Echekwu, C and Mohammed, S G and Adnan, A A and Omoigui, L O and Desmae, H M and Monyo, E and Okori, P and Janila, P and Upadhyaya, H D and Varshney, R K and Tabo, R (2015) Evaluation of multiple stress tolerant groundnut genotypes for productivity and nutritional quality in Nigeria. In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

University of Agriculture Faisalabad (Faisalabad)

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

University of Agriculture(Faisalabad)

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

University of Alabama in Huntsville (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of Arizona (AZ)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

University of Arizona (Tucson)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

University of Arizona(Tucson)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

University of Basilicata(Potenza)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

University of Birmingham(Edgbaston)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

University of Bologna (Bologna)

Varshney, R K and Tuberosa, R (2007) Genomics-Assisted Crop Improvement, Vol 1: Genomics Approaches and Platforms. Springer, Netherlands. ISBN 978-1-4020-6294-0

Varshney, R K and Tuberosa, R (2007) Genomics-Assisted Crop Improvement, Vol 2: Genomics Applications in Crops. Springer. ISBN 978-1-4020-6296-4

University of Bologna(Viale Fanin )

Varshney, R K and Tuberosa, R (2007) Genomics-assisted crop improvement: An overview. In: Genomics-Assisted Crop Improvement. Springer Verlag, Dordrecht, The Netherlands, pp. 1-12. ISBN 978-1-4020-6294-0

University of Brasilia(Brasilia)

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

University of Brasília

Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.

University of Brasília(Brasilla)

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

University of Brasília(Brasília)

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

University of Brasília(Brazil)

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

University of Brasília, Institute of Biological Sciences, Campus Darcy Ribeiro (Brasília)

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

University of British Columbia

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

University of British Columbia, 3083 Alma St, Vancouver

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

University of Calcutta (Kolkata)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

University of California (Davis)

Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752

University of California (UCR)(Riverside)

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

University of California (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of California Davis(California)

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Kassa, M T and Penmetsa, R V and Carrasquilla-Garcia, N and et al, . (2012) Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives. PLoS ONE, 7 (6). pp. 1-13. ISSN 1932-6203

University of California Davis(Davis)

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

University of California Riverside (Riverside)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

University of California(Davis)

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

Saxena, R K and Penmetsa, R V and Upadhyaya, H D and Kumar, Ashish and Varshney, R K and et al, . (2012) Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes. DNA Research. pp. 1-13. ISSN 1756-1663

Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242

Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Varshney, R K and et al, . (2011) Towards Integrating Genomics in Breeding in Groundnut (Arachis hypogaea L.). In: Plant & Animal Genome XIX Conference, 15-19 Jan 2011 , San Diego, USA.

Cook, D R and Varshney, R K (2010) From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology, 13 (2). pp. 115-118.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

University of California(Davis)

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

University of California(Davis, CA)

Wang, H and Penmetsa, R V and Yuan, M and Varshney, R K and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-3. ISSN 1471-2229

University of California(Riverside )

Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266

University of California(Riverside)

Saxena, R K and Cui, X and Thakur, V and Walter, B and Close, T J and Varshney, R K (2011) Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.). Functional & Integrative Genomics, 11 (4). pp. 651-657.

Rostoks, N and Ramsay, L and MacKenzie, K and Cardle, L and Bhat, P R and Roose, M L and Svensson, J T and Stein, N and Varshney, R K and Marshall, D F and Graner, A and Close, T J and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661. ISSN 1091-6490

University of California, Riverside, CA

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

University of California-Davis (Davis)

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

University of California-Davis(UC-Davis)

Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266

University of California–Davis (Davis)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

University of Chinese Academy of Sciences (Beijing)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

University of Connecticut(Storrs)

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

University of Copenhagen(Copenhagen)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

University of Copenhagen(Denmark)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

University of Copenhagen(Frederiksberg)

Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164

University of Cordoba(Cordoba)

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

University of Crete(Heraklion)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

University of Córdoba (Córdoba)

Ali, L and Madrid, E and Varshney, R K and Azam, S and Millan, T and Rubio, J and Gill, J (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488. ISSN 0040-5752

University of Córdoba (Spain)

Millan, T and Madrid, E and Varshney, R K (2014) Genomic resources in chickpea. Legume Perspectives (3). pp. 12-14. ISSN 2340-1559

University of Delhi South Campus

Gulati, P and Varshney, R K and Virdi, J S (2009) Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A. Journal Of Applied Microbiology, 107 (3). pp. 875-884.

University of Delhi South Campus(New Delhi)

Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

University of Edinburgh (Midlothian)

Hickey, J M and Gorjanc, G and Varshney, R K and Nettelblad, C (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov model. Crop Science, 55. pp. 1-13. ISSN 0011-183X

University of Exeter (Exeter)

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

University of Florida (Gainesville)

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

University of Florida(Gainesville)

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

University of Florida, Gainesville (Florida)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

University of Frankfurt(Frankfurt am Main)

Varshney, R K and Horres, R and Molina, C and Nayak, S N and Jungmann, R and Swamy, P and Winter, P and Jayashree, B and Kahl, G and Hoisington, D A (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of SAT Agricultural Research, 5 (1). pp. 1-3. ISSN 0973-3094

University of Frankfurt(Frankfurt)

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

University of Georgia (Athens)

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647

University of Georgia (Tifton)

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Pandey, M K and Wang, H and Guo, X and Ji, X and Varshney, R K and Nwosu, V and Guo, B (2017) History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-133. ISBN 978-3-319-63933-8

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

University of Georgia (UGA) (Tifton)

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) The first high density genotyping ‘Axiom_Arachis’ 58K SNPs array for genetic studies and molecular breeding in groundnut. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

University of Georgia (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of Georgia(Athens)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679

University of Georgia(Tifton)

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Liu, Z and Feng, S and Pandey, M K and Chen, X and Culbreath, A K and Varshney, R K and Guo, B (2013) Identification of expressed resistance gene analogs from peanut (Arachis hypogaea L.) expressed sequence tags. Journal of Integrative Plant Biology, 55 (5). pp. 453-461. ISSN 1744-7909 (In Press)

University of Georgia, (Athens)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

University of Georgia, Athens (Georgia)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

University of Georgia, Center for Applied Genetic Technologies, (Athens)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

University of Georgia, Department of Plant Pathology (Tifton)

Divya, C and Gaurav, A and Hui, W and Pandey, M K and Culbreath, A K and Varshney, R K and Guo, B (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144. ISSN 0250-5371

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322

Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

University of Georgia, Department of Plant Pathology, (Tifton)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

University of Glasgow(Glasgow)

Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752

University of Guelph, Rm 316, Crop Science Bldg, 50 Stone Rd E, Guelph, ON, N1G 2W1, Canada

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

University of Haifa, (Haifa)

Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644

University of Helsinki Helsinki Finland

Schulman, A H and Gupta, P K and Varshney, R K (2005) Organization of Retrotransposons and Microsatellites in Cereal Genomes. In: Cereal Genomics. Springer Netherlands, pp. 83-118. ISBN 978-1-4020-2359-0

University of Hohenheim(Stuttgart)

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Varshney, R K and Parzies, H K (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435. ISSN 1573-5060

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Parzies, H K and Bharathi, A and Varshney, R K and Gowda, C L L (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223. ISSN 1479-2621

University of Hyderabad

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

University of Hyderabad(Gachibowli)

Jayashree, B and Prakash, A B and Jami, A and Reddy, P S and Nayak, S N and Varshney, R K (2009) Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes, 2. pp. 1-5.

University of Illinois(Urbana)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

University of Jerusalem(Rehovot)

McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687

University of Kalyani(Kalyani)

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

University of Kashmir (Srinagar)

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

University of Kentucky(Lexington)

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752

University of KwaZulu-Natal (Pietermaritzburg)

Obala, J and Saxena, R K and Singh, V K and Vechalapu, S and Das, R R and Rathore, A and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian journal of crop science, 12 (12). pp. 1859-1865. ISSN 1835-2707

Kaoneka, S R and Saxena, R K and Singh, V K and Sameer Kumar, C V and Shimelis, H A and Varshney, R K (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

University of KwaZulu-Natal, African Center for Crop Improvement (Pietermaritzburg)

Obala, J and Saxena, R K and Singh, V K and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics (TSI), 294 (1). pp. 57-68. ISSN 1617-4615

Saxena, R K and Obala, J and Sinjushin, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784. ISSN 0040-5752

University of KwaZulu-Natal, African Center for Crop Improvement, Scottsville, Pietermaritzburg

Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, C V S and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports (TSI), 10 (1). pp. 1-17. ISSN 2045-2322

University of Leeds(Leeds)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

University of Malawi (Blantyre)

Gumma, M K and Tsusaka, T W and Mohammed, I and Chavula, G and Ganga Rao, N V P R and Okori, P and Ojiewo, C O and Varshney, R K and Siambi, M and Whitbread, A M (2019) Monitoring Changes in the Cultivation of Pigeonpea and Groundnut in Malawi Using Time Series Satellite Imagery for Sustainable Food Systems. Remote Sensing (TSI), 11(12) (1475). pp. 1-23. ISSN 2072-4292

University of Maryland, MD

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

University of Milano (Milan)

Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109

University of Missouri (Columbia)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

University of Missouri (Missouri)

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

University of Missouri (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of Missouri(Columbia)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372

Varshney, R K and Roorkiwal, M and Nguyen, T (2013) Legume Genomics: From Genomic Resources to Molecular Breeding. The Plant Genome, 6 (3). pp. 1-7. ISSN 1940-3372

University of Missouri, Division of Plant Sciences, 25 Agriculture Lab Bldg, College of Agriculture Food and Natural Resources, University of Missouri, Columbia, MO

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

University of Missouri, National Center for Soybean Biotechnology (Columbia)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

University of Missouri, National Center for Soybean Biotechnology and Division of Plant Sciences (Columbia)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

University of Montpellier (Montpellier)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

University of Natural Resources and Life Sciences (Vienna)

Kumar, S and Das, A and Hauser, M and Muricho, G and Degefu, T and Fikre, A and Ojiewo, C and Ferede, S and Varshney, R K (2022) Estimating the potential to close yield gaps through increased efficiency of chickpea production in Ethiopia. Food Security, 14. pp. 1241-1258. ISSN 1876-4525

University of Nebraska (Lincoln)

Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836

University of Nebraska(Lincoln)

Tuteja, R and Saxena, R K and Davila, J and Shah, T and Chen, W and Xiao, Y-L and Fan, G and Saxena, K B and Alverson, A J and Spillane, C and Town, C and Varshney, R K (2013) Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes. DNA Research, 20 (5). pp. 485-495. ISSN 1756-1663

University of Nebraska-Lincoln (Lincoln)

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

University of Nebraska-Lincoln (NE)

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

University of Nebraska-Lincoln, Lincoln

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

University of Nebraska–Lincoln (NE)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

University of North Bengal(Siliguri)

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

University of North Carolina(Charlotte)

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

University of Nottingham

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

University of Nottingham (UK)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of Queensland

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

University of Queensland (Australia)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of Queensland (St. Lucia)

Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.

University of Queensland(Brisbane)

Azam, S and Rathore, A and Shah, T and Mohan, T and Amindala, BP and Ruperao, P and Katta, M A V S K and Varshney, R K (2014) An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data. PLoS ONE, 9 (7). pp. 1-11. ISSN 1932-6203

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

University of Queensland(Queensland)

Ruperao, P and Chan, C-K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrana, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal. ISSN 1467-7652

University of Queensland, Brisbane (Queensland)

Ruperao, P and Bayer, P and Kenneth Chan, C K and Hayashi, S and Roorkiwal, M and Chitikineni, A and Sutton, T and Batley, J and Varshney, R K and Edwards, D (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

University of Queensland, School of Agriculture and Food Science (Queensland)

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

University of Reading, Reading

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

University of Sao Paulo(Ribeirão Preto)

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

University of Saskatchewan (Saskatchewan)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

University of Saskatchewan(Saskatoon)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Gangola, M and Khedikar, Y and Gaur, P M and Baga, M and Varshney, R K and Chibbar, R (2012) Variation in important seed constituents among various chickpea genotypes. Quality Assurance and Safety of Crops & Foods, 4 (3). pp. 136-158. ISSN 1757-837X

University of Saskatchewan, 51 Campus Dr., Saskatoon

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

University of Southern Queensland (Toowoomba)

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

University of Southern Queensland (USQ), Toowoomba, Australia

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

University of Southern Queensland(Toowoomba)

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322

University of Southern Queensland, Toowoomba

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

University of Sussex(Sussex)

Flowers, T J and Gaur, P M and Gowda, C L L and Krishnamurthy, L and Samineni, S and Siddique, K H M and Turner, N C and Vadez, V and Varshney, R K and Colmer, T D (2010) Salt sensitivity in chickpea. Plant, Cell and Environment , 33 (4). pp. 490-509. ISSN 0140-7791

University of Sydney(Camden)

Mir, R R and Zaman-Allah, M and Sreenivasulu, N and Trethowan, R and Varshney, R K (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. TAG Theoretical and Applied Genetics, 125 (4). pp. 625-645. ISSN 1432-2242

University of Technology and Management (Odisha)

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

University of Tuscia (Italy)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of Vermont (Burlington)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

University of Vermont(Burlington)

Guerra-García, A and Trněný, O and Brus, J and Renzi, J P and Kumar, S and Bariotakis, M and Coyne, C J and Chitikineni, A and Bett, K E and Varshney, R K and Pirintsos, S and Berger, J and Wettberg, E J B V and Smýkal, P (2024) Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology (TSI), 26 (2). pp. 232-244. ISSN 1435-8603

University of Vermont, 63 Carrigan Drive, Jeffords Hall, Burlington, VT

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

University of Vienna(Vienna)

Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372

Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372

University of Western Australia (Perth)

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

Ruperao, P and Bayer, P and Kenneth Chan, C K and Hayashi, S and Roorkiwal, M and Chitikineni, A and Sutton, T and Batley, J and Varshney, R K and Edwards, D (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

University of Western Australia (UWA) (Crawley)

Varshney, R K and Pandey, M K and Puppala, N (2017) Future Prospects for Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 165-169. ISBN 978-3-319-63933-8

Nayak, S N and Pandey, M K and Jackson, S A and Liang, X and Varshney, R K (2017) Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-147. ISBN 978-3-319-63933-8

University of Western Australia(Perth)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372

Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224

University of Wisconsin (USA)

Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X

University of the Punjab(Lahore)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona

McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052

Università degli studi di Modena e Reggio Emilia

Marcel, T C and Varshney, R K and Barbieri, M and Jafary, H and Kock, M J D de and Graner, A and Niks, R E (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. TAG Theoretical and Applied Genetics, 114 (3). pp. 487-500. ISSN 1432-2242

Université Grenoble-Alpes, Centre National de la Recherche Scientifique (Grenoble)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive (Lyon)

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Université Nationale d’Agriculture(Kétou)

Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440

Université de Montpellier(Montpellier)

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

Université de Montpellier, INRA, LEPSE (Montpellier)

Varshney, R K and Tuberosa, R and Tardieu, F (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany (TSI), 69 (13). pp. 3175-3179. ISSN 0022-0957

Université de Toulouse (Toulouse)

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Upland Crop Division, National Institute of Crop Science, Rural Development Administration (Suwon)

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

Uppsala University (Uppsala)

Hickey, J M and Gorjanc, G and Varshney, R K and Nettelblad, C (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov model. Crop Science, 55. pp. 1-13. ISSN 0011-183X

Vasantrao Naik Marathwada Krishi Vidyapeeth (VNMKV) (Parbhani)

Shruthi, H B and Hingane, A J and ReddiSekhar, M and Srivarsha, J and Bhosle, T M and Saxena, R K and Varshney, R K and Gaur, P M and Wani, S P and Sameer Kumar, C V (2017) Super early pigeonpea varities and hybrids: New intervener for maximized, time specific dry land production. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Vellore Institute of Technology(Vellore)

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Vidyasagar University(West Bengal)

Kabiraj, A and Halder, U and Panja, A S and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Detailed genomic and biochemical characterization and plant growth promoting properties of an arsenic-tolerant isolate of Bacillus pacificus from contaminated groundwater of West Bengal, India. Biocatalysis and Agricultural Biotechnology (TSI), 52. ISSN 1878-8181

Vienna International Centre(Vienna)

Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799

Vienna Metabolomics Center (VIME), University of Vienna

Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372

Vienna Metabolomics Center (VIME), University of Vienna (Vienna)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737

Vienna Metabolomics Center (VIME), University of Vienna, Althanstrasse

Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762

Vienna Metabolomics Center (VIME), University of Vienna, Vienna

Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X

Vienna Metabolomics Center (VIME), University of Vienna, Vienna, Austria

Weckwerth, W and Ghatak, A and Bellaire, A and Chaturvedi, P and Varshney, R K (2020) PANOMICS meets germplasm. Plant Biotechnology Journal (TSI), 18 (7). pp. 1507-1525. ISSN 1467-7644

Vienna Metabolomics Center, University of Vienna, Vienna

Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372

Vietnamese Academy Agriculture Science

Cuc, L M and Mace, E S and Crouch, J H and Quang, V D and Long, T D and Varshney, R K (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (55). pp. 1-11.

Vijaya Raje Scindia Krishi Vishwa Vidyalaya(Gwalior)

Saxena, K B and Kumar, R V and Tikle, A N and Saxena, M K and Gautam, V S and Rao, S K and Khare, D K and Chauhan, Y S and Saxena, R K and Reddy, B V S and Sharma, D and Reddy, L J and Green, J M and Faris, D G and Mula, M G and Sultana, R and Srivastava, R K and Gowda, C L L and Sawargaonkar, S L and Varshney, R K (2013) ICPH 2671 – the world’s first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485. ISSN 1439-0523 (In Press)

Virginia Tech(Virginia)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Visva-Bharati (Santiniketan)

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Visva-Bharati (Shantiniketan)

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Visva-Bharati, Santiniketan (West Bengal)

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Wageningen University

Marcel, T C and Aghnoum, R and Durand, J and Varshney, R K and Niks, R E (2007) Dissection of the Barley 2L1.0 Region Carrying the ‘Laevigatum’ Quantitative Resistance Gene to Leaf Rust Using Near-Isogenic Lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615. ISSN 0894-0282

Marcel, T C and Varshney, R K and Barbieri, M and Jafary, H and Kock, M J D de and Graner, A and Niks, R E (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. TAG Theoretical and Applied Genetics, 114 (3). pp. 487-500. ISSN 1432-2242

Wageningen University & Research(Wageningen)

Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948

Wageningen University and Research(Wageningen)

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Wageningen University(Droevendaalsesteeg)

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

Wageningen University(Wageningen)

Witzel, K and Weidner, A and Surabhi, G K and Varshney, R K and Kunze, G and Buck-Sorlin, G H and Borner, A and Mock, H P (2010) Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination. Plant, Cell and Environment, 33 (2). pp. 211-222.

Washington State University (Pullman)

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) Future Prospects for Chickpea Research. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-142. ISBN 978-3-319-66115-5

Washington State University(Pullman)

Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036

Varshney, R K and Coyne, C J and Swamy, P and Hoisington, D A (2008) Molecular identification of genetically distinct accessions in the USDA chickpea core collection. Pisum Genetics, 39. pp. 32-33. ISSN 1320-2510

West Africa Center for Crop Improvement (WACCI), University of Ghana, Accra, Ghana

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

West Africa Centre for Crop Improvement (WACCI), University of Ghana (Legon)

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Western Sydney University(Penrith)

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

World Vegetable Center (AVDRC) (Messa Yaoundé)

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

World Vegetable Center, South Asia (Hyderabad)

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X

World Vegetable Center, South and Central Asia (Hyderabad)

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Wuhan University(Wuhan)

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

Xiangyang Academy of Agricultural Sciences (Xiangyang)

Luo, H and Ren, X and Li, Z and Xu, Z and Li, X and Huang, L and Zhou, X and Chen, Y and Chen, W and Lei, Y and Liao, B and Pandey, M K and Varshney, R K and Guo, B and Jiang, X and Liu, F and Jiang, H (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (58). pp. 1-12. ISSN 1471-2164

Yangzhou University(Yangzhou)

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Yunnan Academy of Agricultural Sciences (Kunming)

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Zhejiang Agriculture and Forestry University(Hangzhou)

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Zhongkai University of Agriculture and Engineering (Guangzhou)

Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036

Zonal Agricultural Research Station(Karnataka)

Muniswamy, S and Kumar, P and Saxena, R K and Geeta, - and Varshney, R K (2022) Stability of advanced medium duration genotypes across seasons for yield in pigeonpea [Cajanus cajan (L.) millsp.]. Indian Journal of Agricultural Research, 56 (2). pp. 129-134. ISSN 0976-058X

Zonal Agricultural Research Station, University of Agricultural Sciences - Raichur

Sab, S and Lokesha, R and Mannur, D M and Somasekhar, S and Jadhav, K and Mallikarjuna, B P and Laxuman, C and Yeri, S and Valluri, V and Bajaj, P and Chitikineni, A and Vemula, A K and Rathore, A and Varshney, R K and Shankergoud, I and Thudi, M (2020) Genome-Wide SNP Discovery and Mapping QTLs for Seed Iron and Zinc Concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition (TSI), 7 (559120). pp. 1-9. ISSN 2296-861X

iCarbonX (Shenzhen)

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

wheat physiology at the International Maize and Wheat Improvement Center

Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397

Área de Mejora y Biotecnología, IFAPA Centro “Alameda del Obispo” (Córdoba)

Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336

This list was generated on Tue Dec 24 06:49:06 2024 UTC.