Browse by ICRISAT Creators

Number of items: 484.

Department of Biotechnology, Government of India

Roorkiwal, M and Sawargaonkar, S L and Chitikineni, A and Thudi, M and Saxena, R K and Upadhyaya, H D and Vales, M I and Riera-Lizarazu, O and Varshney, R K (2013) Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform. The Plant Genome, 6 (2). pp. 1-10. ISSN 1940-3372

Accelerated Crop Improvement Programme (ACIP) from the Department of Biotechnology (DBT), Government of India

Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372

Agricultural Agreement Research Fund (JA) in Norway

Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836

Agricultural Science and Technology Program of Guangdong

Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY, 21 (3). pp. 491-498. ISSN 1814–9596 (In Press)

Asian Development Bank

Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322

Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164

Mace, E S and Varshney, R K and Mahalakshmi, V and Seetha, K and Gafoor, A and Leeladevi, Y and Crouch, J H (2008) In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science, 174 (1). pp. 51-60. ISSN 0168-9452

Australia Indo-Strategic Research Fund (AISRF)

Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173

Australia-India Strategic Research Fund

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

Australia-India Strategic Research Fund (AISRF)

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408

Australian Government, & the Bill & Melinda Gates Foundation

Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791

Australian India Strategic Research Fund (AISRF)

Doddamani, D and Katta, M A V S K and Khan, A W and Agarwal, G and Shah, T M and Varshney, R K (2014) CicArMiSatDB: the chickpea microsatellite database. BMC Bioinformatics, 15 (212). pp. 1-7. ISSN 1471-2105

Australian Indo Strategic Research Fund (AISRF) of Ministry of Science & Technology

Roorkiwal, M and von Wettberg, E J and Upadhyaya, H D and Warschefsky, E and Rathore, A and Varshney, R K (2014) Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers. PLoS ONE, 9 (7). pp. 1-10. ISSN 1932-6203

Australian Indo Strategic Research Funds (AISRF)

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

Australian Research Council

Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Krishnamurthy, L and Turner, N C and Gaur, P M and Upadhyaya, H D and Varshney, R K and Siddique, K H M and Vadez, V (2011) Consistent Variation across Soil Types in Salinity Resistance of a Diverse Range of Chickpea (Cicer arietinum L.) Genotypes. Journal Of Agronomy And Crop Science, 197 (3). pp. 214-227.

Australia–India Strategic Research

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

BMBF Bioinformatics Centre, Gatersleben

Varshney, R K and Grosse, I and Hahnel, U and Siefken, R and Prasad, M and Stein, N and Langridge, P and Altschmied, L and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. TAG Theoretical and Applied Genetics, 113 (2). pp. 239-250. ISSN 1432-2242

Bill & Melinda Gates Foundation

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X

Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752

Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644

Saxena, R K and Rathore, A and Bohra, A and Yadav, P and Das, R R and Khan, A W and Singh, V K and Chitikineni, A and Singh, I P and Sameer Kumar, C V and Varshney, R K (2018) Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. The Plant Genome (TSI), 11 (3). pp. 1-10. ISSN 1940-3372

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290

Monyo, E S and Varshney, R K (2016) Seven seasons of learning and engaging smallholder farmers in the drought-prone areas of sub-Saharan Africa and South Asia through Tropical Legumes, 2007–2014. ICRISAT, Patancheru. ISBN 978-92-9066-568-7

Krishnamurthy, L and Kashiwagi, J and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Singh, Sube and Purushothaman, R and Varshney, R K (2013) Partitioning coefficient—A trait that contributes to drought tolerance in chickpea. Field Crops Research, 149. pp. 354-365. ISSN 0378-4290

Krishnamurthy, L and Kashiwagi, J and Tobita, S and Ito, O and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Sheshshayee, M S and Singh, Sube and Vadez, V and Varshney, R K (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 14 (12). pp. 1350-1361. ISSN 1445-4408

Bill & Melinda Gates Foundation (BMGF)

Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372

Bill & Melinda Gates Foundation (BMGF), USA

Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X

Bill & Melinda Gates Foundation (BMGF)-supported Tropical Legumes III project

Gumma, M K and Tsusaka, T W and Mohammed, I and Chavula, G and Ganga Rao, N V P R and Okori, P and Ojiewo, C O and Varshney, R K and Siambi, M and Whitbread, A M (2019) Monitoring Changes in the Cultivation of Pigeonpea and Groundnut in Malawi Using Time Series Satellite Imagery for Sustainable Food Systems. Remote Sensing (TSI), 11(12) (1475). pp. 1-23. ISSN 2072-4292

Bill & Melinda Gates Foundation (Tropical Legumes III [OPP124589], Genomic Open-source Breeding Informatics Initiative (GOBII)), and Department of Agriculture Cooperation & Farmers Welfare (DAC&FW), Govt. of India

Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322

Bill & Melinda Gates Foundation (Tropical Legumes III)

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Bill & Melinda Gates Foundation (Tropical Legumes III) and Department of Agriculture Cooperation & Farmer’s Welfare, Ministry of Agriculture & Farmer’s Welfare, Government of India

Roorkiwal, M and Jain, A and Kale, S M and Doddamani, D and Chitikineni, A and Thudi, M and Varshney, R K (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal. pp. 1-12. ISSN 14677644

Bill & Melinda Gates Foundation (Tropical Legumes III), MARS Chocolate Inc., & The Peanut Foundation

Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322

Bill & Melinda Gates Foundation (Tropical Legumes III), and Department of Biotechnology, Govt of India

Jain, A and Roorkiwal, M and Kale, S and Garg, V and Yadala, R and Varshney, R K (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE (TSI), 14 (3). pp. 1-13. ISSN 1932-6203

Bill & Melinda Gates Foundation (Tropics Legumes I, II, and III)

Khera, P and Pandey, M K and Mallikarjuna, N and Sriswathi, M and Roorkiwal, M and Janila, P and Sharma, S and Shilpa, K and Sudini, H and Guo, B and Varshney, R K (2018) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics (TSI). pp. 1-14. ISSN 1617-4615

Bill and Melinda Gates Foundation

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16. pp. 1-19. ISSN 1940-3372

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genesand diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16 (4). pp. 1-19. ISSN 1940-3372

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440

Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395

Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644

Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X

Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541

Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811

Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408

Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

Varshney, R K and Pandey, M K and Janila, P and Nigam, S N and Sudini, H and Gowda, M V C and Sriswathi, M and Radhakrishnan, T and Manohar, S S and Nagesh, P (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781. ISSN 0040-5752

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Janila, P and Nigam, S N and Pandey, M K and Nagesh, P and Varshney, R K (2013) Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Genetics and Genomic, 4 (23). pp. 1-16.

Saxena, K B and Kumar, R V and Tikle, A N and Saxena, M K and Gautam, V S and Rao, S K and Khare, D K and Chauhan, Y S and Saxena, R K and Reddy, B V S and Sharma, D and Reddy, L J and Green, J M and Faris, D G and Mula, M G and Sultana, R and Srivastava, R K and Gowda, C L L and Sawargaonkar, S L and Varshney, R K (2013) ICPH 2671 – the world’s first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485. ISSN 1439-0523 (In Press)

Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806

Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138

Mir, R R and Zaman-Allah, M and Sreenivasulu, N and Trethowan, R and Varshney, R K (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. TAG Theoretical and Applied Genetics, 125 (4). pp. 625-645. ISSN 1432-2242

Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788

Sujay, V and Gowda, M V C and Pandey, M K and Bhat, R S and Khedikar, Y P and Nadaf, H L and Gautami, B and Sarvamangala, C and Lingaraju, S and Radhakrishan, T and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788. ISSN 1572-9788

Saxena, K B and Sultana, R and Saxena, R K and Kumar, R V and Sandhu, J S and Rathore, A and Kavi Kishor, P B and Varshney, R K (2011) Genetics of Fertility Restoration in A4-Based, Diverse Maturing Hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51. pp. 574-578. ISSN 0011-183X

Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Bill and Melinda Gates Foundation (BMGF)

Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336

Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541

Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060

Bill and Melinda Gates Foundation (BMGF), USA

Hiremath, P J and Kumar, A and Penmetsa, R V and et al, . (2012) Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal, 10 (6). pp. 716-732. ISSN 1467-7652

Bill and Melinda Gates Foundation (BMGF), United States

Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021

Bill and Melinda Gates Foundation for Tropical Legumes II project and USAID project

Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541

Bill and Melinda Gates Foundation, Grant/Award Number: OPP1114827

Varshney, R K and Ojiewo, C O and Monyo, E (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market-demand to benefit smallholder farmers and empowerment of national programmes in sub-Saharan Africa and South Asia. Plant Breeding (TSI), 138 (4). pp. 379-388. ISSN 01799541

Bill and Melinda Gates Foundation-CGIAR Generation Challenge Program

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Biotechnology and Biological Sciences Research Council (BBSRC)

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Bundesministerium für Wirtschaftliche Zusammenarbeit und Entwicklung

Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290

Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452

Bundesministerium für Wirtschaftliche Zusammenarbeit und Entwicklung-GTZ project

Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621

CGIAR

Mir, R R and Thudi, M and Chamarthi, S K and Krishnamurthy, L and Gaur, P M and Varshney, R K (2012) Translational Root Genomics for Crop Improvement. In: Root Genomics and Soil Interactions. John Wiley & Sons, Inc., USA, pp. 249-264. ISBN 9781118447093

CGIAR Challenge Programme on Climate Change, Agriculture and Food Security

Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.

CGIAR Fund Donors

CGIAR Generation Challenge Progamme (GCP)

CGIAR Generation Challenge Program

Katta, M A V S K and Khan, A W and Doddamani, D and Thudi, M and Varshney, R K (2015) NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data. PLOS One, 10 (10). pp. 1-9. ISSN 1932-6203

CGIAR Generation Challenge Program (GCP)

Rajaram, V and Nepolean, T and Senthilvel, S and Varshney, R K and Vadez, V and Srivastava, R K and Shah, T M and Supriya, A and Kumar, S and Kumari, B R and Bhanuprakash, A and Narasu, M L and Riera-Lizarazu, O and Hash, C T (2013) Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs. BMC Genomics, 14 (159). pp. 1-15.

CGIAR Generation Challenge Program (GCP), Mexico

Azam, S and Rathore, A and Shah, T and Mohan, T and Amindala, BP and Ruperao, P and Katta, M A V S K and Varshney, R K (2014) An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data. PLoS ONE, 9 (7). pp. 1-11. ISSN 1932-6203

CGIAR Generation Challenge Program; National Food Security Mission of the Government of India; Bill & Melinda Gates Foundation

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

CGIAR Generation Challenge Programme

Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806

Varshney, R K and Ribaut, J M and Buckler, E S and et al, . (2012) Can genomics boost productivity of orphan crops? Nature Biotechnology, 30. pp. 1172-1176. ISSN 1087-0156

Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867

Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523

Saxena, R K and Cui, X and Thakur, V and Walter, B and Close, T J and Varshney, R K (2011) Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.). Functional & Integrative Genomics, 11 (4). pp. 651-657.

CGIAR Generation Challenge Programme (GCP)

Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203

Mir, R R and Hiremath, P J and Riera-Lizarazu, O and Varshney, R K (2013) Evolving Molecular Marker Technologies in Plants: From RFLPs to GBS. In: Diagnostics in Plant Breeding. Springer Science+Business, New York, pp. 229-247. ISBN 978-94-007-5686-1 ;978-94-007-5687-8 (eBook)

CGIAR Generation Challenge Programme (GCP) and United States Agency for International Development (USAID)

Sinha, P and Singh, V K and Suryanarayana, V and Krishnamurthy, L and Saxena, R K and Varshney, R K (2015) Evaluation and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) Under Drought Stress Conditions. PLOS One, 10 (4). pp. 1-15. ISSN 1932-6203

CGIAR Generation Challenge Programme (GCP), Mexico

CGIAR Generation Challenge Programme (Theme Leader Discretionary Grant)

Khera, P and Upadhyaya, H D and Pandey, M K and Roorkiwal, M and Sriswathi, M and Janila, P and Guo, Y and McKain, M R and Nagy, E D and Knapp, S J and Leebens-Mack, J and Conner, J A and Ozias-Akins, P and Varshney, R K (2013) Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays. The Plant Genome, 6 (3). pp. 1-11. ISSN 1940-3372

CGIAR Generation Challenge Programme and Australia -India Strategic Research Fund (AISRF)

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

CGIAR Generation Challenge Programme(GCP), Mexico

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

CGIAR Generation Challenge Programme(Mexico)

Burow, M D and Leal-Bertioli, S C M and Simpson, C E and Ozias-Akins, P and Chu, Y and Denwar, N N and Chagoya, J and Starr, J L and Moretzsohn, M C and Pandey, M K and Varshney, R K and Holbrook, C C and Bertioli, D J (2013) Marker-Assisted Selection for Biotic Stress Resistance in Peanut. In: Translational Genomics for Crop Breeding: Biotic Stress. Wiley Blackwell, pp. 125-150. ISBN 978-0-470-96290-9

CGIAR Generation challenge program

CGIAR Research Program on Dryland Cereals (CRP-DC)

Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752

CGIAR Research Program on Grain Legumes

Pazhamala, L T and Agarwal, G and Bajaj, P and Kumar, V and Kulshreshtha, A and Saxena, R K and Varshney, R K (2016) Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLOS ONE, 11 (10). 01-17. ISSN 1932-6203

CGIAR Research Program on Grain Legumes and Dryland Cereals (CRP-GLDC)

Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

CGIAR Research Program on Grain Legumes and Dryland Cereals (GLDC)

CGIAR Research Program on Water, Land and Ecosystems (WLE)

CGIAR(GCP)

Tuteja, R and Saxena, R K and Davila, J and Shah, T and Chen, W and Xiao, Y-L and Fan, G and Saxena, K B and Alverson, A J and Spillane, C and Town, C and Varshney, R K (2013) Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes. DNA Research, 20 (5). pp. 485-495. ISSN 1756-1663

Saxena, R K and Penmetsa, R V and Upadhyaya, H D and Kumar, Ashish and Varshney, R K and et al, . (2012) Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes. DNA Research. pp. 1-13. ISSN 1756-1663

CGIAR-Generation Challenge Programme

Janila, P and Nigam, S N and Pandey, M K and Nagesh, P and Varshney, R K (2013) Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Genetics and Genomic, 4 (23). pp. 1-16.

CGIAR-Natural Science Foundation of China (NSFC), China

CGIAR’s Generation Challenge Programme, (BMGF), (USAID), (BIPP), (ICAR), and Department of Agriculture Cooperation & Farmers Welfare, Ministry of Agriculture & Farmers Welfare, Government of India.

Saxena, K B and Choudhary, A K and Saxena, R K and Varshney, R K (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science (TSI), 68 (2). pp. 159-167. ISSN 1344-7610

CGP-CGIAR

Pandey, M K and Guo, B and Holbrook, C C and Janila, P and Zhang, X and Bertioli, D J and Isobe, S and Liang, S and Varshney, R K (2014) Molecular Markers, Genetic Maps, and QTLs for Molecular Breeding in Peanut. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 79-113. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2

CRP‐Grain Legumes and Dryland Cereals

CSIR-UGC, New Delhi, India

Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752

Central Public interest Scientific Institution Basal Research Fund

Liu, N and Wu, B and Pandey, M K and Huang, L and Luo, H and Chen, Y and Zhou, X and Chen, W and Huai, D and Yu, B and Chen, H and Guo, J and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2022) Gene expression and DNA methylation altering lead to the high oil content in wild allotetraploid peanut (A. monticola). Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Central Public-interest Scientific Institution Basal

Wang, L and Yu, S and Tong, C and Zhao, Y and Liu, Y and Song, C and Zhang, Y and Zhang, X and Wang, Y and Hua, W and Li, D and Li, F and Yu, J and Xu, C and Han, X and Huang, S and Tai, S and Wang, J and Xu, X and Li, Y and Liu, S and Varshney, R K and Wang, J and Zhang, X (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (R39). pp. 1-13. ISSN 1465-6906

Centre for BioSystems Genomics

Centre of Excellence (CoE) grant from the Department of Biotechnology (DBT) of Government of India

Ch Charan Singh University(Meerut)

Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.

Chaudhary Charan Singh University(Meerut)

Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523

China Agriculture Research System

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

Yu, B and Jiang, H and Pandey, M K and Huang, L and Huai, D and Zhou, X and Kang, Y and Varshney, R K and Sudini, H and Ren, X and Luo, H and Liu, N and Chen, W and Guo, J and Li, W and Ding, Y and Jiang, Y and Lei, Y and Liao, B (2020) Identification of Two Novel Peanut Genotypes Resistant to Aflatoxin Production and Their SNP Markers Associated with Resistance. Toxins (TSI), 12 (156). pp. 1-16. ISSN 2072-6651

Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X

China Postdoctoral Science Foundation

Chinese Academy of Agricultural Sciences

Commonwealth of Australia

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Consultative Group for International Agricultural Research

Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647

Varshney, R K and Nayak, S N and Jayashree, B and Eshwar, K and Upadhyaya, H D and Hoisington, D A (2007) Development of cost-effective SNP assays for chickpea genome analysis and breeding. Journal of SAT Agricultural Research, 3 (1). pp. 1-3. ISSN 0973-3094

Consultative Group for International Agricultural Research(CGIAR)

Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242

Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.

Council of Grain Growers Organizations(Western Australia)

Council of Scientific and Industrial Research(India)

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.

Aggarwal, R K and Hendre, P S and Varshney, R K and Bhat, P R and Krishnakumar, V and Singh, L (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. TAG Theoretical and Applied Genetics, 114 (2). pp. 359-372. ISSN 1432-2242

Crop Germplasm Resources Protection Project of Ministry of Agriculture

DBT Centre of Excellence (CoE)

DBT, Governement of India

DBT, Govt of India

DBT’s Ramalingaswami grant

Gopalakrishnan, S and Thakur, V and Saxena, R K and Vadlamudi, S and Purohit, S and Kumar, V and Rathore, A and Chitikineni, A and Varshney, R K (2020) Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Scientific Reports (TSI), 10 (1). ISSN 2045-2322

DST, New Delhi

DST-Climate Change Program

Sharma, M and Sengupta, A and Ghosh, R and Agarwal, G and Tarafdar, A and Nagavardhini, A and Pande, S and Varshney, R K (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (37353). 01-11. ISSN 2045-2322

DST-JSPS Bilateral Program

Gayathri, M and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1) (10). pp. 1-6. ISSN 1756-0500

DST-JSPS Bilateral Program and the Kazusa DNA Research Institute Foundation

Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X

Deparment of Biotechnology, Government of India and Government of Karnataka

Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743

Department of Agriculture Cooperation & Farmers Welfare, Ministry of Agriculture & Farmers Welfare, Government ofIndia

Saxena, R K and Molla, J and Yadav, P and Varshney, R K (2020) High resolution mapping of restoration of fertility (Rf) by combining large population and high density genetic map in pigeonpea [Cajanus cajan (L.) Millsp]. BMC Genomics (TSI), 21 (1). pp. 1-8. ISSN 1471-2164

Department of Agriculture and Co-operation and Farmer Welfare (DAC&FW), Ministry of Agriculture, Government of India

Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425

Department of Agriculture and Cooperation & Farmers Welfare

Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203

Department of Agriculture and Cooperation and Farmers Welfare, Govt. of India

Department of Agriculture, Cooperation & Farmers Welfare, Ministry of Agriculture & Farmer’s Welfare, USAID, ICRISAT

Saxena, R K and Sameer Kumar, C V and Bohra, A and Singh, I P and Singh, N P and Varshney, R K (2017) Pigeonpea Research for Enhancing Crop Productivity. Pulse India, 2 (7). pp. 8-10.

Department of Biotechnology

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Department of Biotechnology (DBT)

Department of Biotechnology (DBT) of Government of India (Centre of Excellence grant)

Department of Biotechnology (DBT) of Ministry of Science & Technology, India

Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747

Department of Biotechnology (DBT), Government of India

Varshney, R K and Hoisington, D A and Nayak, S N and Graner, A (2009) Molecular Plant Breeding: Methodology and Achievements. In: Plant Genomics: Methods and Protocols. Methods in Molecular Biology (V 513). Humana Press, a part of Springer Science + Business Media, LLC, New York, pp. 283-304. ISBN 978-1-58829-997-0 (Print) ; 978-1-59745-427-8 (Online)

Department of Biotechnology, Government of India, Tropical Legumes Project TLII from Bill and Melinda Gates Foundation

Department of Biotechnology, India

Department of Science and Technology

Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X

Department of Science and Technology (DST)

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

Department of Science and Technology (DST) Government of India

Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X

Department of Science and Technology, Government of India

Department of Science and technology (DST),Government of India

Palit, P and Kudapa, H and Zougmore, R and Kholova, J and Whitbread, A M and Sharma, M and Varshney, R K (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22. pp. 1-12. ISSN 2214-6628

Dutch Organization for Scientific Research

Marcel, T C and Aghnoum, R and Durand, J and Varshney, R K and Niks, R E (2007) Dissection of the Barley 2L1.0 Region Carrying the ‘Laevigatum’ Quantitative Resistance Gene to Leaf Rust Using Near-Isogenic Lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615. ISSN 0894-0282

Dutch Organization for Scientific Research

Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242

European Commission

Fairchild Tropical Botanic Garden

Saxena, R K and von Wettberg, E and Upadhyaya, H D and Sanchez, V and Songok, S and Saxena, K B and Kimurto, P.K. and Varshney, R K (2014) Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). pp. 1-9. ISSN 1932-6203

Federal Ministry for Economic Cooperation and Development, Germany

Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Parzies, H K and Bharathi, A and Varshney, R K and Gowda, C L L (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223. ISSN 1479-2621

Federal Ministry of Education and Research

Fellowship - Council of Scientific and Industrial Research (CSIR), Government of India

Finkel Family Trust

Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.

Florida International University

Foundation for Research Levy on Agricultural Products

Fund for Basic and Strategic Research in Agriculture

GRDC Australia

Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242

Generation Challenge Program

Jayashree, B and Hanspal, M S and Srinivasan, R and Vigneshwaran, R and Varshney, R K and Spurthi, N and Eshwar, K and Ramesh, N and Chandra, S and Hoisington, D A (2007) An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms. Comparative and Functional Genomics (35604). pp. 1-7. ISSN 1531-6912

Generation Challenge Program (GCP)

Generation Challenge Programme

Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408

Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750

Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242

Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663

Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242

Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.

Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.

Kulwal, P and Thudi, M and Varshney, R K (2011) Genomics Interventions in Crop Breeding for Sustainable Agriculture. In: Encyclopedia of Sustainability Science and Technology. Springer. ISBN 978-0-387-89469-0 (In Press)

Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D A (2011) Genomics and Physiological Approaches for Root Trait Breeding to Improve Drought Tolerance in Chickpea (Cicer arietinum L.). In: Root Genomics. Springer, Germany, pp. 233-250. ISBN 9783540855453

Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.

Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26. pp. 371-380. ISSN 1572-9788

Thakur, V and Varshney, R K (2010) Challenges and Strategies for Next Generation Sequencing (NGS) Data Analysis. Journal of Computer Science & Systems Biology, 3. pp. 40-42.

Bohra, A and Mallikarjuna, N and Saxena, K B and Upadhyaya, H D and Vales, I and Varshney, R K (2010) Harnessing the Potential of Crop Wild Relatives through Genomics Tools for Pigeonpea Improvement. Journal of Plant Biology, 37 (1). pp. 83-98.

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743

Saxena, R K and Saxena, K B and Kumar, R V and Hoisington, D A and Varshney, R K (2010) Simple sequence repeat-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance to Fusarium wilt and sterility mosaic disease. Plant Breeding, 129. pp. 135-141. ISSN 0179-9541

Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).

Varshney, R K and Pande, S and Kannan, S and Thudi, M and Sharma, M and Gaur, P M and Hoisington, D A (2009) Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). Mycological Progress. pp. 1-11.

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2009) High level of natural variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding, 128 (5). pp. 486-494.

Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.

Varshney, R K and Dubey, A (2009) Novel genomic tools and modern genetic and breeding approaches for crop improvement. Journal of Plant Biochemistry and Biotechnology, 18 (2). pp. 127-138.

Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.

Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105

Generation Challenge Programme (GCP) of CGIAR

Generation Challenge Programme (GCP), National Fund of Indian Council of Agricultural Research, Pigeonpea Genomics Initiative under Indo-US Agricultural Knowledge Initiative (AKI) and Department of Biotechnology (Government of India)

Varshney, R K (2009) Gene-based marker systems in plants: High throughput approaches for marker discovery and genotyping. In: Molecular Techniques in Crop Improvement. Springer, Netherlands, pp. 119-142. ISBN 978-90-481-2966-9

Generation Challenge Programme(CGIAR)

Gautami, B and Fonce´ka, D and Pandey, M K and Sujay, V and Bhanuprakash, A and Shah, T and Nigam, S N and Hoisington, D A and Varshney, R K and et al, . (2012) An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.). Plos ONE-Biotechnology, 7 (7). pp. 1-11.

Georgia 418 Agricultural Commodity Commission for Peanuts

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Georgia Agricultural Commodity Commission

Liu, Z and Feng, S and Pandey, M K and Chen, X and Culbreath, A K and Varshney, R K and Guo, B (2013) Identification of expressed resistance gene analogs from peanut (Arachis hypogaea L.) expressed sequence tags. Journal of Integrative Plant Biology, 55 (5). pp. 453-461. ISSN 1744-7909 (In Press)

German Federal Ministry of Economic Cooperation and Development-ICARDA

Chabane, K and Varshney, R K and Graner, A and Valkoun, J (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881. ISSN 1573-5109

German Federal Ministry of Education and Research-GABI program

Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948

German Ministry of Education and Research

Goverment of Germany -the Federal Ministry of Education and Research

Government of Finland

Government of Georgia-Agricultural Commodity Commission for Peanuts

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372

Government of Georgia-National Peanut Board

Government of Georgia-Peanut Foundation

Government of India

Government of India - Department of Biotechnology

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229

Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.

Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.

Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.

Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

Government of India - Department of Biotechnology

Sharma, M and Nagavardhini, A and Thudi, M and Ghosh, R and Pande, S and Varshney, R K (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (454). pp. 1-14. ISSN 1471-2164

Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806

Mir, R R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Kilian, A and Cook, D R and Varshney, R K (2013) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding, 132 (5). pp. 472-478. ISSN 1439-0523

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Government of India - Department of Science and Technology

Government of India - Ministry of Agriculture

Government of India - Ministry of Agriculture - Department of Agriculture and Cooperation

Krishnamurthy, L and Gaur, P M and Basu, P S and Chaturvedi, S K and Tripathi, S and Vadez, V and Rathore, A and Varshney, R K and Gowda, C L L (2011) Large genetic variation for heat tolerance in the reference collection of chickpea (Cicer arietinum L.) germplasm. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 59-69.

Government of India -Ministry of Science and Technology

Government of India National Food Security Mission

Saxena, K B and Kumar, R V and Saxena, R K and Sharma, M and Srivastava, R K and Sultana, R and Varshney, R K and Vales, M I and Pande, S (2012) Identification of dominant and recessive genes for resistance to Fusarium wilt in pigeonpea and their implication in breeding hybrids. Euphytica, 188 (2). pp. 221-227. ISSN 1573-5060

Government of India- Department of Agriculture and Cooperation

Government of Japan

Kashiwagi, J and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Varshney, R K and Tobita, S (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 (1). pp. 88-95. ISSN 0378-4290

Government of Karnataka

Govt. of India, Ministry of Agriculture, Department of Agriculture and Cooperation

Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336

Grain Research and Development Corporation

Grains Research Development Corporation

Guangdong Province the Technology Plan in China

Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203

Hybrid Pigeonpea Parents Research Consortium (ICRISAT)

Hybrid Pigeonpea Parents Research Consortium and National Food security Mission, Department of Agriculture and Cooperation

Saxena, K B and Sameer Kumar, C V and Hingane, A J and Nagesh Kumar, M V and Vijaykumar, R and Saxena, R K and Patil, S and Varshney, R K (2016) Hybrid ICPH 2740 assures quantum jump in pigeonpea productivity in peninsular India. Journal of Food Legumes, 29 (2). pp. 142-144. ISSN 0970-6380

ICAR, Government of India

ICRISAT Pearl Millet Hybrid Parent Research Consortium (PMHPRC)

Singh, S and Gupta, S K and Thudi, M and Das, R R and Anil Kumar, V and Garg, V and Varshney, R K and Rathore, A and Pahuja, S K and Yadav, D V (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet. Crop Science (TSI), 58 (6). pp. 2379-2390. ISSN 0011-183X

ICRISAT-Pearl Millet Hybrid Parent Research Consortium (PMHPRC)

IRRI core fund

Indian Council of Agricultural Research

Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).

Gautami, B and Ravi, K and Narasu, M L and Hoisington, D A and Varshney, R K (2009) Novel set of groundnut SSR markers for germplasm analysis and interspecific transferability. International Journal of Integrative Biology, 7 (2). pp. 100-106.

Indian Council of Agricultural Research

Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Indian Council of Agricultural Research under the Indo-US Agricultural Knowledge Initiative

Kassa, M T and Penmetsa, R V and Carrasquilla-Garcia, N and et al, . (2012) Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives. PLoS ONE, 7 (6). pp. 1-13. ISSN 1932-6203

Indian Council of Agricultural Research-National Fund for Basic and Strategic Research in Agriculture

Indian Council of Agriculture Research

Indian Council of Agriculture Research (ICAR) and the Department of Biotechnology (DBT) of Government of India

Kulwal, P L and Thudi, M and Varshney, R K (2013) Crop breeding for sustainable agriculture, genomics interventions in. In: Sustainable Food Production. Springer, New York, pp. 501-513. ISBN 978-1-4614-5796-1

Indian Council of Research NATP-HRD

Indo-German Science Technology Centre

Indo-German Science Technology Centre (IGSTC)

Indo-German Science and Technology Centre

Indo-US Science and Technology Forum(Delhi)

Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523

Indo–US Agricultural Knowledge Initiative (AKI)

Institute of Crop Sciences

Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141

Integrated Scheme of Oilseeds, Pulses, Oilpalm and Maize (ISOPOM), Department of Agriculture and Co-operation (DAC), Ministry of Agriculture, Government of India.

Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203

International Crops Research Institute for the Semi-Arid Tropics

Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408

Saxena, R K (2010) Study of inheritance and identification of molecular markers for fertility restorers in pigeonpea [Cajanus cajan (L.) Millspaugh]. PHD thesis, International Crops Research Institute for the Semi-Arid Tropics .

International Science & Technology Cooperation Program of Guangdong Province

MARS-Wrigley

MARS-Wrigley, the USA

Ministry of Agriculture and Farmers Welfare, Government of India

Ministry of Education, Youth and Sports of the Czech Republic and the European Regional Development

Ministry of Science and Technology, Government of India through Indo-Australian

MoES and NCAOR

Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology, 47. pp. 115-133. ISSN 0722-4060

Modern Agro-industry Technology Research System

Zhu, W and Chen, X and Li, H and Zhu, F and Hong, Y and Varshney, R K and Liang, X (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409. ISSN 1573-5028

Modern Agro-industry Technology Research System (No. nycycx-19, CARS-14)

Chen, X and Zhu, W and Azam, S and Li, H and Zhu, F and Li, H and Hong, Y and Liu, H and Zhang, E and Wu, H and Yu, S and Zhou, G and Li, S and Zhong, N and Wen, S and Li, X and Knapp, S J and Ozias-Akins, P and Varshney, R K and Liang, X (2013) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.

Monsanto India(Bangalore)

Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523

NFBSRA-ICAR(New Delhi)

NPCyT 2017 2634, 2523 and CABANA project—BBSRC (BB/P027849/1)

National Agricultural Science Fund (NASF) of the Indian Council of Agricultural Research (ICAR), India

National Agricultural Science Fund (NASF) of the Indian Council of Agricultural Research (ICAR), India.

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

National Agricultural Science Fund (NASF), ICAR

National Basic Research Program of China

National Bureau of Agriculturally ImportantMicroorganisms (NBAIM)

Gopalakrishnan, S and Srinivas, V and Prakash, B and Arumugam, S and Vijayabharathi, R and Rupela, O and Kudapa, H and Krishnamohan, K and Varshney, R K (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169. pp. 40-48. ISSN 0944-5013

National Crop Germplasm Resources Center

Zhou, X and Guo, J and Pandey, M K and Varshney, R K and Huang, L and Luo, H and Liu, N and Chen, W and Lei, Y and Liao, B and Jiang, H (2021) Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies. Frontiers in Plant Science (TSI), 12 (637284). pp. 1-14. ISSN 1664-462X

National Food Security Mission (NFSM), Govt. of India; and Tropical Legumes II (TL II) project of Bill and Melinda Gates Foundation (BMGF) for financial support and Department of Science and Technology (DST), Govt. of India

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

National Fund for Basic and Strategic Research

National Fund of Indian Council of Agricultural Research (ICAR)

National Fund of the Basic and Strategic Research in Agriculture

National Key R&D Program of China

National Key Research and Development Program of China and National Natural Science Foundation of China

Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052

National Natural Science Foundation of China

Liu, N and Huang, L and Chen, W and Wu, B and Pandey, M K and Luo, H and Zhou, X and Guo, J and Chen, H and Huai, D and Chen, Y and Lei, Y and Liao, B and Ren, X and Varshney, R K and Jiang, H (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping. BMC Genetics (TSI), 21 (1). pp. 1-12. ISSN 1471-2156

National Natural Science Foundation of China (No. 30971819 and 30900907)

National Natural Science Foundation(China)

National Natural Science Foundations of China

Luo, H and Pandey, M K and Khan, A W and Wu, B and Guo, J and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (12). pp. 2356-2369. ISSN 1467-7644

National Peanut Board

National Peanut Board-Georgia

National Peanut Industry Technology System Construction

National Plant Germplasm Resources Sharing Platform

National Program for Crop Germplasm Protection of China

National Science Foundation

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

National Science Foundation (NSF) of China

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

National Science Foundation (NSF), USA

Kim, D H and Parupalli, S and Azam, S and Lee, S H and Varshney, R K (2013) Comparative sequence analysis of nitrogen fixation-related genes in six legumes. Frontiers in Plant Science, 4 (300). pp. 1-8.

Natural Science Foundation of China

Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229

Natural Science Foundation of Guangdong

Natural Science Foundation of Guangdong Province (No. 10151064001000002)

Natural Science Foundation(Guangdong Province)

New Mexico State University, Agricultural Experiment Station, USA

OPEC Fund for International Development

Open Access funded by Bill & Melinda Gates Foundation

Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266

Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052

Open Access funded by Sociedade Brasileira de Microbiologia

Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382

Peanut Foundation

Peanut Foundation-Georgia

Pearl River Science and Technology Nova of Guangzhou (No. 2011J2200035)

Pearl River Science and Technology Nova(Guangzhou)

Pigeonpea Genomics Initiative (PGI) of the Indian Council of Agricultural Research (ICAR)

Saxena, R K and Prathima, C and Saxena, K B and Hoisington, D A and Singh, N K and Varshney, R K (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.). Plant Breeding, 129 (2). pp. 142-148.

Plant Breeders Workgroup, University of Florida and by the USDA National Institute of Food and Agriculture

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Plant Germplasm Resources Sharing Platform

Rank Prize Fund’s New Lecturer Award

Rural Affairs of the People’s Republic of China

Rural Development Administration of the Republic of Korea

Rural Development Administration, Republic of Korea

Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723

S.M. Sehgal Foundation Endowment Fund, ICRISAT

Saskatchewan Agriculture Development Fund

Saskatchewan Agriculture Development Fund (ADF)

Saskatchewan Innovation and Opportunity Scholarship

Rezaei, M K and Deokar, A A and Arganosa, G and Roorkiwal, M and Pandey, S K and Warkentin, T D and Varshney, R K and Tar′an, B (2019) Mapping Quantitative Trait Loci for Carotenoid Concentration in Three F2 Populations of Chickpea. The Plant Genome (TSI), 12 (3). pp. 1-12. ISSN 1940-3372

Saskatchewan Pulse Growers

Science Engineering Research Board (SERB)

Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322

Science and Engineering Research Board

Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372

Science and Engineering Research Board (SERB)

Science and Engineering Research Board (SERB), Government of India

Science and Technology Planning Project of Guangdong Province (2011B010500019)

Science and Technology Planning Project of Guangdong Province, Pearl River Science and Technology Nova of Guangzhou, National Natural Science Foundation of China, Natural Science Foundation of Guangdong Province, Modern Agro-industry Technology Research S

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

Science and Technology Planning Project(Guangdong Province)

Special Fund for Basic Scientific Research of Central Public Welfare Research Institutes

Syngenta Foundation for Sustainable Agriculture

Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.

Syngenta Foundation for the Sustainable Agriculture

The Bill & Melinda Gates Foundation (Tropical Legumes I & II)

The Central Public-Interest Scientific Institution Basal Research Fund

The Georgia Peanut Commission

The Government of Japan

The Indian Council of Agricultural Research (ICAR), New Delhi

Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864

The Innovation Program of the Chinese Academy of Agricultural Sciences

The Jiangxi Agriculture Research System

The National Key Research and Development Program of China

The Peanut Foundation

The Saskatchewan Ministry of Agriculture

The Science and technology innovation Project of Chinese Academy of Agricultural Sciences.

The Sehgal Foundation Endowment Fund

Sharma, R and Thakur, R P and Senthilvel, S and Nayak, S N and Veera Reddy, S and Rao, V P and Varshney, R K (2011) Identification and Characterization of Toxigenic Fusaria Associated with Sorghum Grain Mold Complex in India. Mycopathologia, 171. pp. 223-230.

Theme Leader Discretionary Grant from CGIARGeneration Challenge Programme (GCP)

This research was funded by Bill and Melinda Gates Foundation, grant number OPP1114827

Akpo, E and Feleke, G and Fikre, A and Chichaybelu, M and Ojiewo, C O and Varshney, R K (2020) Analyzing Pathways of Nurturing Informal Seed Production into Formal Private Ventures for Sustainable Seed Delivery and Crop Productivity: Experiences from Ethiopia. Sustainability, 12 (6828). pp. 1-18.

This research was partially supported by funds provided by the USDA Agricultural Research Service, the Georgia Agricultural Commodity Commission for Peanuts, Peanut Foundation and National Peanut Board.

Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203

This research was supported by the CGIAR Research Programme on Dryland systems and Dryland Cereals lead by ICRISAT

Gumma, M K and Kumara Charyulu, D and Mohammed, I and Varshney, R K and Gaur, P M and Whitbread, A M (2016) Satellite imagery and household survey for tracking chickpea adoption in Andhra Pradesh, India. International Journal of Remote Sensing, 37 (08). pp. 1955-1972. ISSN 1366-5901

This study was undertaken as a part of Tropical Legumes I (TLI- Objective 1: Groundnut) funded by Bill & Melinda Gates Foundation (BMGF) through CGIAR Generation Challenge Programme (http://www.generationcp.org/) and The Peanut Foundation, USA

Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203

This work was supported by the Bill and Melinda Gates Foundation (BMGF).

Akpo, E and Muricho, G and Lukurugu, G A and Opie, H and Ojiewo, C O and Varshney, R K (2020) Legume seed production for sustainable seed supply and crop productivity: case of groundnut in Tanzania and Uganda. Journal of Crop Improvement (TSI). pp. 1-22. ISSN 1542-7528

This work was supported by the West Bengal State Department of Health and Family Welfare, India

Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662

Tropical Legume I Phase II Project of GCP

Tropical Legume III (TL-III) of Bill and Melinda Gates Foundation (BMGF)

Zongo, A and Khera, P and Sawadogo, M and Shasidhar, Y and Sriswathi, M and Vishwakarma, M K and Sankara, P and Ntare, B R and Varshney, R K and Pandey, M K and Desmae, H (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15. pp. 132-137. ISSN 2215017X

U.S. Department of Agriculture Agricultural Research Service (USDA-ARS)

U.S. Department of Agriculture, National Institute of Food and Agriculture, Hatch Capacity funds

US National Science Foundation

US National Science Foundation (NSF)

Kim, D H and Kaashyap, M and Rathore, A and Das, R A and Parupalli, S and Upadhyaya, H D and Gopalakrishnan, S and Gaur, P M and Singh, S and Kaur, J and Yasin, M and Varshney, R K (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 1-5. ISSN 0250-5991

USAID

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Sinha, P and Pazhamala, L T and Singh, V K and Saxena, R K and Krishnamurthy, L and Azam, S and Khan, A W and Varshney, R K (2016) Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 06 (1065). 01-10. ISSN 1664-462X

Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806

USDA Agricultural Research Service

USDA-NIFA-NNF

USDA/CSREES/Capacity Building Program

United Soybean Board and the Agricultural Experiment Station Project, USDA-NIFA

Ye, H and Roorkiwal, M and Valliyodan, B and Zhou, L and Chen, P and Varshney, R K and Nguyen, H T (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany (TSI), 69 (13). pp. 3267-3277. ISSN 0022-0957

United States Agency for International Development

United States Agency for International Development (USAID)

Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322

Bohra, A and Saxena, R K and Saxena, K B and Sameer Kumar, C V and Varshney, R K (2014) Advances in Pigeonpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 95-110. ISBN 978-1-4614-8370-0

Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649

United States Agency for International Development (USAID) & Department of Agriculture and Cooperation, Ministry of Agriculture, Government of India

Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322

United States Agency for International Development (USAID) and Biotechnology Industry Partnership Programme (BIPP)

Sinha, P and Saxena, R K and Singh, V K and Krishnamurthy, L and Varshney, R K (2015) Selection and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) under Heat and Salt Stress Conditions. Frontiers in Plant Science, 6 (1071). 01-10. ISSN 1664-462X

United States Agency for International Development (USAID); Biotechnology Industry Partnership Programme (BIPP), Department of Biotechnology, Government of India, Science and Engineering Research Board (SERB), Government of India, and ICRISAT

Varshney, R K and Saxena, R K and Jackson, S A (2017) The Pigeonpea Genome. Compendium of Plant Genomes . Springer International Publishing, pp. 1-4. ISBN 978-3-319-63795-2

United States Agency for International Development (USAID)—India Mission and Department of Agriculture and Cooperation, Ministry of Agriculture & Farmers Welfare, Government of India

Saxena, R K and Obala, J and Sinjushin, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784. ISSN 0040-5752

University of Cordoba and National Institute for Agricultural and Food Research and Technology

University of Western Australia

University of Western Australia, Australia

University of Western Australia, Perth, Australia and DST India

Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X

Worldwide University Network (WUN); BBSRC, Grant/Award Number: BB/N004914/1; ARC, Grant/Award Numbers: DP150103211 and DP130102266; Hermon Slade Foundation, Grant/Award Number: DP130103084; Vice‐ Chancellor Discretionary Fund, Grant/Award Number: VCF20150

Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791

Youth Chenguang Project of Science and Technology of Wuhan City

the state of Saxony-Anhalt.

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