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Gopalakrishnan, S and Sathya, A and Vijayabharathi, R and Varshney, R K and Gowda, C L L and Krishnamurthy, L (2015) Plant growth promoting rhizobia: challenges and opportunities. 3 Biotech, 5 (4). pp. 355-377. ISSN 2190-5738
Varshney, R K and Langridge, P and Graner, A (2007) Application of Genomics to Molecular Breeding of Wheat and Barley. In: Advances in Genetics. Elsevier, Amsterdam, UK, pp. 121-155. ISBN 978-0-12-374621-4
Mudaraddi, B and Saxena, K B and Saxena, R K and Varshney, R K (2013) Molecular diversity among wild relatives of Cajanus cajan (L.) Millsp. African Journal of Biotechnology, 12 (24). pp. 3797-3801. ISSN 1684-5315
Sharma, M and Ghosh, R and Krishnan, R R and Nagamangala, U N and Chamarthi, S K and Varshney, R K and Pande, S (2012) Molecular and morphological diversity in Rhizoctonia bataticola isolates causing dry root rot of chickpea (Cicer arietinum L.) in India. African Journal of Biotechnology, 11 (37). pp. 8949-8959. ISSN 1684–5315
Sharma, M and Varshney, R K and Rao, J N and Kannan, S and Hoisington, D A and Pande, S (2009) Genetic diversity in Indian isolates of Fusarium oxysporum f. sp. ciceris, chickpea wilt pathogen. African Journal of Biotechnology, 8 (6). pp. 1016-1023.
Ndossi, J and Akpo, E and Ojiewo, C O and Ringo, J and Kongola, E and Vernooy, R and Muricho, G and Lukurugu, G A and Makoye, L N and Tabo, R and Varshney, R K (2021) Delineating investment opportunities for stakeholders in sorghum seed systems: a logit model perspective. Agriculture & Food Security (TSI), 10 (1). pp. 1-13. ISSN 2048-7010
Gaur, P M and Jukanti, A.K. and Varshney, R K (2012) Impact of Genomic Technologies on Chickpea Breeding Strategies. Agronomy, 2. pp. 199-221. ISSN 2073-4395
Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395
Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395
Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395
Parmar, S and Deshmukh, D B and Kumar, R and Manohar, S S and Joshi, P and Sharma, V and Chaudhari, S and Variath, M T and Gangurde, S S and Bohar, R and Singam, P and Varshney, R K and Janila, P and Pandey, M K (2021) Single Seed-Based High-Throughput Genotyping and Rapid Generation Advancement for Accelerated Groundnut Genetics and Breeding Research. Agronomy (TSI), 11 (6). pp. 1-15. ISSN 2073-4395
Mwalongo, S and Akpo, E and Lukurugu, G A and Muricho, F and Vernooy, R and Minja, A and Ojiewo, C and Njuguna, E and Otieno, G and Varshney, R K (2020) Factors Influencing Preferences and Adoption of Improved Groundnut Varieties among Farmers in Tanzania. Agronomy (TSI), 10 (1271). pp. 1-15. ISSN 2073-4395
Saxena, R K and Hake, A and Hingane, A J and Kumar, C V S and Bohra, A and Sonnappa, M and Rathore, A and Kumar, A V and Mishra, A and Tikle, A N and Sudhakar, C and Rajamani, S and Patil, D K and Singh, I P and Singh, N P and Varshney, R K (2020) Translational Pigeonpea Genomics Consortium for Accelerating Genetic Gains in Pigeonpea (Cajanus cajan L.). Agronomy (TSI), 10 (1289). pp. 1-17. ISSN 2073-4395
Saxena, R K (2010) Study of inheritance and identification of molecular markers for fertility restorers in pigeonpea [Cajanus cajan (L.) Millspaugh]. PHD thesis, International Crops Research Institute for the Semi-Arid Tropics .
Azam, S and Thakur, V and Ruperao, P. and Shah, T and Balaji, J and Amindala, B. and Farmer, A D and Studholme, D.J. and May, G D and Edwards, D. and Jones, J.D.G. and Varshney, R K (2012) Coverage-Based Consensus Calling (CBCC) Of Short Sequence Reads And Comparison Of CBCC Results To Identify SNPs In Chickpea ( Cicer Arietinum ; Fabaceae), A Crop Species Without A Reference Genome 1. American Journal of Botany, 99 (2). pp. 186-192. ISSN 1537-2197
Zhu, F and Han, J and Liu, S and Chen, X and Varshney, R K and Liang, X (2014) Cloning, Expression Pattern Analysis and Subcellular Localization of Resveratrol Synthase Gene in Peanut (Arachis hypogaea L.). American Journal of Plant Sciences, 5 (24). pp. 3619-3631. ISSN 2158-2750
Sharma, R and Rao, V P and Varshney, R K and Prasanth, V P and Kannan, S and Thakur, R P (2010) Characterisation of pathogenic and molecular diversity in Sclerospora graminicola, the causal agent of pearl millet downy mildew. Archives of Phytopathology and Plant Protection, 43 (6). pp. 538-551. ISSN 0323-5408
Obala, J and Saxena, R K and Singh, V K and Vechalapu, S and Das, R R and Rathore, A and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian journal of crop science, 12 (12). pp. 1859-1865. ISSN 1835-2707
Doddamani, D and Katta, M A V S K and Khan, A W and Agarwal, G and Shah, T M and Varshney, R K (2014) CicArMiSatDB: the chickpea microsatellite database. BMC Bioinformatics, 15 (212). pp. 1-7. ISSN 1471-2105
Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105
Pandey, M K and Wang, M L and Qiao, L and Feng, S and Khera, P and Wang, H and Tonnis, B and Barkley, N A and Wang, J and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2014) Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics, 15 (133). pp. 1-14. ISSN 1471-2156
Liu, N and Huang, L and Chen, W and Wu, B and Pandey, M K and Luo, H and Zhou, X and Guo, J and Chen, H and Huai, D and Chen, Y and Lei, Y and Liao, B and Ren, X and Varshney, R K and Jiang, H (2020) Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping. BMC Genetics (TSI), 21 (1). pp. 1-12. ISSN 1471-2156
Yu, B and Huai, D and Huang, L and Kang, Y and Ren, X and Chen, Y and Zhou, X and Luo, H and Liu, N and Chen, W and Lei, Y and Pandey, M K and Sudini, H and Varshney, R K and Liao, B and Jiang, H (2019) Identification of genomic regions and diagnostic markers for resistance to aflatoxin contamination in peanut (Arachis hypogaea L.). BMC Genetics (TSI), 20 (1). pp. 1-13. ISSN 1471-2156
Luo, H and Ren, X and Li, Z and Xu, Z and Li, X and Huang, L and Zhou, X and Chen, Y and Chen, W and Lei, Y and Liao, B and Pandey, M K and Varshney, R K and Guo, B and Jiang, X and Liu, F and Jiang, H (2017) Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics, 18 (58). pp. 1-12. ISSN 1471-2164
Williams, A H and Sharma, M and Thatcher, L F and Azam, S and Hane, J K and Sperschneider, J and Kidd, B N and Anderson, J P and Ghosh, R and Garg, G and Lichtenzveig, J and Kistler, H C and Shea, T and Young, S and Buck, S G and Kamphuis, L G and Saxena, R K and Pande, S and Ma, L J and Varshney, R K and Singh, K B (2016) Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics, 17 (191). 01-24. ISSN 1471-2164
Sharma, M and Nagavardhini, A and Thudi, M and Ghosh, R and Pande, S and Varshney, R K (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (454). pp. 1-14. ISSN 1471-2164
Rajaram, V and Nepolean, T and Senthilvel, S and Varshney, R K and Vadez, V and Srivastava, R K and Shah, T M and Supriya, A and Kumar, S and Kumari, B R and Bhanuprakash, A and Narasu, M L and Riera-Lizarazu, O and Hash, C T (2013) Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs. BMC Genomics, 14 (159). pp. 1-15.
Close, T J and Bhat, P R and Stefano, L and Wu, Y and Nils, R and Luke, R and Arnis, D and Nils, S and Svensson, J T and Steve, W and Serdar, B and Roose, M L and Moscou, M J and Shiaoman, C and Varshney, R K and et al, . (2009) Development and implementation of high-throughput SNPgenotyping in barley. BMC Genomics, 10 (582). 13p. ISSN 1471-2164
Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164
Dutta, B and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Delving into the lifestyle of Sundarban Wetland resident, biofilm producing, halotolerant Salinicoccus roseus: a comparative genomics-based intervention. BMC Genomics (TSI), 24. pp. 1-15. ISSN 1471-2164
Singh, S and Kudapa, H and Garg, V and Varshney, R K (2021) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops. BMC Genomics (TSI), 22 (1). pp. 1-23. ISSN 1471-2164
Saxena, R K and Molla, J and Yadav, P and Varshney, R K (2020) High resolution mapping of restoration of fertility (Rf) by combining large population and high density genetic map in pigeonpea [Cajanus cajan (L.) Millsp]. BMC Genomics (TSI), 21 (1). pp. 1-8. ISSN 1471-2164
Lu, Q and Hong, Y and Li, S and Liu, H and Li, H and Zhang, J and Lan, H and Liu, H and Li, X and Wen, S and Zhou, G and Varshney, R K and Jiang, H and Chen, X and Liang, X (2019) Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.). BMC Genomics (TSI), 20 (1). pp. 1-9. ISSN 1471-2164
Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164
Yadav, P and Saxena, K B and Hingane, A J and Sameer Kumar, C V and Kandalkar, V S and Varshney, R K and Saxena, R K (2019) An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea. BMC Genomics (TSI), 20 (1). pp. 1-10. ISSN 1471-2164
Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180
Thudi, M and Khan, A W and Kumar, V and Gaur, P M and Katta, K and Garg, V and Roorkiwal, M and Samineni, S and Varshney, R K (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (10). pp. 53-64. ISSN 1471-2229
Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229
Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229
Wang, H and Penmetsa, R V and Yuan, M and Varshney, R K and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-3. ISSN 1471-2229
Bohra, A and Dubey, A and Saxena, R K and Penmetsa, R V and Poornima, K N and Kumar, N and Farmer, A D and Srivani, G and Upadhyaya, H D and Gothalwal, R and Ramesh, S and Singh, D and Saxena, K B and Kishor, P B K and Singh, N K and Town, C D and May, G D and Cook, D R and Varshney, R K (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology, 11 (56). pp. 1-15. ISSN 1471-2229
Deokar, A A and Kondawar, V and Jain, P K and Karuppayil, S M and Raju, N L and Vadez, V and Varshney, R K and Srinivasan, R (2011) Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress. BMC Plant Biology, 11 (70).
Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229
Ravi, K and Upadhyaya, H D and Dwivedi, S L and Hoisington, D A and Varshney, R K (2010) Genetic relationships among seven sections of genus Arachis studied by using SSR markers. BMC Plant Biology, 10 (15). pp. 1-12.
Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).
Raju, N K and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P J and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discoveryand marker development in pigeonpea(Cajanus cajan L.). BMC Plant Biology, 10. pp. 45-66. ISSN 14712229
Leal-Bertioli, S C M and Jose, A C V F and Alves-Freitas, D M T and Moretzsohn, M C and Guimaraes, P M and Nielen, S and Vidigal, B S and Pereira, R W and Pike, J and Favero, A P and Parniske, M and Varshney, R K and Bertioli, D J (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9 (112). pp. 1-12.
Upadhyaya, H D and Dwivedi, S L and Baum, M and Varshney, R K and Udupa, S M and Gowda, C L L and Hoisington, D A and Singh, Sube (2008) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology, 8 (106). pp. 1-12.
Cuc, L M and Mace, E S and Crouch, J H and Quang, V D and Long, T D and Varshney, R K (2008) Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 8 (55). pp. 1-11.
Castillo, A and Budak, H and Varshney, R K and Dorado, G and Graner, A and Hernandez, P (2008) Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology, 8 (97). pp. 1-10.
Pandey, M K and Gangurde, S S and Shasidhar, Y and Sharma, V and Kale, S M and Khan, A W and Shah, P and Joshi, P and Bhat, R S and Janila, P and Bera, S K and Varshney, R K (2024) High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut. BMC Plant Biology (TSI), 24. pp. 1-16. ISSN 1471-2229
Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229
Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229
Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology (TSI), 18(1) (29). pp. 1-18. ISSN 1471-2229
Gayathri, M and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2018) Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.). BMC Research Notes, 11 (1) (10). pp. 1-6. ISSN 1756-0500
Jayashree, B and Prakash, A B and Jami, A and Reddy, P S and Nayak, S N and Varshney, R K (2009) Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes, 2. pp. 1-5.
Varshney, R K (2015) Young researchers need to focus more on agriculture : Interview of Dr. R K Varshney. Bio Spectrum, 13 (11-12). pp. 78-79.
Bohar, R and Chitkineni, A and Varshney, R K (2020) Genetic molecular markers to accelerate genetic gains in crops. BioTechniques (TSI), 69 (9). pp. 1-3. ISSN 0736-6205
Kabiraj, A and Halder, U and Panja, A S and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Detailed genomic and biochemical characterization and plant growth promoting properties of an arsenic-tolerant isolate of Bacillus pacificus from contaminated groundwater of West Bengal, India. Biocatalysis and Agricultural Biotechnology (TSI), 52. ISSN 1878-8181
Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737
Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762
Hoisington, D A and Varshney, R K (2007) Diversity Arrays Technology (DArT) Low Cost, Generic Molecular Markers for Breeding and Research. Biotech News, 2 (1). pp. 6-8.
Singh, R and Sharma, P and Varshney, R K and Sharma, S K and Singh, N K (2008) Chickpea Improvement: Role of Wild Species and Genetic Markers. Biotechnology & Genetic Engineering Reviews, 25. pp. 267-314.
Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750
Pandey, M K and Monyo, E and Ozias-Akins, P and Liang, X and Guimaraes, P and Nigam, S N and Upadhyaya, H D and Janila, P and Zhang, X and Guo, B and Cook, D R and Bertioli, D J and Michelmore, R and Varshney, R K (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances, 30 (3). pp. 639-651. ISSN 0734-9750
Zongo, A and Khera, P and Sawadogo, M and Shasidhar, Y and Sriswathi, M and Vishwakarma, M K and Sankara, P and Ntare, B R and Varshney, R K and Pandey, M K and Desmae, H (2017) SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut ( Arachis hypogaea L.). Biotechnology Reports, 15. pp. 132-137. ISSN 2215017X
Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382
Saxena, K B and Choudhary, A K and Saxena, R K and Varshney, R K (2018) Breeding pigeonpea cultivars for intercropping: synthesis and strategies. Breeding Science (TSI), 68 (2). pp. 159-167. ISSN 1344-7610
Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649
Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647
Varshney, R K and May, G D (2012) Next-generation sequencing technologies: opportunities and obligations in plant genomics. Briefings in Functional Genomics, 11 (1). pp. 1-2. ISSN 2041-2647
Rai, R K and Kumar, S S and Gupta, S S and Parasannanavar, D J and Anish, T S N and Barik, A and Varshney, R K and Rajkumar, H (2022) Shooting shadows: India’s struggle to reduce the burden of anaemia. British Journal of Nutrition, 129. pp. 416-427. ISSN 1475-2662
Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409
Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642
Jayashree, B and Hanspal, M S and Srinivasan, R and Vigneshwaran, R and Varshney, R K and Spurthi, N and Eshwar, K and Ramesh, N and Chandra, S and Hoisington, D A (2007) An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms. Comparative and Functional Genomics (35604). pp. 1-7. ISSN 1531-6912
Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551
Raza, A and Tabassum, J and Kudapa, H and Varshney, R K (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology (TSI). pp. 1-24. ISSN 0738-8551
Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689
Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689
Sharma, S and Pandey, M K and Sudini, H and Upadhyaya, H D and Varshney, R K (2017) Harnessing Genetic Diversity of Wild Arachis Species for Genetic Enhancement of Cultivated Peanut. Crop Science, 57 (3). pp. 1121-1131. ISSN 0011-183X
Hickey, J M and Gorjanc, G and Varshney, R K and Nettelblad, C (2015) Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov model. Crop Science, 55. pp. 1-13. ISSN 0011-183X
Upadhyaya, H D and Dwivedi, S L and Vadez, V and Hamidou, F and Singh, S and Varshney, R K and Liao, B (2014) Multiple Resistant and Nutritionally Dense Germplasm Identified from Mini Core Collection in Peanut. Crop Science, 54 (2). pp. 679-693. ISSN 1435-0653
Upadhyaya, H D and Dronavalli, N and Dwivedi, S L and Kashiwagi, J and Krishnamurthy, L and Pande, S and Sharma, H C and Vadez, V and Singh, S and Varshney, R K and Gowda, C L L (2013) Mini Core Collection as a Resource to Identify New Sources of Variation. Crop Science, 53 (6). pp. 2506-2517. ISSN 1435-0653
Mir, R R and Thudi, M and Chamarthi, S K and Krishnamurthy, L and Gaur, P M and Varshney, R K (2012) Translational Root Genomics for Crop Improvement. In: Root Genomics and Soil Interactions. John Wiley & Sons, Inc., USA, pp. 249-264. ISBN 9781118447093
Saxena, K B and Sultana, R and Saxena, R K and Kumar, R V and Sandhu, J S and Rathore, A and Kavi Kishor, P B and Varshney, R K (2011) Genetics of Fertility Restoration in A4-Based, Diverse Maturing Hybrids of Pigeonpea [Cajanus cajan (L.) Millsp.]. Crop Science, 51. pp. 574-578. ISSN 0011-183X
Singh, S and Gupta, S K and Thudi, M and Das, R R and Anil Kumar, V and Garg, V and Varshney, R K and Rathore, A and Pahuja, S K and Yadav, D V (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet. Crop Science (TSI), 58 (6). pp. 2379-2390. ISSN 0011-183X
Sachdeva, S and Bharadwaj, C and Sharma, V and Patil, B S and Soren, K R and Roorkiwal, M and Varshney, R K and Bhat, K V (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop and Pasture Science, 69 (2). pp. 142-153. ISSN 1836-0947
Sefera, T and Abebie, B and Gaur, P M and Assefa, K and Varshney, R K (2011) Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62 (2). pp. 177-187. ISSN 1836-5795
Glaszmann, J C and Kilian, B and Upadhyaya, H D and Varshney, R K (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology, 13 (2). pp. 167-173. ISSN 1369-5266
Cook, D R and Varshney, R K (2010) From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology, 13 (2). pp. 115-118.
Varshney, R K and Close, T J and Singh, N K and Hoisington, D A and Cook, D R (2009) Orphan legume crops enter the genomics era! Current Opinion in Plant Biology, 12 (2). pp. 202-210. ISSN 1369-5266
Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266
Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266
Palit, P and Kudapa, H and Zougmore, R and Kholova, J and Whitbread, A M and Sharma, M and Varshney, R K (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22. pp. 1-12. ISSN 2214-6628
Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299
Borner, A and Roder, M S and Chebotar, S and Varshney, R K and Weinder, A (2005) Molecular Tools for Genebank Management and Evaluation. Czech Journal of Genetics and Plant Breeding(Special Issue), 41. pp. 122-127. ISSN 1212-1975
Tuteja, R and Saxena, R K and Davila, J and Shah, T and Chen, W and Xiao, Y-L and Fan, G and Saxena, K B and Alverson, A J and Spillane, C and Town, C and Varshney, R K (2013) Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes. DNA Research, 20 (5). pp. 485-495. ISSN 1756-1663
Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663
Saxena, R K and Penmetsa, R V and Upadhyaya, H D and Kumar, Ashish and Varshney, R K and et al, . (2012) Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes. DNA Research. pp. 1-13. ISSN 1756-1663
Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663
Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463
Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818
Majhi, K and Let, M and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. Environmental Research (TSI), 223. ISSN 0013-9351
Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472
Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506
Fikre, A and Korbu, L and Eshete, M and Bekele, D and Girma, N and Mohamed, R and Assefe, S and Admasu, D and Tilahun, G and Tesfaye, T and Kefelegn, N and Tadesse, T and Rezene, Y and Moges, Y and Kumar, S and Bishaw, Z and Guar, P M and Varshney, R K and Ahmed, S (2018) A Decade of Research Progress in Chickpea and Lentil Breeding and Genetics. Ethiopian Journal of Crop Science, 6 (3). pp. 101-113. ISSN 2072-8506
Akinlade, O J and Voss-Fels, K and Costilla, R and Kholova, J and Choudhary, S and Varshney, R K and Hickey, L T and Smith, M R (2022) Designing chickpea for a hotter drier world. Euphytica, 218. pp. 1-16. ISSN 1573-5060
Tayade, A T and Motagi, B N and Jadhav, M P and Nadaf, A S and Koti, R V and Gangurde, S S and Sharma, V and Varshney, R K and Pandey, M K and Bhat, R S (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218. pp. 1-10. ISSN 1573-5060
Samineni, S and Kamatam, S and Thudi, M and Varshney, R K and Gaur, P M (2016) Vernalization response in chickpea is controlled by a major QTL. Euphytica, 207 (2). pp. 453-461. ISSN 0014-2336
Gaur, P M and Singh, M K and Samineni, S and Sajja, S and Jukanti, A K and Kamatam, S and Varshney, R K (2016) Inheritance of protein content and its relationships with seed size, grain yield and other traits in chickpea. Euphytica, 209. pp. 253-260. ISSN 1573-5060
Kolekar, R M and Sujay, V and Shirasawa, K and Sukruth, M and Khedikar, Y P and Gowda, M V C and Pandey, M K and Varshney, R K and Bhat, R S (2016) QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica, 209 (1). pp. 147-156. ISSN 0014-2336
Khera, P and Saxena, R K and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2015) Mitochondrial SSRs and their utility in distinguishing wild species, CMS lines and maintainer lines in pigeonpea (Cajanus cajan L.). Euphytica. pp. 1-10. ISSN 1573-5060
Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336
Srikanth, S and Saxena, R K and Rao, M V and Varshney, R K and Mallikarjuna, N (2015) Development of a new CMS system in pigeonpea utilizing crosses with Cajanus lanceolatus (WV Fitgz) van der Maesen. Euphytica, 204 (02). pp. 289-302. ISSN 1573-5060
Faye, I and Pandey, M K and Hamidou, F and Rathore, A and Ndoye, O and Vadez, V and Varshney, R K (2015) Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal. Euphytica, 206 (3). pp. 631-647. ISSN 1573-5060
Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060
Gaur, P M and Samineni, S and Tripathi, S and Varshney, R K and Gowda, C L L (2015) Allelic relationships of flowering time genes in chickpea. Euphytica, 203 (2). pp. 295-308. ISSN 0014-2336
Sukruth, M and Paratwagh, S A and Sujay, V and Kumari, V and Gowda, M V C and Nadaf, H L and Motagi, B N and Lingaraju, S and Pandey, M K and Varshney, R K and Bhat, R S (2015) Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica, 204 (2). pp. 343-351. ISSN 0014-2334
Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Varshney, R K and Parzies, H K (2014) Population structure and linkage disequilibrium of ICRISAT foxtail millet (Setaria italica (L.) P. Beauv.) core collection. Euphytica, 196 (3). pp. 423-435. ISSN 1573-5060
Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060
Saxena, K B and Saxena, R K and Kumar, R V and Varshney, R K (2012) Evidence of a unique inter-allelic epistatic interaction for seed coat color in pigeonpea [Cajanus cajan (L.) Millspaugh]. Euphytica, 186 (3). pp. 813-816. ISSN 1573-5060
Saxena, K B and Kumar, R V and Saxena, R K and Sharma, M and Srivastava, R K and Sultana, R and Varshney, R K and Vales, M I and Pande, S (2012) Identification of dominant and recessive genes for resistance to Fusarium wilt in pigeonpea and their implication in breeding hybrids. Euphytica, 188 (2). pp. 221-227. ISSN 1573-5060
Anuradha, C and Gaur, P M and Pande, S and Gali, K K and Ganesh, M and Kumar, J and Varshney, R K (2011) Mapping QTL for resistance to botrytis grey mould in chickpea. Euphytica, 182 (1). pp. 1-9. ISSN 0014-2336
Bhardwaj, R and Sandhu, J S and Kaur, L and Gupta, S K and Gaur, P M and Varshney, R K (2010) Genetics of ascochyta blight resistance in chickpea. Euphytica, 171 (3). pp. 337-343. ISSN 1573-5060
Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336
Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336
Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336
Rathnakumar, A L and Manohar, S S and Nadaf, H L and Patil, S C and Deshmukh, M P and Thirumalaisamy, P P and Kumar, N and Lalwani, H B and Nagaraju, P and Yenagi, B and Patil, S S and Suryawanshi, J and Khatod, J and Kumbhar, C T and Kathmale, D K and Naik, K S S and Rajesh, P and Vemana, K and Sundaravadana, S and Premalatha, N and Variath, M T and Chaudhari, S and Radhakrishnan, T and Pandey, M K and Varshney, R K and Janila, P (2020) G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica (TSI), 216 (6). pp. 1-20. ISSN 0014-2336
Saxena, K B and Saxena, R K and Hickey, L T and Varshney, R K (2019) Can a speed breeding approach accelerate genetic gain in pigeonpea? Euphytica (TSI), 215 (12). pp. 1-7. ISSN 0014-2336
Saxena, K B and Saxena, R K and Sharma, S and Sameer Kumar, C V and Sultana, R and von Wettberg, E B and Varshney, R K (2018) The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Euphytica (TSI), 214 (12). pp. 1-20. ISSN 0014-2336
Bera, S K and Kamdar, J H and Kasundra, S V and Dash, P and Maurya, A K and Jasani, M D and Chandrashekar, A B and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K (2018) Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica (TSI), 214 (9). pp. 1-15. ISSN 0014-2336
Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336
Paul, P J and Samineni, S and Sajja, S and Rathore, A and Das, R R and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Capturing genetic variability and selection of traits for heat tolerance in a chickpea recombinant inbred line (RIL) population under field conditions. Euphytica (TSI), 214(2) (27). pp. 1-27. ISSN 0014-2336
Ghosh, S and Palika, R and Dasi, T and Varshney, R K and Parasannanavar, D J and Gupta, S S and Chitikineni, A and Banjara, S K and Pullakhandam, R and Thomas, T and Sachdev, H S and Kurpad, A V and Kulkarni, B (2023) Haemoglobin diagnostic cut-offs for anaemia in Indian women of reproductive age. European Journal of Clinical Nutrition, 77. pp. 966-971. ISSN 1476-5640
Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research, 201. pp. 146-161. ISSN 03784290
Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2016) Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.). Field Crops Research, 197 (-). pp. 10-27. ISSN 03784290
Kashiwagi, J and Krishnamurthy, L and Purushothaman, R and Upadhyaya, H D and Gaur, P M and Gowda, C L L and Ito, O and Varshney, R K (2015) Scope for improvement of yield under drought through the root traits in chickpea (Cicer arietinum L.). Field Crops Research, 170 (-). pp. 47-54. ISSN 1872-6852
Purushothaman, R and Thudi, M and Krishnamurthy, L and Upadhyaya, H D and Kashiwagi, J and Gowda, C L L and Varshney, R K (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174. pp. 1-11. ISSN 0378-4290
Krishnamurthy, L and Kashiwagi, J and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Singh, Sube and Purushothaman, R and Varshney, R K (2013) Partitioning coefficient—A trait that contributes to drought tolerance in chickpea. Field Crops Research, 149. pp. 354-365. ISSN 0378-4290
Kashiwagi, J and Krishnamurthy, L and Gaur, P M and Upadhyaya, H D and Varshney, R K and Tobita, S (2013) Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.). Field Crops Research, 145 (1). pp. 88-95. ISSN 0378-4290
Varshney, R K and Paulo, M J and Grando, S and Eeuwijk, F A van and Keizer, L C P and Ceccarelli, S and Kilian, A and Baum, M and Graner, A (2012) Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Research, 126 (1). 171-180 . ISSN 0378-4290
Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.
Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.
Zeid, M and Yu, J K and Goldowitz, I and Denton, M E and Costich, D E and Jayasuriya, C T and Saha, M and Elshire, R and Benscher, D and Breseghello, F and Munkvold, J and Varshney, R K and Belay, G and Sorrells, M E (2010) Cross-amplification of EST-derived markers among 16 grass species. Field Crops Research, 118. pp. 28-35.
Vadez, V and Krishnamurthy, L and Serraj, R and Gaur, P M and Upadhyaya, H D and Hoisington, D A and Varshney, R K and Turner, N C and Siddique, K H M (2007) Large variation in salinity tolerance in chickpea is explained by differences in sensitivity at the reproductive stage. Field Crops Research, 104 (1-3). pp. 123-129. ISSN 0378-4290
Azhaguvel, P and Saraswathi, D V and Sharma, A and Varshney, R K (2006) Methodological Advancement in Molecular Markers to Delimit the Gene(s) for Crop Improvement. In: Floriculture, ornamental and plant biotechnology. Global Science Books, Isleworth, UK, pp. 460-469. ISBN 4-903313-00-X
Xiao, Y and Liu, H and Du, P and Liang, X and Li, H and Lu, Q and Li, S and Liu, H and Hong, Y and Varshney, R K and Chen, X (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379. ISSN 0308-8146
Xiao, Y and Liu, H and Lu, Q and Li, H and Liu, Q and Li, S and Liu, H and Varshney, R K and Liang, X and Hong, Y and Chen, X (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155. ISSN 0963-9969
Kumar, S and Das, A and Hauser, M and Muricho, G and Degefu, T and Fikre, A and Ojiewo, C and Ferede, S and Varshney, R K (2022) Estimating the potential to close yield gaps through increased efficiency of chickpea production in Ethiopia. Food Security, 14. pp. 1241-1258. ISSN 1876-4525
Pamala, P J and Jayalakshmi, R S and Vemana, K and Naidu, G M and Varshney, R K and Sudini, H K (2023) Prevalence of groundnut dry root rot (Macrophomina phaseolina (Tassi) Goid.) and its pathogenic variability in Southern India. Frontiers in Fungal Biology, 4. 01-16. ISSN 2673-6128
Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021
Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021
Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021
Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021
Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021
Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021
Pandey, A K and Sudini, H and Upadhyaya, H D and Varshney, R K and Pandey, M K (2019) Hypoallergen Peanut Lines Identified Through Large-Scale Phenotyping of Global Diversity Panel: Providing Hope Toward Addressing One of the Major Global Food Safety Concerns. Frontiers in Genetics (TSI), 10 (1177). pp. 1-15. ISSN 1664-8021
Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X
Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X
Sab, S and Lokesha, R and Mannur, D M and Somasekhar, S and Jadhav, K and Mallikarjuna, B P and Laxuman, C and Yeri, S and Valluri, V and Bajaj, P and Chitikineni, A and Vemula, A K and Rathore, A and Varshney, R K and Shankergoud, I and Thudi, M (2020) Genome-Wide SNP Discovery and Mapping QTLs for Seed Iron and Zinc Concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition (TSI), 7 (559120). pp. 1-9. ISSN 2296-861X
Pandey, A K and Varshney, R K and Sudini, H K and Pandey, M K (2019) An Improved Enzyme-Linked Immunosorbent Assay (ELISA) Based Protocol Using Seeds for Detection of Five Major Peanut Allergens Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8. Frontiers in Nutrition (TSI), 6 (68). pp. 1-11. ISSN 2296-861X
Janila, P and Nigam, S N and Pandey, M K and Nagesh, P and Varshney, R K (2013) Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Genetics and Genomic, 4 (23). pp. 1-16.
Upadhyaya, H D and Kashiwagi, J and Varshney, R K and Gaur, P M and Saxena, K B and Krishnamurthy, L and Gowda, C L L and Pundir, R P S and et al, . (2012) Phenotyping chickpeas and pigeonpeas for adaptation to drought. Frontiers in Plant Physiology, 3 (179). pp. 1-10.
Yadav, O P and Gupta, S K and Govindaraj, M and Sharma, R and Varshney, R K and Srivastava, R K and Rathore, A and Mahala, R S (2021) Genetic Gains in Pearl Millet in India: Insights Into Historic Breeding Strategies and Future Perspective. Frontiers in Plant Science, 12 (645038). pp. 1-15. ISSN 1664-462X
Vishwakarma, M K and Kale, S M and Sriswathi, M and Naresh, T and Shasidhar, Y and Garg, V and Pandey, M K and Varshney, R K (2017) Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis. Frontiers in Plant Science, 8 (2064). pp. 1-13. ISSN 1664-462X
Zhao, J and Huang, L and Ren, X and Pandey, M K and Wu, B and Chen, Y and Zhou, X and Chen, W and Xia, Y and Li, Z and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2017) Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers. Frontiers in Plant Science, 8 (2105). pp. 1-13. ISSN 1664-462X
Sita, K and Sehgal, A and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Kumar, S and Gaur, P M and Farroq, M and Siddique, K H M and Varshney, R K and Nayyar, H (2017) Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance. Frontiers in Plant Science, 8 (1658). pp. 1-30. ISSN 1664-462X
Zhao, C and Qiu, J and Agarwal, G and Wang, J and Ren, X and Xia, H and Guo, B and Ma, C and Wan, S and Bertioli, D J and Varshney, R K and Pandey, M K and Wang, X (2017) Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Frontiers in Plant Science, 8 (1209). pp. 1-12. ISSN 1664-462X
Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 (1140). pp. 1-10. ISSN 1664-462X
Iquebal, M A and Soren, K R and Gangwar, P and Shanmugavadivel, P S and Aravind, K and Singla, D and Jaiswal, S and Jasrotia, R S and Chaturvedi, S K and Singh, N P and Varshney, R K and Rai, A and Kumar, D (2017) Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. Frontiers in Plant Science, 8 (958). pp. 1-12. ISSN 1664-462X
Shasidhar, Y and Vishwakarma, M K and Pandey, M K and Janila, P and Variath, M T and Manohar, S S and Nigam, S N and Guo, B and Varshney, R K (2017) Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (794). pp. 1-14. ISSN 1664-462X
Garg, V and Agarwal, G and Pazhamala, L T and Nayak, S N and Kudapa, H and Khan, A W and Doddamani, D and Sharma, M and Kavi Kishor, P B and Varshney, R K (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Frontiers in Plant Science, 8 (488). pp. 1-16. ISSN 1664-462X
Pandey, M K and Wang, H and Khera, P and Vishwakarma, M K and Kale, S M and Culbreath, A K and Holbrook, C C and Wang, X and Varshney, R K and Guo, B (2017) Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science, 8 (25). pp. 1-12. ISSN 1664-462X
Hima Kumari, P and Anil Kumar, S and Sivan, P and Katam, R and Suravajhala, P and Rao, K S and Varshney, R K and Kavi Kishor, P B (2017) Overexpression of a Plasma Membrane Bound Na+/H+ Antiporter-Like Protein (SbNHXLP) Confers Salt Tolerance and Improves Fruit Yield in Tomato by Maintaining Ion Homeostasis. Frontiers in Plant Science, 7 (2027). pp. 1-15. ISSN 1664-462X
Hradilova, I and Trneny, O and Valkova, M and Cechova, M and Janska, A and Prokesova, L and Khan, A W and Krezdorn, N and Rotter, B and Winter, P and Varshney, R K and Soukup, A and Bednar, P and Hanacek, P and Smykal, P (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). Frontiers in Plant Science, 8 (542). pp. 1-25. ISSN 1664-462X
Bohra, A and Jha, R and Pandey, G and Patil, P G and Saxena, R K and Singh, I P and Singh, D and Mishra, R K and Mishra, A and Singh, F and Varshney, R K and Singh, N P (2017) New Hypervariable SSR Markers for Diversity Analysis, Hybrid Purity Testing and Trait Mapping in Pigeonpea [Cajanus cajan (L.) Millspaugh]. Frontiers in Plant Science, 8 (377). pp. 1-15. ISSN 1664-462X
Roorkiwal, M and Rathore, A and Das, R R and Singh, M K and Jain, A and Samineni, S and Gaur, P M and Chellapilla, B and Tripathi, S and Li, Y and Hickey, J M and Lorenz, A and Sutton, T and Crossa, J and Jannink, J L and Varshney, R K (2016) Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, 7 (1666). 01-13. ISSN 1664-462X
Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X
Chen, W and Yao, Q and Patil, G B and Agarwal, G and Deshmukh, R K and Lin, L and Wang, B and Wang, Y and Prince, S J and Song, L and Xu, D and An, Y C and Valliyodan, B and Varshney, R K and Nguyen, H T (2016) Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). 01-19. ISSN 1664-462X
Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X
Janila, P and Variath, M T and Pandey, M K and Desmae, H and Motagi, B N and Okori, P and Manohar, S S and Rathnakumar, A L and Radhakrishnan, T and Liao, B and Varshney, R K (2016) Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Frontiers in Plant Science, 07 (289). 01-15. ISSN 1664-462X
Sinha, P and Pazhamala, L T and Singh, V K and Saxena, R K and Krishnamurthy, L and Azam, S and Khan, A W and Varshney, R K (2016) Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 06 (1065). 01-10. ISSN 1664-462X
Ramalingam, A and Kudapa, H and Pazhamala, L T and Garg, V and Varshney, R K (2015) Gene Expression and Yeast Two-Hybrid Studies of 1R-MYB Transcription Factor Mediating Drought Stress Response in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 (1117). 01-10. ISSN 1664-462X
Ramalingam, A and Kudapa, H and Pazhamala, L T and Weckwerth, W and Varshney, R K (2015) Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Frontiers in Plant Science, 6 (1116). 01-21. ISSN 1664-462X
Sinha, P and Saxena, R K and Singh, V K and Krishnamurthy, L and Varshney, R K (2015) Selection and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) under Heat and Salt Stress Conditions. Frontiers in Plant Science, 6 (1071). 01-10. ISSN 1664-462X
Hong, Y and Pandey, M K and Liu, Y and Chen, X and Liu, H and Varshney, R K and Liang, X and Huang, S (2015) Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Frontiers in Plant Science, 06 (1068). 01-10. ISSN 1664-462X
Saxena, R K and Saxena, K B and Pazhamala, L T and Patel, K and Parupalli, S and Sameer Kumar, C V and Varshney, R K (2015) Genomics for greater efficiency in pigeonpea hybrid breeding. Frontiers in Plant Science. ISSN 1664-462X
Kole, C and Muthamilarasan, M and Henry, R and Edwards, D and Sharma, R and Abberton, M and Batley, J and Bentley, A and Blakeney, M and Bryant, J and Cai, H and Cakir, M and Cseke, L J and Cockram, J and Oliveira, A C and Pace, C D and Dempewolf, H and Ellison, S and Gepts, P and Greenland, A and Hall, A and Hori, K and Hughes, S and Humphreys, M W and Iorizzo, M and Ismail, A M and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Simon, P W and Tohme, J and Tuberosa, R and Valliyodan, B and Varshney, R K and Wullschleger, S D and Yano, M and Prasad, M (2015) Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science. ISSN 1664-462X
Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X
Garg, R and Varshney, R K and Jain, M (2014) Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science, 5. ISSN 1664-462X
Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X
Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X
Kim, D H and Parupalli, S and Azam, S and Lee, S H and Varshney, R K (2013) Comparative sequence analysis of nitrogen fixation-related genes in six legumes. Frontiers in Plant Science, 4 (300). pp. 1-8.
Sharma, S and Upadhyaya, H D and Varshney, R K and Gowda, C L L (2013) Pre-breeding for diversification of primary gene pool and genetic enhancement of grain legumes. Frontiers in Plant Science, 4 (309). pp. 1-14. ISSN 1664-462X
Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X
Huai, D and Wu, J and Xue, X and Hu, M and Zhi, C and Pandey, M K and Liu, N and Huang, L and Bai, D and Yan, L and Chen, Y and Wang, X and Kang, Y and Wang, Z and Jiang, H and Lei, Y and Varshney, R K and Liao, B (2023) Red fluorescence protein (DsRed2) promotes the screening efficiency in peanut genetic transformation. Frontiers in Plant Science (TSI), 14. 01-11. ISSN 1664-462X
Liu, N and Wu, B and Pandey, M K and Huang, L and Luo, H and Chen, Y and Zhou, X and Chen, W and Huai, D and Yu, B and Chen, H and Guo, J and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2022) Gene expression and DNA methylation altering lead to the high oil content in wild allotetraploid peanut (A. monticola). Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X
Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X
Singh, S and Sharma, R and Nepolean, T and Nayak, S N and Pushpavathi, B and Khan, A W and Srivastava, R K and Varshney, R K (2022) Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq. Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X
Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X
Babele, P K and Kudapa, H and Singh, Y and Varshney, R K and Kumar, A (2022) Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X
Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X
Lu, Q and Liu, H and Hong, Y and Liang, X and Li, S and Liu, H and Li, H and Wang, R and Deng, Q and Jiang, H and Varshney, R K and Pandey, M K and Chen, X (2022) Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). Frontiers in Plant Science (TSI), 13. 01-11. ISSN 1664-462X
Srivastava, R K and Yadav, O P and Kaliamoorthy, S and Gupta, S K and Serba, D D and Choudhary, S and Govindaraj, M and Kholová, J and Murugesan, T and Satyavathi, C T and Gumma, M K and Singh, R B and Bollam, S and Gupta, R and Varshney, R K (2022) Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects. Frontiers in Plant Science (TSI), 13. pp. 1-20. ISSN 1664-462X
Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X
Doležalová, A and Sládeková, L and Šimoníková, D and Holušová, K and Karafiátová, M and Varshney, R K and Doležel, J and Hřibová, E (2022) Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting Fluorescence in situ Hybridization. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X
Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X
Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X
Govintharaj, P and Maheswaran, M and Blümmel, M and Sumathi, P and Vemula, A K and Rathore, A and Sivasubramani, S and Kale, S M and Varshney, R K and Gupta, S K (2021) Understanding Heterosis, Genetic Effects, and Genome Wide Associations for Forage Quantity and Quality Traits in Multi-Cut Pearl Millet. Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X
Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X
Zhou, X and Guo, J and Pandey, M K and Varshney, R K and Huang, L and Luo, H and Liu, N and Chen, W and Lei, Y and Liao, B and Jiang, H (2021) Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies. Frontiers in Plant Science (TSI), 12 (637284). pp. 1-14. ISSN 1664-462X
Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X
Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X
Santantonio, N and Atanda, S A and Beyene, Y and Varshney, R K and Olsen, M and Jones, E and Roorkiwal, M and Gowda, M and Bharadwaj, C and Gaur, P M and Zhang, X and Dreher, K and Ayala-Hernández, C and Crossa, J and Pérez-Rodríguez, P and Rathore, A and Gao, S Y and McCouch, S and Robbins, K R (2020) Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science (TSI), 11. ISSN 1664-462X
Ojiewo, C O and Janila, P and Bhatnagar-Mathur, P and Pandey, M K and Desmae, H and Okori, P and Mwololo, J K and Ajeigbe, H A and Njuguna-Mungai, E and Muricho, G and Akpo, E and Gichohi-Wainaina, W N and Variath, M T and Radhakrishnan, T and Dobariya, K L and Bera, S K and Rathnakumar, A L and Manivannan, N and Vasanthi, R P and Kumar, M V N and Varshney, R K (2020) Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 11. pp. 1-15. ISSN 1664-462X
Kumar, R and Pandey, M K and Roychoudhry, S and Nayyar, H and Kepinski, S and Varshney, R K (2019) Peg Biology: Deciphering the Molecular Regulations Involved During Peanut Peg Development. Frontiers in Plant Science (TSI), 10 (1289). pp. 1-17. ISSN 1664-462X
Zwart, R S and Thudi, M and Channale, S and Manchikatla, P K and Varshney, R K and Thompson, J P (2019) Resistance to Plant-Parasitic Nematodes in Chickpea: Current Status and Future Perspectives. Frontiers in Plant Science (TSI), 10 (966). pp. 1-14. ISSN 1664-462X
Sehgal, A and Sita, K and Siddique, K H M and Kumar, R and Bhogireddy, S and Varshney, R K and HanumanthaRao, B and Nair, R M and Vara Prasad, P V and Nayyar, H (2018) Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality. Frontiers in Plant Science (TSI), 9 (1705). pp. 1-19. ISSN 1664-462X
Shirasawa, K and Bhat, R S and Khedikar, Y P and Sujay, V and Kolekar, R M and Yeri, S B and Sukruth, M and Cholin, S and Asha, B and Pandey, M K and Varshney, R K and Gowda, M V C (2018) Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 9 (1727). pp. 1-8. ISSN 1664-462X
Lu, Q and Li, H and Hong, Y and Zhang, G and Wen, S and Li, X and Zhou, G and Li, S and Liu, H and Liu, H and Liu, Z and Varshney, R K and Chen, X and Liang, X (2018) Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). Frontiers in Plant Science (TSI), 9 (604). pp. 1-15. ISSN 1664-462X
Saeed, F and Chaudhry, U K and Raza, A and Charagh, S and Bakhsh, A and Bohra, A and Ali, S and Chitikineni, A and Saeed, Y and Visser, R G F and Siddique, K H M and Varshney, R K (2023) Developing future heat‑resilient vegetable crops. Functional & Integrative Genomics, 23. pp. 1-23. ISSN 1438-7948
Deokar, A A and Kondawar, V and Kohli, D and Aslam, M and Jain, P K and Karuppayil, S M and Varshney, R K and Srinivasan, R (2015) The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor. Functional & Integrative Genomics, 15 (1). pp. 27-46. ISSN (ISSN: 1438-793X, ESSN: 1438-7948)
Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948
Saxena, R K and Cui, X and Thakur, V and Walter, B and Close, T J and Varshney, R K (2011) Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.). Functional & Integrative Genomics, 11 (4). pp. 651-657.
Kota, R and Varshney, R K and Prasad, M and Zhang, H and Stein, N and Graner, A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional & Integrative Genomics, 8 (3). pp. 223-233. ISSN 1438-7948
Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X
Choudhary, M and Wani, S H and Kumar, P and Bagaria, P K and Rakshit, S and Roorkiwal, M and Varshney, R K (2019) QTLian breeding for climate resilience in cereals: progress and prospects. Functional & Integrative Genomics (TSI), 19 (5). pp. 685-701. ISSN 1438-793X
Purushothaman, R and Krishnamurthy, L and Upadhyaya, H D and Vadez, V and Varshney, R K (2017) Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology, 44. pp. 235-252. ISSN 1445-4408
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408
Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408
Krishnamurthy, L and Kashiwagi, J and Tobita, S and Ito, O and Upadhyaya, H D and Gowda, C L L and Gaur, P M and Sheshshayee, M S and Singh, Sube and Vadez, V and Varshney, R K (2013) Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm. Functional Plant Biology, 14 (12). pp. 1350-1361. ISSN 1445-4408
Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X
Fountain, J C and Clevenger, J P and Nadon, B and Youngblood, R C and Korani, W and Chang, P K and Starr, D and Wang, H and Isett, B and Johnston, H R and Wiggins, R and Agarwal, G and Chu, Y and Kemerait, R C and Pandey, M K and Bhatnagar, D and Ozias-Akins, P and Varshney, R K and Sheffler, B E and Vaughn, J N and Guo, B (2020) Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3: Genes | Genomes | Genetics (G3) (TSI), 10 (9). pp. 1-55. ISSN 2160-1836
Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836
Liang, Z and Gupta, S K and Yeh, C T and Zhang, Y and Ngu, D W and Kumar, R and Patil, H T and Mungra, K D and Yadav, D V and Rathore, A and Srivastava, R K and Gupta, R and Yang, J and Varshney, R K and Schnable, P S and Schnable, J C (2018) Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3: Genes, Genomes, Genetics (TSI), 8. pp. 2513-2522. ISSN 2160-1836
Pandey, M K and Gangurde, S S and Sharma, V and Pattanashetti, S K and Naidu, G K and Faye, I and Hamidou, F and Desmae, H and Kane, N A and Yuan, M and Vadez, V and Nigam, S N and Varshney, R K (2020) Improved Genetic Map Identified Major QTLs for Drought Tolerance- and Iron Deficiency Tolerance-Related Traits in Groundnut. Genes (TSI), 12 (1). pp. 1-22. ISSN 2073-4425
Hima Kumari, P and Anil Kumar, S and Ramesh, K and Reddy, P S and Nagaraju, M and Bhanu Prakash, A and Shah, T and Henderson, A and Srivastava, R K and Rajasheker, G and Chitikineni, A and Varshney, R K and Rathnagiri, P and Lakshmi Narasu, M and Kavi Kishor, P B (2018) Genome-Wide Identification and Analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor. Genes (TSI), 9 (5) (236). pp. 1-18. ISSN 2073-4425
Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109
Mallikarjuna, N and Saxena, K B and Lakshmi, J and Varshney, R K and Srikanth, S and Jadhav, D R (2012) Differences between Cajanus cajan (L.) Millspaugh and C. cajanifolius (Haines) van der Maesen, the progenitor species of pigeonpea. Genetic Resources and Crop Evolution, 59 (3). pp. 411-417. ISSN 1573-5109
Salem, K F M and Varshney, R K and Roder, M S and Borner, A (2010) EST-SSR based estimates on functional genetic variation in a barley (Hordeum vulgare L.) collection from Egypt. Genetic Resources and Crop Evolution, 57. pp. 515-525.
Chabane, K and Varshney, R K and Graner, A and Valkoun, J (2008) Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genetic Resources and Crop Evolution, 55 (6). pp. 869-881. ISSN 1573-5109
Daudi, H and Shimelis, H and Mathew, I and Oteng‐Frimpong, R and Ojiewo, C and Varshney, R K (2020) Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864
Kamdar, J H and Jasani, M D and Ajay, B C and Rani, K and Manivannan, N and Vasanthi, R P and Dobariya, K L and Pandey, M K and Janila, P and Radhakrishnan, T and Varshney, R K and Bera, S K (2020) Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution (TSI). ISSN 0925-9864
Jenko, J and Gorjanc, G and Cleveland, M A and Varshney, R K and Whitelaw, C B A and Woolliams, J A and Hickey, J M (2015) Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics Selection Evolution, 47 (55). pp. 1-34. ISSN 0999-193X
Halder, U and Banerjee, A and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2017) Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. Genome Announcements, 5 (23). pp. 1-2. ISSN 2169-8287
Banerjee, A and Halder, U and Chaudhry, V and Varshney, R K and Mantri, S and Bandopadhyay, R (2016) Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. Genome Announcements, 4 (6). pp. 1-2. ISSN 2169-8287
Wang, L and Yu, S and Tong, C and Zhao, Y and Liu, Y and Song, C and Zhang, Y and Zhang, X and Wang, Y and Hua, W and Li, D and Li, F and Yu, J and Xu, C and Han, X and Huang, S and Tai, S and Wang, J and Xu, X and Li, Y and Liu, S and Varshney, R K and Wang, J and Zhang, X (2014) Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biology, 15 (R39). pp. 1-13. ISSN 1465-6906
Varshney, R K and Balyan, H S and Langridge, P (2006) Wheat. In: Cereals and Millets. Genome Mapping and Molecular Breeding in Plants, 1 . Springer-Verlag , Berlin, Heidelberg, Germany, pp. 79-134. ISBN 978-3-540-34031-7
Varshney, R K and Thudi, M and Aggarwal, R K and Borner, A (2007) Genic molecular markers in plants: Development and applications. In: Genomics-Assisted Crop Improvement. Springer Netherlands, Dordrecht, The Netherlands, pp. 13-29. ISBN 978-1-4020-6294-0
Varshney, R K and Tuberosa, R (2007) Genomics-assisted crop improvement: An overview. In: Genomics-Assisted Crop Improvement. Springer Verlag, Dordrecht, The Netherlands, pp. 1-12. ISBN 978-1-4020-6294-0
Lin, Y and Min, J and Lai, R and Wu, Z and Chen, Y and Yu, L and Cheng, C and Jin, Y and Tian, Q and Liu, Q and Liu, W and Zhang, C and Lin, L and Zhang, D and Thu, M and Zhang, Z and Liu, S and Zhong, C and Fang, X and Wang, J and Yang, H and Varshney, R K and Yin, Y and Lai, Z (2017) Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. GigaScience, 6 (5). pp. 1-14. ISSN 2047-217X
Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440
Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540
Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X
Akpo, E and Bakari, H and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Comparative advantage of newly-released varieties of groundnut in Tanzania. [Policy Briefs]
Akpo, A and Mwalongo, S and Lukurugu, G A and Daudi, H and Muricho, G and Minja, A and Nzunda, J and Ojiewo, C and Varshney, R K (2021) Policy options for enhancing quality groundnut seed production and delivery systems in Tanzania. [Policy Briefs]
Jin, X and Zarco-Tejada, P and Schmidhalter, U and Reynolds, M P and Hawkesford, M J and Varshney, R K and Yang, T and Nie, C and Li, Z and Ming, B and Xiao, Y and Xie, Y and Li, S (2020) High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms. IEEE Geoscience and Remote Sensing Magazine. pp. 1-33. ISSN 2473-2397
Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY, 21 (3). pp. 491-498. ISSN 1814–9596 (In Press)
Varshney, R K (2013) Seeking Sustainable Protein Sources for Asia and Sub-Saharan Africa. Illumina Community Newsletter. pp. 1-2.
Jayashree, B and Ramu, P and Prasad, P and Bantte, K and Hash, C T and Chandra, S and Hoisington, D A and Varshney, R K (2006) A Database of Simple Sequence Repeats from Cereal and Legume Expressed Sequence Tags Mined in silico: Survey and Evaluation. In Silico Biology, 6 (6). pp. 607-620. ISSN 1434-3207
Muniswamy, S and Kumar, P and Saxena, R K and Geeta, - and Varshney, R K (2022) Stability of advanced medium duration genotypes across seasons for yield in pigeonpea [Cajanus cajan (L.) millsp.]. Indian Journal of Agricultural Research, 56 (2). pp. 129-134. ISSN 0976-058X
Kumar, N and Bharadwaj, C and Soni, A and Sachdeva, S and Yadav, M C and Pal, M and Soren, K R and Meena, M C and Roorkiwal, M and Varshney, R K and Rana, M (2020) Physio-morphological and molecular analysis for salt tolerance in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences, 90 (4). pp. 132-136.
Sachdeva, S and Bharadwaj, C and Singh, S and Roorkiwal, M and Sharma, V and Singh, A and Varshney, R K (2019) Yield plasticity and molecular diversity analysis in chickpea (Cicer arietinum). Indian Journal of Agricultural Sciences (TSI), 89 (5). pp. 834-841. ISSN 0019-5022
Saxena, R K and Thudi, M and Varshney, R K (2016) Genomics, trait mapping and molecular breeding in pigeonpea and chickpea. Indian Journal of Genetics and Plant Breeding, 76 (4). pp. 504-511. ISSN 0019-5200
Liu, H and Pandey, M K and Xu, Z and Rao, D and Huang, Z and Chen, M and Feng, D and Varshney, R K and Hong, Y (2019) Analysis and Evaluation of Quality Traits of Peanut Varieties with Near Infra-red Spectroscopy Technology. International Journal of Agriculture and Biology. pp. 1-8. ISSN 1814–9596 (In Press)
Gautami, B and Ravi, K and Narasu, M L and Hoisington, D A and Varshney, R K (2009) Novel set of groundnut SSR markers for germplasm analysis and interspecific transferability. International Journal of Integrative Biology, 7 (2). pp. 100-106.
Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067
Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596
Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067
Soren, K R and Madugula, P and Kumar, N and Barmukh, R and Sengar, M S and Bharadwaj, C and Sharma, P C and Singh, S and Bhandari, A and Singh, J and Sanwal, S K and Pal, M and Sneha Priya, P R and Mann, A and Sagurthi, S R and Shanmugavadivel, P S and Siddique, K H M and Singh, N P and Roorkiwal, M and Varshney, R K (2020) Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea. International Journal of Molecular Sciences (TSI), 21 (14). pp. 1-17. ISSN 1422-0067
Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067
Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596
Gumma, M K and Kumara Charyulu, D and Mohammed, I and Varshney, R K and Gaur, P M and Whitbread, A M (2016) Satellite imagery and household survey for tracking chickpea adoption in Andhra Pradesh, India. International Journal of Remote Sensing, 37 (08). pp. 1955-1972. ISSN 1366-5901
Krishnamurthy, L and Turner, N C and Gaur, P M and Upadhyaya, H D and Varshney, R K and Siddique, K H M and Vadez, V (2011) Consistent Variation across Soil Types in Salinity Resistance of a Diverse Range of Chickpea (Cicer arietinum L.) Genotypes. Journal Of Agronomy And Crop Science, 197 (3). pp. 214-227.
Gulati, P and Varshney, R K and Virdi, J S (2009) Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A. Journal Of Applied Microbiology, 107 (3). pp. 875-884.
Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224
Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224
Kimbi, T G and Akpo, E and Kongola, E and Ojiewo, C O and Vernooy, R and Muricho, G and Ringo, J and Lukurugu, G A and Varshney, R K and Tabo, R (2020) A probit Analysis of Determinants of Adoption of Improved Sorghum Technologies Among Farmers in Tanzania. Journal of Agricultural Science (TSI), 13 (1). pp. 73-87. ISSN 1916-9752
Kim, D H and Kaashyap, M and Rathore, A and Das, R A and Parupalli, S and Upadhyaya, H D and Gopalakrishnan, S and Gaur, P M and Singh, S and Kaur, J and Yasin, M and Varshney, R K (2014) Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences, 39 (3). pp. 1-5. ISSN 0250-5991
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Thakur, V and Varshney, R K (2010) Challenges and Strategies for Next Generation Sequencing (NGS) Data Analysis. Journal of Computer Science & Systems Biology, 3. pp. 40-42.
Akpo, E and Muricho, G and Lukurugu, G A and Opie, H and Ojiewo, C O and Varshney, R K (2020) Legume seed production for sustainable seed supply and crop productivity: case of groundnut in Tanzania and Uganda. Journal of Crop Improvement (TSI). pp. 1-22. ISSN 1542-7528
Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437
Pazhamala, L T and Purohit, S and Saxena, R K and Garg, V and Krishnamurthy, L and Verdier, J and Varshney, R K (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68 (8). pp. 2037-2054. ISSN 0022-0957
Tardieu, F and Varshney, R K and Tuberosa, R (2017) Improving crop performance under drought – cross-fertilization of disciplines. Journal of Experimental Botany, 68 (7). pp. 1393-1398. ISSN 0022-0957
Guo, P and Baum, M and Grando, S and Ceccarelli, S and Bai, G and Li, R and Korff, M V and Varshney, R K and Graner, A and Valkoun, J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. Journal of Experimental Botany, 60 (12). pp. 3531-3544.
Varshney, R K and Tuberosa, R and Tardieu, F (2018) Progress in understanding drought tolerance: from alleles to cropping systems. Journal of Experimental Botany (TSI), 69 (13). pp. 3175-3179. ISSN 0022-0957
Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957
Ye, H and Roorkiwal, M and Valliyodan, B and Zhou, L and Chen, P and Varshney, R K and Nguyen, H T (2018) Genetic diversity of root system architecture in response to drought stress in grain legumes. Journal of Experimental Botany (TSI), 69 (13). pp. 3267-3277. ISSN 0022-0957
Parupalli, S and Saxena, R K and Sameer Kumar, C V and Sharma, M and Singh, V K and Vechalapu, S and Kavi Kishor, P B and Saxena, K B and Varshney, R K (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244. ISSN 0970-6380
Saxena, K B and Sameer Kumar, C V and Hingane, A J and Nagesh Kumar, M V and Vijaykumar, R and Saxena, R K and Patil, S and Varshney, R K (2016) Hybrid ICPH 2740 assures quantum jump in pigeonpea productivity in peninsular India. Journal of Food Legumes, 29 (2). pp. 142-144. ISSN 0970-6380
Bhardwaj, R and Sandhu, J S and Varshney, R K and Gaur, P M and Kaur, L and Vikal, Y (2011) Synteny relationships among the linkage groups of chickpea (Cicer arietinum L.). Journal of Food Legumes, 24 (2). pp. 91-95.
Sharma, H C and Varshney, R K and Gaur, P M and Gowda, C L L (2008) Potential for using morphological, biochemical, and molecular markers for resistance to insect pests in grain legumes. Journal of Food Legumes, 21 (4). pp. 211-217. ISSN 0970-6380
Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X
Jacob, S and Sajjalaguddam, R R and Kumar, K V K and Varshney, R K and Sudini, H (2016) Assessing the prospects of Streptomyces sp. RP1A-12 in managing groundnut stem rot disease caused by Sclerotium rolfsii Sacc. Journal of General Plant Pathology. pp. 1-9. ISSN 1610-739X
Jadhav, A A and Rayate, S J and Mhase, L B and Thudi, M and Chitikineni, A and Harer, P N and Jadhav, A S and Varshney, R K and Kulwal, P L (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics. ISSN 0973-7731
Yang, S Y and Saxena, R K and Kulwal, P and Ash, G J and Dubey, A and Harper, J D I and Upadhyaya, H D and Gothalwal, R and Kilian, A and Varshney, R K (2011) The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers. Journal of Genetics, 90 (1). pp. 103-109.
Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072
Liu, Z and Feng, S and Pandey, M K and Chen, X and Culbreath, A K and Varshney, R K and Guo, B (2013) Identification of expressed resistance gene analogs from peanut (Arachis hypogaea L.) expressed sequence tags. Journal of Integrative Plant Biology, 55 (5). pp. 453-461. ISSN 1744-7909 (In Press)
Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.
Varshney, R K and Dubey, A (2009) Novel genomic tools and modern genetic and breeding approaches for crop improvement. Journal of Plant Biochemistry and Biotechnology, 18 (2). pp. 127-138.
Bohra, A and Mallikarjuna, N and Saxena, K B and Upadhyaya, H D and Vales, I and Varshney, R K (2010) Harnessing the Potential of Crop Wild Relatives through Genomics Tools for Pigeonpea Improvement. Journal of Plant Biology, 37 (1). pp. 83-98.
Géofroy, K and Gustave, D and Laura, E Y L and Relique, I A and Saxena, R K and Varshney, R K and Clément, A and Alexandre, D (2020) Agro-morphological characterization of pigeonpea (Cajanus cajan L. Millspaugh) landraces grown in Benin: Implications for breeding and conservation. Journal of Plant Breeding and Crop Science, 12 (1). pp. 34-49. ISSN 2006-9758
Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617
Ghatak, A and Chaturvedi, P and Nagler, M and Roustan, V and Lyon, D and Bachmann, G and Postl, W and Schröfl, A and Desai, N and Varshney, R K and Weckwerth, W (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). Journal of Proteomics, 143. pp. 122-135. ISSN 1876-7737
Varshney, R K (2007) Chickpea Genomics Consortium on Drought Tolerance. Journal of SAT Agricultural Research, 3 (1). p. 1.
Varshney, R K and Nayak, S N and Jayashree, B and Eshwar, K and Upadhyaya, H D and Hoisington, D A (2007) Development of cost-effective SNP assays for chickpea genome analysis and breeding. Journal of SAT Agricultural Research, 3 (1). pp. 1-3. ISSN 0973-3094
Varshney, R K and Horres, R and Molina, C and Nayak, S N and Jungmann, R and Swamy, P and Winter, P and Jayashree, B and Kahl, G and Hoisington, D A (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of SAT Agricultural Research, 5 (1). pp. 1-3. ISSN 0973-3094
Varshney, R K (2007) Pigeonpea genomics initiative established under Indo-US agricultural knowledge initiative. Journal of SAT Agricultural Research, 3 (1). p. 1.
Saxena, K B and Sameer Kumar, C V and Saxena, R K and Vijay Kumar, R and Singh, I P and Hingane, A J and Mula, M G and Patil, S B and Varshney, R K (2016) Hybrid pigeonpea: Accomplishments and challenges for the next decade. Legume Perspectives (11). pp. 30-32. ISSN 2340-1559
Sameer Kumar, C V and Singh, I P and Vijay Kumar, R and Patil, S B and Tathineni, R and Mula, M G and Saxena, R K and Hingane, A J and Rathore, A and Ravinder Reddy, CH and Nagesh Kumar, M and Sudhakar, C and Varshney, R K (2016) Pigeonpea - A unique jewel in rainfed cropping systems. Legume Perspectives (11). 08-10. ISSN 2340-1559
Mula, M G and Sameer Kumar, C V and Ravinder Reddy, CH and Monyo, E and Saxena, R K and Varshney, R K (2016) Pigeonpea seed systems in Asia. Legume Perspectives (11). pp. 44-45. ISSN 2340-1559
Saxena, R K and Saxena, K B and Sameer Kumar, C V and Singh, N P and Varshney, R K (2016) Strategies for pigeonpea improvement. Legume Perspectives (11). pp. 50-51. ISSN 2340-1559
Roorkiwal, M and Thudi, M and Gaur, P M and Upadhyaya, H D and Singh, N P and Varshney, R K (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives (7). pp. 7-9. ISSN 2340-1559
Gaur, P M and Samineni, S and Krishnamurthy, L and Kumar, Shiv and Ghanem, M E and Beebe, S and Rao, I and Chaturvedi, S K and Basu, P S and Nayyar, H and Jayalakshmi, V and Babbar, A and Varshney, R K (2015) High temperature tolerance in grain legumes. Legume Perspectives (7). pp. 23-24. ISSN 2340-1559
Millan, T and Madrid, E and Varshney, R K (2014) Genomic resources in chickpea. Legume Perspectives (3). pp. 12-14. ISSN 2340-1559
Gaur, P M and Samineni, S and Varshney, R K (2014) Drought and heat tolerance in chickpea. Legume Perspetives (3). pp. 15-17. ISSN 2340-1559
Divya, C and Gaurav, A and Hui, W and Pandey, M K and Culbreath, A K and Varshney, R K and Guo, B (2019) Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research - An International Journal, 42 (2). pp. 137-144. ISSN 0250-5371
Gopalakrishnan, S and Srinivas, V and Prakash, B and Arumugam, S and Vijayabharathi, R and Rupela, O and Kudapa, H and Krishnamohan, K and Varshney, R K (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169. pp. 40-48. ISSN 0944-5013
Koebner, R M D and Varshney, R K (2006) Development and Application of Genomic Models for Large-Crop Plant Genomes. In: Model Plants and Crop Improvement. CRC Press(Taylor & Francis), UK, pp. 1-10. ISBN 978-0-8493-3063-6
Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978
Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788
Gautami, B and Pandey, M K and Vadez, V and Nigam, S N and Ratnakumar, P and Krishnamurthy, L and Radhakrishnan, T and Gowda, M V C and Narasu, M L and Hoisington, D A and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 757-772. ISSN 1572-9788
Sujay, V and Gowda, M V C and Pandey, M K and Bhat, R S and Khedikar, Y P and Nadaf, H L and Gautami, B and Sarvamangala, C and Lingaraju, S and Radhakrishan, T and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788. ISSN 1572-9788
Neumann, K and Kobiljski, B and Dencic, S and Varshney, R K and Borner, A (2011) Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.). Molecular Breeding, 27. pp. 37-58. ISSN 1572-9788
Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26 (2). pp. 371-380. ISSN 1380-3743
Saxena, R K and Saxena, K B and Varshney, R K (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Molecular Breeding, 26. pp. 371-380. ISSN 1572-9788
Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.
Varshney, R K and Penmetsa, R V and Dutta, S and Kulwal, P L and Saxena, R K and Datta, S and Sharma, T R and Rosen, B and Carrasquilla-Garcia, N and Farmer, A D and Dubey, A and Saxena, K B and Gao, J and Fakrudin, B and Singh, M N and Singh, B P and Wanjari, K B and Yuan, M and Srivastava, R K and Kilian, A and Upadhyaya, H D and Mallikarjuna, N and Town, C D and Bruening, G E and He, G and May, G D and McCombie, R and Jackson, S A and Singh, N K and Cook, D R (2010) Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding, 26 (3). pp. 393-408. ISSN 1380-3743
Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.
Varshney, R K and Thiel, T and Sretenovic-Rajicic, T and Baum, M and Valkoun, J and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Molecular Breeding, 22 (1). pp. 1-13. ISSN 1380-3743
Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743
Khedikar, Y and Pandey, M K and Sujay, V and Singh, S and Nayak, S N and Klein-Gebbinck, H W and Sarvamangala, C and Mukri, G and Garg, V and Upadhyaya, H D and Nadaf, H L and Gowda, M V C and Varshney, R K and Bhat, R S (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding (TSI), 38(1) (7). pp. 1-12. ISSN 1380-3743
Pratap, A and Chaturvedi, S K and Tomar, R and Rajan, N and Malviya, N and Thudi, M and Saabale, P R and Prajapati, U and Varshney, R K and Singh, N P (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics. pp. 1-9. ISSN 1617-4615
Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623
Obala, J and Saxena, R K and Singh, V K and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics (TSI), 294 (1). pp. 57-68. ISSN 1617-4615
Khera, P and Pandey, M K and Mallikarjuna, N and Sriswathi, M and Roorkiwal, M and Janila, P and Sharma, S and Shilpa, K and Sudini, H and Guo, B and Varshney, R K (2018) Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics (TSI). pp. 1-14. ISSN 1617-4615
Rasheed, A and Hao, Y and Xia, X and Khan, A and Xu, Y and Varshney, R K and He, Z (2017) Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives. Molecular Plant, 10 (8). pp. 1047-1064. ISSN 16742052
Clevenger, J and Chu, Y and Chavarro, C and Agarwal, G and Bertioli, D J and Leal-Bertioli, S C M and Pandey, M K and Vaughn, J and Abernathy, B and Barkley, N A and Hovav, R and Burow, M and Nayak, S N and Chitikineni, A and Isleib, T G and Holbrook, C C and Jackson, S A and Varshney, R K and Ozias-Akins, P (2017) Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant, 10 (2). pp. 309-322. ISSN 1674-2052
Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867
McCouch, S and Navabi, K and Abberton, M and Anglin, N L and Barbieri, R L and Baum, M and Bett, K and Booker, H and Brown, G L and Bryan, G J and Cattivelli, L and Charest, D and Eversole, K and Freitas, M and Ghamkhar, K and Grattapaglia, D and Henry, R and Valadares Inglis, M C and Islam, T and Kehel, Z and Kersey, P J and Kresovich, S and Marden, E and Mayes, S and Ndjiondjop, M N and Nguyen, H T and Paiva, S and Papa, R and Phillips, P W B and Rasheed, A and Richards, C and Rouard, M and Amstalden Sampaio, M J and Scholz, U and Shaw, P D and Sherman, B and Staton, S E and Stein, N and Svensson, J and Tester, M and Montenegro Valls, J F and Varshney, R K and Visscher, S and von Wettberg, E and Waugh, R and Wenzl, P W B and Rieseberg, L H (2020) Mobilizing Crop Biodiversity. Molecular Plant (TSI). pp. 1-12. ISSN 1674-2052
Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052
Marcel, T C and Aghnoum, R and Durand, J and Varshney, R K and Niks, R E (2007) Dissection of the Barley 2L1.0 Region Carrying the ‘Laevigatum’ Quantitative Resistance Gene to Leaf Rust Using Near-Isogenic Lines (NIL) and subNIL. Molecular Plant-Microbe Interactions, 20 (12). pp. 1604-1615. ISSN 0894-0282
Varshney, R K and Pande, S and Kannan, S and Thudi, M and Sharma, M and Gaur, P M and Hoisington, D A (2009) Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). Mycological Progress. pp. 1-11.
Sharma, R and Thakur, R P and Senthilvel, S and Nayak, S N and Veera Reddy, S and Rao, V P and Varshney, R K (2011) Identification and Characterization of Toxigenic Fusaria Associated with Sorghum Grain Mold Complex in India. Mycopathologia, 171. pp. 223-230.
Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687
McCouch, S and Baute, G J and Bradeen, J and Bramel, P and Bretting, P K and Buckler, E and Burke, J M and Charest, D and Cloutier, S and Cole, G and Dempewolf, H and Dingkuhn, M and Feuillet, C and Gepts, P and Grattapaglia, D and Guarino, L and Jackson, S and Knapp, S and Langridge, P and Lawton-Rauh, A and Lijua, Q and Lusty, C and Michael, T and Myles, S and Naito, K and Nelson, R L and Pontarollo, R and Richards, C M and Rieseberg, L and Ross-Ibarra, J and Rounsley, S and Hamilton, R S and Schurr, U and Stein, N and Tomooka, N and van der Knaap, E and van Tassel, D and Toll, J and Valls, J and Varshney, R K and Ward, J and Waugh, R and Wenzl, P and Zamir, D (2013) Agriculture: Feeding the future. Nature, 24 (499). pp. 23-24. ISSN 1476-4687
Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156
Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696
Varshney, R K and Ribaut, J M and Buckler, E S and et al, . (2012) Can genomics boost productivity of orphan crops? Nature Biotechnology, 30. pp. 1172-1176. ISSN 1087-0156
Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696
Varshney, R K and Godwin, I D and Mohapatra, T and Jones, J D G and McCouch, S R (2019) A SWEET solution to rice blight. Nature Biotechnology (TSI), 37 (11). pp. 1280-1282. ISSN 1087-0156
Kang, Y J and Kim, S K and Kim, M Y and Lestari, P and Kim, K H and Ha, B K and Jun, T H and Hwang, W J and Lee, T and Lee, J and Shim, S and Yoon, M Y and Jang, Y E and Han, K S and Taeprayoon, P and Yoon, N and Somta, P and Tanya, P and Kim, K S and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Bombarely, A and Doyle, J J and Jackson, S A and Schafleitner, R and Srinives, P and Varshney, R K and Lee, S H (2014) Genome sequence of mungbean and insights into evolution within Vigna species. Nature Communications, 5 (5443). 01-09. ISSN 2041-1723
Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X
Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718
Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036
Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718
Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036
Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036
Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036
Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278
Penmetsa, R V and Carrasquilla-Garcia, N and Bergmann, E M and Vance, L and Castro, B and Kassa, M T and Sarma, B K and Datta, S and Farmer, A D and Baek, J M and Coyne, C J and Varshney, R K and Wettberg, E J B V and Cook, D R (2016) Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 01-12. ISSN 0028-646X
Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Organic Agriculture, 5 (2). pp. 123-133. ISSN 1879-4238
Pazhamala, L T and Agarwal, G and Bajaj, P and Kumar, V and Kulshreshtha, A and Saxena, R K and Varshney, R K (2016) Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLOS ONE, 11 (10). 01-17. ISSN 1932-6203
Khera, P and Pandey, M K and Wang, H and Feng, S and Qiao, L and Culbreath, A K and Kale, S M and Wang, J and Holbrook, C C and Zhuang, W and Varshney, R K and Guo, B (2016) Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE, 11 (7). 01-17. ISSN 1932-6203
Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203
Baisakh, N and Sachdeva, S and Bharadwaj, C and Singh, R K and Jain, P K and Patil, B S and Roorkiwal, M and Varshney, R K (2020) Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 15 (7). pp. 1-25. ISSN 1932-6203
Prasad, M and Bera, S K and Kamdar, J H and Kasundra, S V and Patel, S V and Jasani, M D and Maurya, A K and Dash, P and Chandrashekar, A B and Rani, K and Manivannan, N and Janila, P and Pandey, M K and Vasanthi, R P and Dobariya, K L and Radhakrishnan, T and Varshney, R K (2019) Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits. PLOS ONE (TSI), 14 (12). pp. 1-21. ISSN 1932-6203
Katta, M A V S K and Khan, A W and Doddamani, D and Thudi, M and Varshney, R K (2015) NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data. PLOS One, 10 (10). pp. 1-9. ISSN 1932-6203
Sinha, P and Singh, V K and Suryanarayana, V and Krishnamurthy, L and Saxena, R K and Varshney, R K (2015) Evaluation and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) Under Drought Stress Conditions. PLOS One, 10 (4). pp. 1-15. ISSN 1932-6203
Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173
Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203
Wang, M L and Khera, P and Pandey, M K and Wang, H and Qiao, L and Feng, S and Tonnis, B and Barkley, N A and Pinnow, D and Holbrook, C C and Culbreath, A K and Varshney, R K and Guo, B (2015) Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLoS ONE. 01-21. ISSN 1932-6203
Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203
Roorkiwal, M and von Wettberg, E J and Upadhyaya, H D and Warschefsky, E and Rathore, A and Varshney, R K (2014) Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers. PLoS ONE, 9 (7). pp. 1-10. ISSN 1932-6203
Saxena, R K and von Wettberg, E and Upadhyaya, H D and Sanchez, V and Songok, S and Saxena, K B and Kimurto, P.K. and Varshney, R K (2014) Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs. PLoS ONE, 9 (2). pp. 1-9. ISSN 1932-6203
Azam, S and Rathore, A and Shah, T and Mohan, T and Amindala, BP and Ruperao, P and Katta, M A V S K and Varshney, R K (2014) An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data. PLoS ONE, 9 (7). pp. 1-11. ISSN 1932-6203
Xiao, Y and Li, R and Ning, Z and Bai, G and Siddique, K H M and Yan, G and Baum, M and Varshney, R K and Guo, P (2013) Single Nucleotide Polymorphisms in HSP17.8 and Their Association with Agronomic Traits in Barley. PLoS ONE, 8 (2). pp. 1-10. ISSN 1932-6203
Kassa, M T and Penmetsa, R V and Carrasquilla-Garcia, N and et al, . (2012) Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives. PLoS ONE, 7 (6). pp. 1-13. ISSN 1932-6203
Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203
Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203
Jain, A and Roorkiwal, M and Kale, S and Garg, V and Yadala, R and Varshney, R K (2019) InDel markers: An extended marker resource for molecular breeding in chickpea. PLoS ONE (TSI), 14 (3). pp. 1-13. ISSN 1932-6203
Mahdavi Mashaki, K and Garg, V and Ghomi, A A N and Kudapa, H and Chitikineni, A and Zaynali Nezhad, K and Yamchi, A and Soltanloo, H and Varshney, R K and Thudi, M (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE (TSI), 13 (6). pp. 1-17. ISSN 1932-6203
Pandey, M K and Upadhyaya, H D and Rathore, A and Vadez, V and Sheshshayee, M S and Sriswathi, M and Govil, M and Kumar, A and Gowda, M V and Sharma, S and Hamidou, F and Kumar, V A and Khera, P and Bhat, R S and Khan, A W and Singh, S and Li, H and Monyo, E and Nadaf, H L and Mukri, G and Jackson, S A and Guo, B and Liang, X and Varshney, R K (2014) Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLoS One, 9 (8). pp. 1-14. ISSN 1932-6203
Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D (2011) Genomics and physiological approaches for root trait breeding to improve drought tolerance in chickpea (Cicer arietinum L.). In: Root Genomics. Springer Berlin, Heidelberg, pp. 233-250. ISBN 978-3-540-85545-3
Guo, B and Pandey, M K and He, G and Zhang , X and Liao , B and Culbreath , A and Varshney, R K and Nwosu, V and Wilson, R F and Stalker , H T (2013) Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science, 40 (2). pp. 95-106. ISSN 0095-3679
Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Broad-Spectrum Streptomyces sp. for Plant Growth Promotion Traits in Chickpea (Cicer arietinum L.). Philippine Agricultural Scientist, 98 (3). pp. 270-278. ISSN 0031-7454
Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684
Sharma, R and Singh, S and Nayak, S and Boyapati, P and Khan, A and Varshney, R K (2018) Comparative transcriptome profiling of compatible and incompatible Magnaporthe grisea-pearl millet interaction. Phytopathology (TSI), 108 (10). pp. 42-43. ISSN 0031-949X
Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X
Varshney, R K and Coyne, C J and Swamy, P and Hoisington, D A (2008) Molecular identification of genetically distinct accessions in the USDA chickpea core collection. Pisum Genetics, 39. pp. 32-33. ISSN 1320-2510
Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S and Zheng, Y and Ma, S and Tang, R and Varshney, R K and Zhuang, W (2016) Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnol Journal, 14 (2). pp. 682-698. ISSN 2349-6738
Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652
Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652
Kulwal, P L and Mir, R R and Varshney, R K (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal, 20. pp. 1021-1030. ISSN 1467-7652
Roorkiwal, M and Jain, A and Kale, S M and Doddamani, D and Chitikineni, A and Thudi, M and Varshney, R K (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal. pp. 1-12. ISSN 14677644
Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644
Singh, V K and Khan, A W and Saxena, R K and Sinha, P and Kale, S M and Parupalli, S and Kumar, V and Chitikineni, A and Vechalapu, S and Sameer Kumar, C V and Sharma, M and Ghanta, A and Yamini, K N and Muniswamy, S and Varshney, R K (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal. pp. 1-9. ISSN 1467-7644
Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644
Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652
Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644
Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652
Kumar, V and Khan, A W and Saxena, R K and Garg, V and Varshney, R K (2016) First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (08). pp. 1673-1681. ISSN 1467-7652
Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644
Ruperao, P and Chan, C-K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrana, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal. ISSN 1467-7652
Chen, X and Zhu, W and Azam, S and Li, H and Zhu, F and Li, H and Hong, Y and Liu, H and Zhang, E and Wu, H and Yu, S and Zhou, G and Li, S and Zhong, N and Wen, S and Li, X and Knapp, S J and Ozias-Akins, P and Varshney, R K and Liang, X (2013) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.
Hiremath, P J and Kumar, A and Penmetsa, R V and et al, . (2012) Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal, 10 (6). pp. 716-732. ISSN 1467-7652
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644
Song, X and Sun, P and Yuan, J and Gong, K and Li, N and Meng, F and Zhang, Z and Li, X and Hu, J and Wang, J and Yang, Q and Jiao, B and Nie, F and Liu, T and Chen, W and Feng, S and Pei, Q and Yu, T and Kang, X and Zhao, W and Cui, C and Yu, Y and Wu, T and Shan, L and Liu, M and Qin, Z and Lin, H and Varshney, R K and Li, X Q and Paterson, A H and Wang, X (2020) The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644
Bohra, A and Chand Jha, U and Godwin, I D and Varshney, R K (2020) Genomic interventions for sustainable agriculture. Plant Biotechnology Journal (TSI). pp. 1-18. ISSN 1467-7644
Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644
Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644
Weckwerth, W and Ghatak, A and Bellaire, A and Chaturvedi, P and Varshney, R K (2020) PANOMICS meets germplasm. Plant Biotechnology Journal (TSI), 18 (7). pp. 1507-1525. ISSN 1467-7644
Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644
Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644
Li, S and Zhu, Y and Varshney, R K and Zhan, J and Zheng, X and Shi, J and Wang, X and Liu, G and Wang, H (2020) A systematic dissection of the mechanisms underlying the natural variation of silique number in rapeseed ( Brassica napus L.) germplasm. Plant Biotechnology Journal (TSI), 18 (2). pp. 568-580. ISSN 1467-7644
Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644
Gangurde, S S and Wang, H and Yaduru, S and Pandey, M K and Fountain, J C and Chu, Y and Isleib, T and Holbrook, C C and Xavier, A and Culbreath, A K and Ozias‐Akins, P and Varshney, R K and Guo, B (2019) Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 1467-7644
Luo, H and Pandey, M K and Khan, A W and Wu, B and Guo, J and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (12). pp. 2356-2369. ISSN 1467-7644
Huang, L and Liu, X and Pandey, M K and Ren, X and Chen, H and Xue, X and Liu, N and Huai, D and Chen, Y and Zhou, X and Luo, H and Chen, W and Lei, Y and Liu, K and Xiao, Y and Varshney, R K and Liao, B and Jiang, H (2019) Genome‐wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut. Plant Biotechnology Journal (TSI), 18 (3). pp. 779-790. ISSN 1467-7644
Luo, H and Pandey, M K and Khan, A W and Guo, J and Wu, B and Cai, Y and Huang, L and Zhou, X and Chen, Y and Chen, W and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 17 (7). pp. 1248-1260. ISSN 1467-7644
Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644
Abbai, R and Singh, V K and Nachimuthu, V V and Sinha, P and Selvaraj, R and Vipparla, A K and Singh, A K and Singh, U M and Varshney, R K and Kumar, A (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal (TSI), 17 (8). pp. 1612-1622. ISSN 14677644
Luo, H and Pandey, M K and Khan, A W and Guo, J and Wu, B and Cai, Y and Huang, L and Zhou, X and Chen, Y and Chen, W and Liu, N and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2019) Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.). Plant Biotechnology Journal (TSI). pp. 1248-1260. ISSN 1467-7644
Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal (TSI), 17 (2). pp. 517-530. ISSN 14677644
Patil, Gunvant and Vuong, T D and Kale, S M and Valliyodan, B and Deshmukh, R and Zhu, C and Wu, X and Bai, Y and Yungbluth, D and Lu, F and Kumpatla, S and Shannon, J G and Varshney, R K and Nguyen, H T (2018) Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping. Plant Biotechnology Journal (TSI). pp. 1-15. ISSN 14677644
Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644
Kumar, R and Janila, P and Vishwakarma, M K and Khan, A W and Manohar, S S and Gangurde, S S and Variath, M T and Shasidhar, Y and Pandey, M K and Varshney, R K (2019) Whole‐genome resequencing‐based QTL ‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal(TSI). pp. 1-12. ISSN 1467-7644
Saxena, K B and Saxena, R K and Varshney, R K (2017) Use of immature seed germination and single seed descent for rapid genetic gains in pigeonpea. Plant Breeding. pp. 1-4. ISSN 01799541
Janila, P and Pandey, M K and Manohar, S S and Variath, M T and Nallathambi, P and Nadaf, H L and Sudini, H and Varshney, R K (2016) Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing. Plant Breeding, 135 (03). pp. 355-366. ISSN 1439-0523
Vishwakarma, M K and Pandey, M K and Shasidhar, Y and Manohar, S S and Nagesh, P and Janila, P and Varshney, R K (2016) Identification of two major quantitative trait locus for fresh seed dormancy using the diversity arrays technology and diversity arrays technology-seq based genetic map in Spanish-type peanuts. Plant Breeding, 135. pp. 367-375. ISSN 0179-9541
Kaoneka, S R and Saxena, R K and Silim, S N and Odeny, D A and Ganga Rao, N V P R and Shimelis, H A and Siambi, M and Varshney, R K (2016) Pigeonpea breeding in eastern and southern Africa: challenges and opportunities. Plant Breeding, 135 (2). pp. 148-154. ISSN 1439-0523
Yeri, S B and Shirasawa, K and Pandey, M K and Gowda, M V C and Sujay, V and Shriswathi, M and Nadaf, H L and Motagi, B N and Lingaraju, S and Lingaraju, A R S and Varshney, R K and Krishnaraj, P U and Bhat, R S (2014) Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding, 133 (1). pp. 80-85. ISSN 0179-9541
Gupta, P K and Balyan, H S and Varshney, R K and Gill, K S (2013) Development and use of molecular markers for crop improvement. Plant Breeding, 132. pp. 431-432. ISSN 1439-0523
Saxena, K B and Kumar, R V and Tikle, A N and Saxena, M K and Gautam, V S and Rao, S K and Khare, D K and Chauhan, Y S and Saxena, R K and Reddy, B V S and Sharma, D and Reddy, L J and Green, J M and Faris, D G and Mula, M G and Sultana, R and Srivastava, R K and Gowda, C L L and Sawargaonkar, S L and Varshney, R K (2013) ICPH 2671 – the world’s first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485. ISSN 1439-0523 (In Press)
Mir, R R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Kilian, A and Cook, D R and Varshney, R K (2013) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding, 132 (5). pp. 472-478. ISSN 1439-0523
Pandey, M K and Gautami, B and Jayakumar, T and Sriswathi, M and Upadhyaya, H D and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Cook, D R and Varshney, R K (2012) Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding, 131 (1). pp. 139-147. ISSN 1439-0523
Mallikarjuna, N and Senapathy, S and Jadhav, D R and Saxena, K B and Sharma, H C and Upadhyaya, H D and Rathore, A and Varshney, R K (2011) Progress in the utilization of Cajanus platycarpus Benth.) Maesen in pigeonpea improvement. Plant Breeding, 130 (5). pp. 507-514.
Saxena, K B and Sultana, R and Mallikarjuna, N and Saxena, R K and Kumar, R V and Sawargaonkar, S L and Varshney, R K (2010) Male-sterility systems in pigeonpea and their role in enhancing yield. Plant Breeding, 129 (2). pp. 125-134.
Saxena, R K and Prathima, C and Saxena, K B and Hoisington, D A and Singh, N K and Varshney, R K (2010) Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.). Plant Breeding, 129 (2). pp. 142-148.
Saxena, R K and Saxena, K B and Kumar, R V and Hoisington, D A and Varshney, R K (2010) Simple sequence repeat-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance to Fusarium wilt and sterility mosaic disease. Plant Breeding, 129. pp. 135-141. ISSN 0179-9541
Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2009) High level of natural variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding, 128 (5). pp. 486-494.
Pattanashetti, S K and Pandey, M K and Naidu, G K and Vishwakarma, M K and Singh, O K and Shasidhar, Y and Boodi, I H and Biradar, B D and Das, R R and Rathore, A and Varshney, R K and Morris, B (2020) Identification of quantitative trait loci associated with iron deficiency chlorosis resistance in groundnut ( Arachis hypogaea ). Plant Breeding (TSI), 139 (4). pp. 790-803. ISSN 0179-9541
Jadhav, Y and Manohar, S S and Sunkad, G and Kannalli, V P and Pandey, M K and Variath, M T and Yaduru, S and Kona, P and Varshney, R K and Janila, P (2019) Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541
Desmae, H and Janila, P and Okori, P and Pandey, M K and Motagi, B N and Monyo, E and Mponda, O and Okello, D and Sako, D and Echeckwu, C and Oteng-Frimpong, R and Miningou, A and Ojiewo, C O and Varshney, R K and Morris, B (2019) Genetics, genomics and breeding of groundnut (Arachis hypogaea L.). Plant Breeding (TSI). pp. 1-20. ISSN 01799541
Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541
Sameer Kumar, C V and Ganga Rao, N V P R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Siambi, M and Silim, S N and Reddy, K N and Hingane, A J and Sharma, M and Sharma, S and Lyimo, S D and Ubwe, R and Makenge, M and Gad, K and Kimurto, P K and Amane, M and Kanenga, K and Obong, Y and Monyo, E and Ojiewo, C O and Mallela Venkata, N K and Polineni Rao, J and Lakkireddy, P and Chourat, S and Singh, I and Sajja, S and Beliappa, S H and Varshney, R K (2019) Pigeonpea improvement: An amalgam of breeding and genomic research. Plant Breeding (TSI). pp. 1-10. ISSN 01799541
Varshney, R K and Ojiewo, C O and Monyo, E (2019) A decade of Tropical Legumes projects: Development and adoption of improved varieties, creation of market-demand to benefit smallholder farmers and empowerment of national programmes in sub-Saharan Africa and South Asia. Plant Breeding (TSI), 138 (4). pp. 379-388. ISSN 01799541
Rubyogo, J C and Akpo, E and Omoigui, L and Gaur, P M and Chaturvedi, S K and Fikre, A and Desmae, H and Ajeigbe, H A and Monyo, E and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Kouyate, Z and Diallo, S and Oteng‐Frimpong, R and Yirzagla, J and Iorlamen, T and Garba, U and Mohammed, H and Ojiewo, C O and Kamara, A and Varshney, R K and Nigam, S N and Janila, P and Nadaf, H L and Kalemera, S and Downes, A (2019) Market‐led options to scale up legume seeds in developing countries: Experiences from the Tropical Legumes Project. Plant Breeding (TSI). pp. 1-13. ISSN 0179-9541
Saxena, K B and Choudhary, A K and Srivastava, R K and Bohra, A and Saxena, R K and Varshney, R K (2019) Origin of early maturing pigeonpea germplasm and its impact on adaptation and cropping systems. Plant Breeding (TSI), 138 (3). pp. 243-251. ISSN 0179-9541
Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.
Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621
Lee, S H and Tuberosa, R and Jackson, S A and Varshney, R K (2014) Genomics of plant genetic resources: a gateway to a new era of global food security. Plant Genetic Resources, 12 (S1). S2-S5. ISSN 1479-2621
Vetriventhan, M and Upadhyaya, H D and Anandakumar, C R and Senthilvel, S and Parzies, H K and Bharathi, A and Varshney, R K and Gowda, C L L (2012) Assessing genetic diversity, allelic richness and genetic relationship among races in ICRISAT foxtail millet core collection. Plant Genetic Resources, 10 (3). pp. 214-223. ISSN 1479-2621
Tuberosa, R and Graner, A and Varshney, R K (2011) Genomics of plant genetic resources: an introduction. Plant Genetic Resources, 9 (2). pp. 151-154. ISSN 1479-2621
Upadhyaya, H D and Reddy, K N and Sharma, S and Varshney, R K and Bhattacharjee, R and Singh, Sube and Gowda, C L L (2011) Pigeonpea composite collection and identification of germplasm for use in crop improvement programmes. Plant Genetic Resources, 9 (1). pp. 97-108. ISSN 1479-2621
Varshney, R K and Salem, K F M and Baum, M and Roder, M S and Graner, A and Borner, A (2008) SSR and SNP diversity in a barley germplasm collection. Plant Genetic Resources, 6 (2). pp. 167-174. ISSN 1479-2621
Anggraeni, T D A and Satyawan, D and Kang, Y J and Ha, J and Kim, M Y and Chitikineni, A and Varshney, R K and Lee, S H (2018) Genetic diversity of Jatropha curcas collections from different islands in Indonesia. Plant Genetic Resources (TSI). pp. 1-9. ISSN 1479-2621
Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.
Krishnamurthy, L and Gaur, P M and Basu, P S and Chaturvedi, S K and Tripathi, S and Vadez, V and Rathore, A and Varshney, R K and Gowda, C L L (2011) Large genetic variation for heat tolerance in the reference collection of chickpea (Cicer arietinum L.) germplasm. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 59-69.
Upadhyaya, H D and Dwivedi, S L and Sharma, S and Lalitha, N and Singh, S and Varshney, R K and Gowda, C L L (2014) Enhancement of the use and impact of germplasm in crop improvement. Plant Genetic Resources: Characterization and Utilization, 12 (S1). S155-S159. ISSN 1479-2621
Punnuri, S M and Wallace, J G and Knoll, J E and Hyma, K E and Mitchell, S E and Buckler, E S and Varshney, R K and Singh, B P (2016) Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. Plant Genome, 09 (02). 01-13. ISSN 1940-3372
Arbelaez, J D and Tandayu, E and Reveche, M Y and Jarana, A and van Rogen, P and Sandager, L and Stolt, P and Ng, E and Varshney, R K and Kretzschmar, T and Cobb, J (2019) Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice. Plant Methods (TSI), 15(1) (78). pp. 1-11. ISSN 1746-4811
Zhu, W and Chen, X and Li, H and Zhu, F and Hong, Y and Varshney, R K and Liang, X (2014) Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut. Plant Molecular Biology, 85 (4-5). pp. 395-409. ISSN 1573-5028
Wang, X and Xu, P and Yin, L and Ren, Y and Li, S and Shi, Y and Alcock, T D and Xiong, Q and Qian, W and Chi, X and Pandey, M K and Varshney, R K and Yuan, M (2018) Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.). Plant Molecular Biology Reporter (TSI). pp. 1-12. ISSN 0735-9640
Reddy, P S and Jogeswar, G and Rasineni, G K and Maheswari, M and Reddy, A R and Varshney, R K and Kavi Kishor, P B (2015) Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench]. Plant Physiology and Biochemistry, 94. pp. 104-113. ISSN 0981-9428
Varshney, R K (2016) Exciting journey of 10 years from genomes to fields and markets: some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut. Plant Science, 242. pp. 98-107. ISSN 0168-9452
Janila, P and Pandey, M K and Shasidhar, Y and Variath, M T and Sriswathi, M and Khera, P and Manohar, S S and Nagesh, P and Vishwakarma, M K and Mishra, G P and Radhakrishnan, T and Manivannan, N and Dobariya, K L and Vasanthi, R P and Varshney, R K (2016) Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. pp. 203-213. ISSN 0168-9452
Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452
Tatikonda, L and Wani, S P and Kannan, S and Beerelli, N and Sreedevi, T K and Hoisington, D A and Devi, P and Varshney, R K (2009) AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant. Plant Science, 176 (4). pp. 505-513.
Nayak, S N and Balaji, J and Upadhyaya, H D and Hash, C T and Kishor, P B K and Chattopadhyay, D and Rodriquez, L M and Blair, M W and Baum, M and McNally, K and This, D and Hoisington, D A and Varshney, R K (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science, 177 (5). pp. 460-467.
Mace, E S and Varshney, R K and Mahalakshmi, V and Seetha, K and Gafoor, A and Leeladevi, Y and Crouch, J H (2008) In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science, 174 (1). pp. 51-60. ISSN 0168-9452
Varshney, R K and Chabane, K and Hendre, P S and Aggarwal, R K and Graner, A (2007) Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173 (6). pp. 638-649. ISSN 0168-9452
Amrutha, R N and Sekhar, P N and Varshney, R K and Kishor, P B K (2007) Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.). Plant Science, 172 (4). pp. 708-721. ISSN 0168-9452
Gowda, M V C and Bhat, R S and Sujay, V and Kusuma, P and Kumari, Varsha and Varshney, R K and Bhat, S (2011) Characterization of AhMITE1 transposition and its association with the mutational and evolutionary origin of botanical types in peanut (Arachis spp.). Plant Systematics and Evolution, 291 (3-4). pp. 153-158.
Palit, P and Ghosh, R and Tolani, P and Tarafdar, A and Chitikineni, A and Bajaj, P and Sharma, M and Kudapa, H and Varshney, R K (2020) Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations. Plant and Cell Physiology (TSI), 61 (8). pp. 1449-1463. ISSN 1471-9053
Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791
Foyer, C H and Siddique, K H M and Tai, A P K and Anders, S and Fodor, N and Wong, F L and Ludidi, N and Chapman, M A and Ferguson, B J and Considine, M J and Zabel, F and Vara Prasad, P V and Varshney, R K and Nguyen, H T and Lam, H M (2018) Modelling predicts that soybean is poised to dominate crop production across Africa. Plant, Cell & Environment (TSI). pp. 1-13. ISSN 01407791
Kudapa, H and Garg, V and Chitikineni, A and Varshney, R K (2018) The RNA-Seq based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development. Plant, Cell & Environment (TSI). pp. 1-17. ISSN 0140-7791
Witzel, K and Weidner, A and Surabhi, G K and Varshney, R K and Kunze, G and Buck-Sorlin, G H and Borner, A and Mock, H P (2010) Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination. Plant, Cell and Environment, 33 (2). pp. 211-222.
Flowers, T J and Gaur, P M and Gowda, C L L and Krishnamurthy, L and Samineni, S and Siddique, K H M and Turner, N C and Vadez, V and Varshney, R K and Colmer, T D (2010) Salt sensitivity in chickpea. Plant, Cell and Environment , 33 (4). pp. 490-509. ISSN 0140-7791
Sharma, V and Bhattacharyya, S and Kumar, R and Kumar, A and Ibañez, F and Wang, J and Guo, B and Sudini, H K and Gopalakrishnan, S and DasGupta, M and Varshney, R K and Pandey, M K (2020) Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and ‘Crack-Entry’ Legume Groundnut (Arachis hypogaea L.). Plants, 9 (276). pp. 1-24. ISSN 2223-7747
Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747
Gautami, B and Fonce´ka, D and Pandey, M K and Sujay, V and Bhanuprakash, A and Shah, T and Nigam, S N and Hoisington, D A and Varshney, R K and et al, . (2012) An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.). Plos ONE-Biotechnology, 7 (7). pp. 1-11.
Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology. ISSN 1432-2056
Janila, P and Rupavatharam, S and Sameer Kumar, C V and Samineni, S and Gaur, P M and Varshney, R K (2016) Technologies for Intensification of Production and Uses of Grain Legumes for Nutrition Security. Proceedings of the Indian National Science Academy, 82 (5). pp. 1541-1553. ISSN 0370-0046
Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424
Rostoks, N and Ramsay, L and MacKenzie, K and Cardle, L and Bhat, P R and Roose, M L and Svensson, J T and Stein, N and Varshney, R K and Marshall, D F and Graner, A and Close, T J and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, 103 (49). pp. 18656-18661. ISSN 1091-6490
Chaturvedi, S K and Jha, S K and Singh, N P and Gaur, P M and Varshney, R K (2018) Technological And Policy Intervention For Increasing Chickpea Production In India. Pulse India, 8 (1). pp. 7-12.
Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.
Saxena, R K and Sameer Kumar, C V and Bohra, A and Singh, I P and Singh, N P and Varshney, R K (2017) Pigeonpea Research for Enhancing Crop Productivity. Pulse India, 2 (7). pp. 8-10.
Gangola, M and Khedikar, Y and Gaur, P M and Baga, M and Varshney, R K and Chibbar, R (2012) Variation in important seed constituents among various chickpea genotypes. Quality Assurance and Safety of Crops & Foods, 4 (3). pp. 136-158. ISSN 1757-837X
Gumma, M K and Tsusaka, T W and Mohammed, I and Chavula, G and Ganga Rao, N V P R and Okori, P and Ojiewo, C O and Varshney, R K and Siambi, M and Whitbread, A M (2019) Monitoring Changes in the Cultivation of Pigeonpea and Groundnut in Malawi Using Time Series Satellite Imagery for Sustainable Food Systems. Remote Sensing (TSI), 11(12) (1475). pp. 1-23. ISSN 2072-4292
Akpo, E and Ojiewo, C O and Melesse, M B and Ganga Rao, N and Mwololo, J and Manyasa, E and Ojulong, H and Harawa, R and Varshney, R K (2020) Aggravated food insecurity in COVID-19 era: quality seed flow of adapted and nutrient-dense varieties is central to the recovery equation in the drylands. Romanian Journal of Applied Sciences and Technology, 2 (5). pp. 62-65. ISSN 2668-778X
Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463
Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322
Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports, 7 (9659). pp. 1-14. ISSN 2045-2322
Xia, Y and Li, R and Bai, G and Siddique, K H M and Varshney, R K and Baum, M and Yan, G and Guo, P (2017) Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific Reports, 7 (7870). pp. 1-10. ISSN 2045-2322
Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322
Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322
Atieno, J and Li, Y and Langridge, P and Dowling, K and Brien, C and Berger, B and Varshney, R K and Sutton, T (2017) Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping. Scientific Reports, 7 (1300). pp. 1-11. ISSN 2045-2322
Pandey, M K and Agarwal, G and Kale, S M and Clevenger, J and Nayak, S N and Sriswathi, M and Chitikineni, A and Chavarro, C and Chen, X and Upadhyaya, H D and Vishwakarma, M K and Leal-Bertioli, S and Liang, X and Bertioli, D J and Guo, B and Jackson, S A and Ozias-Akins, P and Varshney, R K (2017) Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports, 7. pp. 1-10. ISSN 2045-2322
Huang, L and Ren, X and Wu, B and Li, X and Chen, W and Zhou, X and Chen, Y and Pandey, M K and Jiao, Y and Luo, H and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2016) Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports, 6 (39478). pp. 1-10. ISSN 2045-2322
Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322
Sharma, M and Sengupta, A and Ghosh, R and Agarwal, G and Tarafdar, A and Nagavardhini, A and Pande, S and Varshney, R K (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (37353). 01-11. ISSN 2045-2322
Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322
Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322
Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322
Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H (2015) Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (8069). pp. 1-8. ISSN 2045-2322
Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322
Wang, X and Xu, P and Ren, Y and Yin, L and Li, S and Wang, Y and Shi, Y and Li, H and Cao, X and Chi, X and Yu, T and Pandey, M K and Varshney, R K and Yuan, M (2020) Genome-wide identification of meiotic recombination hot spots detected by SLAF in peanut (Arachis hypogaea L.). Scientific Reports (TSI), 10 (1). ISSN 2045-2322
Liu, H and Liang, X and Lu, Q and Li, H and Liu, H and Li, S and Varshney, R K and Hong, Y and Chen, X (2020) Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition. Scientific Reports (TSI), 10 (1). pp. 1-12. ISSN 2045-2322
Gopalakrishnan, S and Thakur, V and Saxena, R K and Vadlamudi, S and Purohit, S and Kumar, V and Rathore, A and Chitikineni, A and Varshney, R K (2020) Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Scientific Reports (TSI), 10 (1). ISSN 2045-2322
Bhogireddy, S and Xavier, A and Garg, V and Layland, N and Arias, R and Payton, P and Nayak, S N and Pandey, M K and Puppala, N and Varshney, R K (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports (TSI), 10 (1). ISSN 2045-2322
Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322
Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, C V S and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports (TSI), 10 (1). pp. 1-17. ISSN 2045-2322
Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322
Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322
Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322
Roorkiwal, M and Jarquin, D and Singh, M K and Gaur, P M and Bharadwaj, C and Rathore, A and Howard, R and Srinivasan, S and Jain, A and Garg, V and Kale, S M and Chitikineni, A and Tripathi, S and Jones, E and Robbins, K R and Crossa, J and Varshney, R K (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea. Scientific Reports (TSI), 8 (1) (11701). pp. 1-11. ISSN 2045-2322
Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322
Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322
Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806
Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.
Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Rathore, A and Varshney, R K (2015) The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. SpringerPlus, 4 (31). pp. 1-10. ISSN 2193-1801
Akpo, E and Feleke, G and Fikre, A and Chichaybelu, M and Ojiewo, C O and Varshney, R K (2020) Analyzing Pathways of Nurturing Informal Seed Production into Formal Private Ventures for Sustainable Seed Delivery and Crop Productivity: Experiences from Ethiopia. Sustainability, 12 (6828). pp. 1-18.
Mir, R R and Zaman-Allah, M and Sreenivasulu, N and Trethowan, R and Varshney, R K (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. TAG Theoretical and Applied Genetics, 125 (4). pp. 625-645. ISSN 1432-2242
Bohra, A and Saxena, R K and Gnanesh, B N and Saxena, K B and Byregowda, M and Rathore, A and Kavi Kishor, P B and Cook, D R and Varshney, R K (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. TAG Theoretical and Applied Genetics, 125 (6). pp. 1325-1338. ISSN 1432-2242
Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242
Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 1432-2242
Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.
Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Khal, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. TAG Theoretical and Applied Genetics, 120 (7). pp. 1415-1441.
Varshney, R K and Bertioli, D J and Moretzsohn, M C and Vadez, V and Krishnamurthy, L and Aruna, R and Nigam, S N and Moss, B J and Kannan, S and Ravi, K and He, G and Knapp, S J and Hoisington, D A (2009) The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 118 (4). pp. 729-739.
Stein, N and Prasad, M and Scholz, U and Thiel, T and Zhang, H and Wolf, M and Kota, R and Varshney, R K and Perovic, D and Grosse, I and Graner, A (2007) A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. TAG Theoretical and Applied Genetics, 114 (5). pp. 823-839. ISSN 1432-2242
Aggarwal, R K and Hendre, P S and Varshney, R K and Bhat, P R and Krishnakumar, V and Singh, L (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. TAG Theoretical and Applied Genetics, 114 (2). pp. 359-372. ISSN 1432-2242
Varshney, R K and Beier, U and Khlestkina, K E and Kota, R and Korzun, V and Graner, A and Borner, A (2007) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. TAG Theoretical and Applied Genetics, 114. pp. 1105-1116.
Varshney, R K and Marcel, T C and Ramsay, L and Russell, J and Roder, M S and Stein, N and Waugh, R and Langridge, P and Niks, R E and Graner, A (2007) A high density barley microsatellite consensus map with 775 SSR loci. TAG Theoretical and Applied Genetics, 114 (6). pp. 1091-1103. ISSN 1432-2242
Marcel, T C and Varshney, R K and Barbieri, M and Jafary, H and Kock, M J D de and Graner, A and Niks, R E (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. TAG Theoretical and Applied Genetics, 114 (3). pp. 487-500. ISSN 1432-2242
Varshney, R K and Grosse, I and Hahnel, U and Siefken, R and Prasad, M and Stein, N and Langridge, P and Altschmied, L and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. TAG Theoretical and Applied Genetics, 113 (2). pp. 239-250. ISSN 1432-2242
Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421
Kumari, V and Gowda, M V C and Tasiwal, V and Pandey, M K and Bhat, R S and Mallikarjuna, N and Upadhyaya, H D and Varshney, R K (2014) Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). The Crop Journal, 2 (2 - 3). pp. 110-119. ISSN 2214-5141
Shasidhar, Y and Variath, M T and Vishwakarma, M K and Manohar, S S and Gangurde, S S and Sriswathi, M and Sudini, H and Dobariya, K L and Bera, S K and Radhakrishnan, T and Pandey, M K and Janila, P and Varshney, R K (2020) Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. The Crop Journal (TSI), 8 (1). pp. 1-15. ISSN 22145141
Sameer Kumar, C V and Wani, S P and Nagesh Kumar, M V and Jaganmohan Rao, P and Saxena, K B and Hingane, A J and Sudhakar, C and Pushpavalli, S N V C L and Yamini, K N and Shruthi, H B and Saxena, R K and Varshney, R K (2016) Hybrid Technology–a new vista in pigeonpea breeding. The Journal of Research PJTSAU, 44 (4). pp. 1-13. ISSN 2395-5945
Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372
Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372
Sinha, P and Saxena, K B and Saxena, R K and Singh, V K and Suryanarayana, V and Sameer Kumar, C V and Katta, M A V S and Khan, A W and Varshney, R K (2015) Association of Gene with Cytoplasmic Male Sterility in Pigeonpea. The Plant Genome, 8 (2). pp. 1-12. ISSN 1940-3372
Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372
Gowda, C L L and Upadhyaya, H D and Sharma, S and Varshney, R K and Dwivedi, S L (2013) Exploiting genomic resources for efficient conservation and utilization of chickpea, groundnut, and pigeonpea collections for crop improvement. The Plant Genome, 6 (3). pp. 1-28. ISSN 1940-3372
Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372
Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Scully, B T and Guo, B (2013) Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut. The Plant Genome, 6 (3). pp. 1-10. ISSN 1940-3372
Varshney, R K and Roorkiwal, M and Nguyen, T (2013) Legume Genomics: From Genomic Resources to Molecular Breeding. The Plant Genome, 6 (3). pp. 1-7. ISSN 1940-3372
Roorkiwal, M and Sawargaonkar, S L and Chitikineni, A and Thudi, M and Saxena, R K and Upadhyaya, H D and Vales, M I and Riera-Lizarazu, O and Varshney, R K (2013) Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform. The Plant Genome, 6 (2). pp. 1-10. ISSN 1940-3372
Khera, P and Upadhyaya, H D and Pandey, M K and Roorkiwal, M and Sriswathi, M and Janila, P and Guo, Y and McKain, M R and Nagy, E D and Knapp, S J and Leebens-Mack, J and Conner, J A and Ozias-Akins, P and Varshney, R K (2013) Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays. The Plant Genome, 6 (3). pp. 1-11. ISSN 1940-3372
Lokya, V and Parmar, S and Pandey, A K and Sudini, H K and Huai, D and Ozias-Akins, P and Foyer, C H and Nwosu, C V and Karpinska, B and Baker, A and Xu, P and Liao, B and Mir, R R and Chen, X and Guo, B and Nguyen, H T and Kumar, R and Bera, S K and Singam, P and Kumar, A and Varshney, R K and Pandey, M K (2023) Prospects for developing allergen-depleted food crops. The Plant Genome (TSI), 16 (4). pp. 1-32. ISSN 1940-3372
Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372
Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372
Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372
Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372
Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16. pp. 1-19. ISSN 1940-3372
Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genesand diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16 (4). pp. 1-19. ISSN 1940-3372
Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372
Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372
Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372
Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372
Barmukh, R and Roorkiwal, M and Jaba, J and Chitikineni, A and Mishra, S P and Sagurthi, S R and Munghate, R and Sharma, H C and Varshney, R K (2020) Development of a dense genetic map and QTL analysis for pod borer Helicoverpa armigera (Hübner) resistance component traits in chickpea ( Cicer arietinum L .). The Plant Genome (TSI). pp. 1-15. ISSN 1940-3372
Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372
Jensen, S E and Charles, J R and Muleta, K and Bradbury, P J and Casstevens, T and Deshpande, S P and Gore, M A and Gupta, R and Ilut, D C and Johnson, L and Lozano, R and Miller, Z and Ramu, P and Rathore, A and Romay, M C and Upadhyaya, H D and Varshney, R K and Morris, G P and Pressoir, G and Buckler, E S and Ramstein, G P (2020) A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction. The Plant Genome (TSI), 13 (1). pp. 1-15. ISSN 1940-3372
Rezaei, M K and Deokar, A A and Arganosa, G and Roorkiwal, M and Pandey, S K and Warkentin, T D and Varshney, R K and Tar′an, B (2019) Mapping Quantitative Trait Loci for Carotenoid Concentration in Three F2 Populations of Chickpea. The Plant Genome (TSI), 12 (3). pp. 1-12. ISSN 1940-3372
Saxena, R K and Rathore, A and Bohra, A and Yadav, P and Das, R R and Khan, A W and Singh, V K and Chitikineni, A and Singh, I P and Sameer Kumar, C V and Varshney, R K (2018) Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. The Plant Genome (TSI), 11 (3). pp. 1-10. ISSN 1940-3372
Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412
Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242
Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242
Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752
Saxena, R K and Obala, J and Sinjushin, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theoretical and Applied Genetics, 130 (9). pp. 1773-1784. ISSN 0040-5752
Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752
Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706
Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752
Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752
Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752
Bohra, A and Pandey, M K and Jha, U C and Singh, B and Singh, I P and Datta, D and Chaturvedi, S K and Nadarajan, N and Varshney, R K (2014) Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. pp. 1-29. ISSN 1432-2242
Ali, L and Madrid, E and Varshney, R K and Azam, S and Millan, T and Rubio, J and Gill, J (2014) Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theoretical and Applied Genetics, 127 (2). pp. 481-488. ISSN 0040-5752
Varshney, R K and Pandey, M K and Janila, P and Nigam, S N and Sudini, H and Gowda, M V C and Sriswathi, M and Radhakrishnan, T and Manohar, S S and Nagesh, P (2014) Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics, 127 (8). pp. 1771-1781. ISSN 0040-5752
Ravi, K and Vadez, V and Isobe, S and Mir, R R and Guo, Y and Nigam, S N and Gowda, M V C and Radhakrishnan, T and Bertioli, D J and Knapp, S J and Varshney, R K (2011) Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 122 (6). pp. 1119-1132. ISSN 0040-5752
Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2010) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics, 121 (05). pp. 971-984. ISSN 1432-2242
Nayak, S N and Zhu, H and Varghese, N and Datta, S and Choi, H K and Horres, R and Jüngling, R and Singh, J and Kavi Kishor, P B and Sivaramakrishnan, S and Hoisington, D A and Kahl, G and Winter, P and Cook, D R and Varshney, R K (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theoretical and Applied Genetics, 120 (7). pp. 1415-1441. ISSN 0040-5752
Saxena, R K and Hake, A and Bohra, A and Khan, A W and Hingane, A and Sultana, R and Singh, I P and Naik, S J S and Varshney, R K (2020) A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea. Theoretical and Applied Genetics (TSI). ISSN 0040-5752
Pandey, M K and Chaudhari, S and Jarquin, D and Janila, P and Crossa, J and Patil, S C and Sundravadana, S and Khare, D and Bhat, R S and Radhakrishnan, T and Hickey, J M and Varshney, R K (2020) Genome-based trait prediction in multi- environment breeding trials in groundnut. Theoretical and Applied Genetics (TSI). ISSN 0040-5752
Zhang, Q and Xu, M and Xia, X and Komatsuda, T and Varshney, R K and Shi, K (2020) Crop genetics research in Asia: improving food security and nutrition. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1339-1344. ISSN 0040-5752
Khan, S A and Chen, H and Deng, Y and Chen, Y and Zhang, C and Cai, T and Ali, N and Mamadou, G and Xie, D and Guo, B and Varshney, R K and Zhuang, W (2020) High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea). Theoretical and Applied Genetics (TSI), 133 (7). pp. 2239-2257. ISSN 0040-5752
Pandey, M K and Pandey, A K and Kumar, R and Nwosu, C V and Guo, B and Wright, G C and Bhat, R S and Chen, X and Bera, S K and Yuan, M and Jiang, H and Faye, I and Radhakrishnan, T and Wang, X and Liang, X and Liao, B and Zhang, X and Varshney, R K and Zhuang, W (2020) Translational genomics for achieving higher genetic gains in groundnut. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1679-1702. ISSN 0040-5752
Jaganathan, D and Bohra, A and Thudi, M and Varshney, R K (2020) Fine mapping and gene cloning in the post-NGS era: advances and prospects. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1791-1810. ISSN 0040-5752
Bohra, A and Saxena, K B and Varshney, R K and Saxena, R K (2020) Genomics-assisted breeding for pigeonpea improvement. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1721-1737. ISSN 0040-5752
Luo, H and Pandey, M K and Zhi, Y and Zhang, H and Xu, S and Guo, J and Wu, B and Chen, H and Ren, X and Zhou, X and Chen, Y and Chen, W and Huang, L and Liu, N and Sudini, H and Varshney, R K and Lei, Y and Liao, B and Jiang, H (2020) Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6. Theoretical and Applied Genetics (TSI). ISSN 0040-5752
Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752
Saxena, R K and Kale, S and Mir, R R and Mallikarjuna, N and Yadav, P and Das, R R and Molla, J and Sonnappa, M and Ghanta, A and Narasimhan, Y and Rathore, A and Kumar, C V S and Varshney, R K (2019) Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theoretical and Applied Genetics (TSI), 133 (3). pp. 737-749. ISSN 0040-5752
Priya, M and Dhanker, O P and Siddique, K H M and HanumanthaRao, B and Nair, R M and Pandey, S and Singh, S and Varshney, R K and Prasad, P V V and Nayyar, H (2019) Drought and heat stress-related proteins: an update about their functional relevance in imparting stress tolerance in agricultural crops. Theoretical and Applied Genetics (TSI), 132 (6). pp. 1607-1638. ISSN 0040-5752
Dodia, S M and Joshi, B and Gangurde, S S and Thirumalaisamy, P P and Mishra, G P and Narandrakumar, D and Soni, P and Rathnakumar, A L and Dobaria, J R and Sangh, C and Chitikineni, A and Chanda, S V and Pandey, M K and Varshney, R K and Thankappan, R (2019) Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics (TSI), 132 (4). pp. 1001-1016. ISSN 0040-5752
Godwin, I D and Rutkoski, J and Varshney, R K and Hickey, L T (2019) Technological perspectives for plant breeding. Theoretical and Applied Genetics (TSI), 132 (3). pp. 555-557. ISSN 0040-5752
Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752
Saxena, R K and Patel, K and Sameer Kumar, C V and Tyagi, K and Saxena, K B and Varshney, R K (2018) Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.). Theoretical and Applied Genetics (TSI). pp. 1-10. ISSN 0040-5752
Yu, B and Jiang, H and Pandey, M K and Huang, L and Huai, D and Zhou, X and Kang, Y and Varshney, R K and Sudini, H and Ren, X and Luo, H and Liu, N and Chen, W and Guo, J and Li, W and Ding, Y and Jiang, Y and Lei, Y and Liao, B (2020) Identification of Two Novel Peanut Genotypes Resistant to Aflatoxin Production and Their SNP Markers Associated with Resistance. Toxins (TSI), 12 (156). pp. 1-16. ISSN 2072-6651
Pandey, M K and Kumar, R and Pandey, A K and Soni, P and Gangurde, S S and Sudini, H K and Fountain, J G and Liao, B and Desmae, H and Okori, P and Chen, X and Jiang, H and Mendu, V and Falalou, H and Njoroge, S and Mwololo, J K and Guo, B and Zhuang, W and Wang, X and Liang, X and Varshney, R K (2019) Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices. Toxins (TSI), 11(6) (315). pp. 1-21. ISSN 2072-6651
Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799
Varshney, R K and Glaszmann, Jean-Christophe and Leung, H and Ribaut, J M (2010) More genomic resources for less-studied crops. Trends in Biotechnology, 28 (9). pp. 452-460. ISSN 0167-7799
Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.
Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.
Crossa, J and Pérez-Rodríguez, P and Cuevas, J and Montesinos-López, O and Jarquín, D and de los Campos, G and Burgueño, J and González-Camacho, J M and Pérez-Elizalde, S and Beyene, Y and Dreisigacker, S and Singh, R and Zhang, X and Gowda, M and Roorkiwal, M and Rutkoski, J and Varshney, R K (2017) Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science, 22 (11). pp. 961-975. ISSN 13601385
Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)
Varshney, R K and Bansal, K C and Aggarwal, P K and Datta, S K and Craufurd, P Q (2011) Agricultural biotechnology for crop improvement in a variable climate: hope or hype? Trends in Plant Science, 16 (7). pp. 363-371.
Varshney, R K and Graner, A and Sorrells, M E (2005) Genomics-assisted breeding for crop improvement. Trends in Plant Science, 10 (12). pp. 621-630. ISSN 1360-1385
Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385
Khan, A W and Garg, V and Roorkiwal, M and Golicz, A A and Edwards, D and Varshney, R K (2020) Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement. Trends in Plant Science (TSI), 25 (2). pp. 148-158. ISSN 1360-1385
Szira, F and Balint, A and Galiba, G and Varshney, R K and Borner, A (2006) Mapping of QTLs for drought tolerance in barley at different development stages. Vorträge Pflanzenzüchtung, 70. pp. 113-115.
Ojiewo, C O and Keatinge, D J D H and Hughes, J and Tenkouano, A and Nair, R K and Varshney, R K and Siambi, S and Monyo, E S and Ganga Rao, N V P R and Silim, S (2015) The Role of Vegetables and Legumes in Assuring Food, Nutrition, and Income Security for Vulnerable Groups in Sub-Saharan Africa. World Medical & Health Policy, 7 (3). pp. 187-210. ISSN 2153-2028