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A

Abberton, M and Batley, J and Bentley, A and Bryant, J and Cai, H and Cockram, J and Oliveira, A C D and Cseke, L J and Dempewolf, H and Pace, C D and Edwards, D and Gepts, P and Greenland, A and Hall, A E and Henry, R and Hori, K and Howe, G T and Hughes, S and Humphreys, M and Lightfoot, D and Marshall, A and Mayes, S and Nguyen, H T and Ogbonnaya, F C and Ortiz, R and Paterson, A H and Tuberosa, R and Valliyodan, B and Varshney, R K and Yano, M (2016) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal, 14 (04). 01-04. ISSN 1467-7644

Adepehin, J O and Enujiugha, V N and Badejo, A A and Young, G M and Odeny, D A and Wu, F (2018) Bacterial ecology and rheological parameters of multigrain gluten-free sourdoughs. LWT-Food Science and Technology (TSI), 96. pp. 344-349. ISSN 00236438

Agarwal, G and Clevenger, J and Kale, S M and Wang, H and Pandey, M K and Choudhary, D and Yuan, M and Wang, X and Culbreath, A K and Holbrook, C C and Liu, X and Varshney, R K and Guo, B (2020) A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports (TSI), 9 (1). pp. 1-13. ISSN 2045-2322

Agarwal, G and Clevenger, J and Pandey, M K and Wang, H and Shasidhar, Y and Chu, Y and Fountain, J C and Choudhary, D and Culbreath, A K and Liu, X and Huang, G and Wang, X and Deshmukh, R and Holbrook, C C and Bertioli, D J and Ozias-Akins, P and Jackson, S A and Varshney, R K and Guo, B (2018) High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal (TSI), 16 (11). pp. 1954-1967. ISSN 14677644

B

Barkley, N A and Upadhyaya, H D and Liao, B and Holbrook, C C (2016) Global Resources of Genetic Diversity in Peanut. In: Peanuts: Genetics, Processing, and Utilization. Academic Press and AOCS Press, pp. 67-109. ISBN 9781630670382

Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706

Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372

Baysan, C and Dar, M H and Emerick, K and Li, Z and Sadoulet, E (2024) The agricultural wage gap within rural villages. Journal of Development Economics, 168. ISSN 0304-3878

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Niederhuth, C E and Umale, P and Araújo, A C G and Kozik, A and Kim, K D and Burow, M D and Varshney, R K and Wang, X and Zhang, X and Barkley, N and Guimarães, P M and Isobe, S and Guo, B and Liao, B and Stalker, H T and Schmitz, R J and Scheffler, B E and Leal-Bertioli, S C M and Xun, X and Jackson, S A and Michelmore, R and Ozias-Akins, P (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics, 48 (-). pp. 438-446. ISSN 1546-1718

Bertioli, D J and Jenkins, J and Clevenger, J and Dudchenko, O and Gao, D and Seijo, G and Leal-Bertioli, S C M and Ren, L and Farmer, A D and Pandey, M K and Samoluk, S S and Abernathy, B and Agarwal, G and Ballén-Taborda, C and Cameron, C and Campbell, J and Chavarro, C and Chitikineni, A and Chu, Y and Dash, S and El Baidouri, M and Guo, B and Huang, W and Kim, K D and Korani, W and Lanciano, S and Lui, C G and Mirouze, M and Moretzsohn, M C and Pham, M and Shin, J H and Shirasawa, K and Sinharoy, S and Sreedasyam, A and Weeks, N and Zhang, X and Zheng, Z and Sun, Z and Froenicke, L and Aiden, E L and Michelmore, R and Varshney, R K and Holbrook, C C and Cannon, E K S and Scheffler, B E and Grimwood, J and Ozias-Akins, P and Cannon, S B and Jackson, S A and Schmutz, J (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics (TSI), 51 (5). pp. 877-884. ISSN 1061-4036

Bezak, N and Mikoš, M and Borrelli, P and Alewell, C and Alvarez, P and Anache, J A J and Baartman, J and Ballabio, C and Biddoccu, M and Cerdà, A and Chalise, D and Chen, S and Chen, W and De Girolamo, A M and Gessesse, G D and Deumlich, D and Diodato, N and Efthimiou, N and Erpul, G and Fiener, P and Freppaz, M and Gentile, F and Gericke, A and Haregeweyn, N and Hu, B and Jeanneau, A and Kaffas, K and Kiani-Harchegani, M and Villuendas, I L and Li, C and Lombardo, L and López-Vicente, M and Lucas-Borja, M E and Maerker, M and Miao, C and Modugno, S and Möller, M and Naipal, V and Nearing, M and Owusu, S and Panday, D and Patault, E and Patriche, C V and Poggio, L and Portes, R and Quijano, L and Rahdari, M R and Renima, M and Ricci, G F and Rodrigo-Comino, J and Saia, S and Samani, A N and Schillaci, C and Syrris, V and Kim, H S and Spinola, D N and Oliveira, Paulo Tarso and Teng, H and Thapa, R and Vantas, K and Vieira, D and Yang, J E and Yin, S and Zema, D A and Zhao, G and Panagos, P (2021) Soil erosion modelling: A bibliometric analysis. Environmental Research (TSI), 197. pp. 1-16. ISSN 0013-9351

Bhaskarla, V and Zinta, G and Ford, R and Jain, M and Varshney, R K and Mantri, N (2020) Comparative Root Transcriptomics Provide Insights into Drought Adaptation Strategies in Chickpea (Cicer arietinum L.). International Journal of Molecular Sciences (TSI), 21 (1781). pp. 1-20. ISSN 1422-0067

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Bhat, R S and Kolekar, R M and Asha, B and Sukruth, M and Shirasawa, K and Sujay, V and Khedikar, Y and Sarvamangala, C and Gowda, M V C and Motagi, B N and Varshney, R K (2015) Mapping late leaf spot and rust resistance using an improved consensus map in peanut (Arachis hypogaea L.). In: Proceedings of the 8th International Conference of the Peanut Research Community-Advances in Arachis through Genomics and Biotechnology (AAGB-2015), November 4 - 7, 2015, Brisbane, Australia.

Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X

Black, C R and Tang, D Y and Ong, C K and Solon, A and Simmonds, L P (1985) Effects of soil moisture stress on the water relations and water use of groundnut stands. New Phytologist, 100 (3). pp. 313-328. ISSN 1469-8137

Borrelli, P and Alewell, C and Alvarez, P and Anache, J A A and Baartman, J and Ballabio, C and Bezak, N and Biddoccu, M and Cerdà, A and Chalise, D and Chen, S and Chen, W and De Girolamo, A M and Gessesse, G D and Deumlich, D and Diodato, N and Efthimiou, N and Erpul, G and Fiener, P and Freppaz, M and Gentile, F and Gericke, A and Haregeweyn, N and Hu, B and Jeanneau, A and Kaffas, K and Kiani-Harchegani, M and Villuendas, I L and Li, C and Lombardo, L and López-Vicente, M and Lucas-Borja, M E and Märker, M and Matthews, F and Miao, C and Mikoš, M and Modugno, S and Möller, M and Naipal, V and Nearing, M and Owusu, S and Panday, D and Patault, E and Patriche, C V and Poggio, L and Portes, R and Quijano, L and Rahdari, M R and Renima, M and Ricci, G F and Rodrigo-Comino, J and Saia, S and Samani, A N and Schillaci, C and Syrris, V and Kim, H S and Spinola, D N and Oliveira, P T and Teng, H and Thapa, R and Vantas, K and Vieira, D and Yang, J E and Yin, S and Zema, D A and Zhao, G and Panagos, P (2021) Soil erosion modelling: A global review and statistical analysis. Science of The Total Environment (TSI), 780. pp. 1-18. ISSN 0048-9697

Boshou, L and Naixiong, D and Yujun, T and Nigam, S N (1995) Reaction of Some ICRISAT Groundnut Varieties to Bacterial Wilt Disease in China. International Arachis Newsletter, 15 (1). pp. 40-41.

Brouziyne, Y and Bilali, A E and Epule, T E and Ongoma, V and Elbeltagi, A and Hallam, J and Moudden, F and Al-Zubi, M and Vadez, V and McDonnell, R (2023) Towards Lower Greenhouse Gas Emissions Agriculture in North Africa through Climate-Smart Agriculture: A Systematic Review. Climate, 11 (7). pp. 1-14. ISSN 2225-1154

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

C

Carberry, P S and Geng, S and Wei-Li, L and Ling-ling, L (2015) Systems research helping to meet the needs and managing the trade-offs of a changing world. Journal of Integrative Agriculture, 14 (8). pp. 1475-1477. ISSN 2095-3119

Chaohong, Z and Saxena, K B and Zhenghong, Li and Xuxiao, Z and Shiying, Y (2001) Pigeonpea diseases in China. International Chickpea and Pigeonpea Newsletter, 8. pp. 39-41. ISSN 1023-4861

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S and Zheng, Y and Ma, S and Tang, R and Varshney, R K and Zhuang, W (2016) Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL). Plant Biotechnol Journal, 14 (2). pp. 682-698. ISSN 2349-6738

Chen, H and Zhang, C and Cai, T C and Deng, Y and Zhou, S B and Varshney, R K and Zhuang, W J (2017) Characterization of low Ca2+ stress-induced embryo apoptosis response genes and their regulation of embryo development. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Chen, X and Li, H and Pandey, M K and Yang, Q and Wang, X and Garg, V and Li, H and Chi, X and Doddamani, D and Hong, Y and Upadhyaya, H D and Guo, H and Khan, A W and Zhu, F and Zhang, X and Pan, L and Pierce, G J and Zhou, G and Krishnamohan, K A V S and Chen, M and Zhong, N and Agarwal, G and Li, S and Chitikineni, A and Zhang, G Q and Sharma, S and Chen, N and Liu, H and Janila, P and Li, S and Wang, M and Wang, T and Sun, J and Li, X and Li, C and Wang, M and Yu, L and Wen, S and Singh, S and Yang, Z and Zhao, J and Zhang, C and Yu, Y and Bi, J and Zhang, X and Liu, Z J and Paterson, A H and Wang, S and Liang, X and Varshney, R K and Yu, S (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proceedings of the National Academy of Sciences, 113 (24). pp. 6785-6790. ISSN 0027-8424

Chen, X and Lu, Q and Liu, H and Zhang, J and Hong, Y and Lan, H and Li, H and Wang, J and Liu, H and Li, S and Pandey, M K and Zhang, Z and Zhou, G and Yu, J and Zhang, G and Yuan, J and Li, X and Wen, S and Meng, F and Yu, S and Wang, X and Siddique, K H M and Liu, Z J and Paterson, A H and Varshney, R K and Liang, X (2019) Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant (TSI), 12 (7). pp. 920-934. ISSN 16742052

Chen, X and Yang, Y and Li, H and Li, H and Hong, Y and Pan, L and Chen, N and Zhu, F and Chi, X and Zhu, W and Chen, M and Liu, H and Yang, Z and Zhang, E and Wang, T and Zhong, N and Wang, M and Liu, H and Wen, S and Li, X and Zhou, G and Li, S and Wu, H and Varshney, R K and Liang, X and Yu, S (2016) Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaea L.). Plant Biotechnology Journal, 14 (05). pp. 1215-1224. ISSN 1467-7652

Chen, X and Zhu, W and Azam, S and Li, H and Zhu, F and Li, H and Hong, Y and Liu, H and Zhang, E and Wu, H and Yu, S and Zhou, G and Li, S and Zhong, N and Wen, S and Li, X and Knapp, S J and Ozias-Akins, P and Varshney, R K and Liang, X (2013) Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion. Plant Biotechnology Journal, 11 (1). pp. 115-127.

Cuevas, H E and Zhou, C and Tang, H and Khadke, P P and Das, S and Lin, Y R and Ge, Z and Clemente, T and Upadhyaya, H D and Hash, C T and Paterson, A W (2016) The evolution of photoperiod-insensitive flowering in sorghum, a genomic model for panicoid grasses. Molecular Biology and Evolution, 33 (09). pp. 2417-2428. ISSN 0737-4038

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Dalvi, V A and Saxena, K B and Luo, R H and Li, Y R (2010) An overview of male-sterility systems in pigeonpea [Cajanus cajan (L.) Millsp.]. Euphytica, 173 (3). pp. 397-407. ISSN 0014-2336

Defourny, P and Bontemps, S and Bellemans, N and Cara, C and Dedieu, G and Guzzonato, E and Hagolle, O and Inglada, J and Nicola, L and Rabaute, T and Savinaud, M and Udroiu, C and Valero, S and Bégué, A and Dejoux, J F and El Harti, A and Ezzahar, J and Kussul, N and Labbassi, K and Lebourgeois, V and Miao, Z and Newby, T and Nyamugama, A and Salh, N and Shelestov, A and Simonneaux, V and Traore, P S and Traore, S S and Koetz, B (2019) Near real-time agriculture monitoring at national scale at parcel resolution: Performance assessment of the Sen2-Agri automated system in various cropping systems around the world. Remote Sensing of Environment (TSI), 221. pp. 551-568. ISSN 00344257

Deng, Q and Du, P and Gangurde, S S and Hong, Y and Xiao, Y and Hu, D and Li, H and Lu, Q and Li, S and Liu, H and Wang, R and Huang, L and Wang, W and Garg, V and Liang, X and Varshney, R K and Chen, X and Liu, H (2024) ScRNA-seq reveals dark- and light-induced differentially expressed gene atlases of seedling leaves in Arachis hypogaea L. Plant Biotechnology Journal (TSI), 22 (7). pp. 1848-1866. ISSN 1467-7644

Devos, K M and Qi, P and Bahri, B A and Gimode, D M and Jenike, K and Manthi, S J and Lule, D and Lux, T and Martinez-Bello, L and Pendergast IV, T H and Plott, C and Saha, D and Sidhu, G S and Sreedasyam, A and Wang, X and Wang, H and Wright, H and Zhao, J and Deshpande, S P and Villiers, S de and Dida, M M and Grimwood, J and Jenkins, J and Lovell, J and Mayer, K F X and Mneney, E E and Ojulong, H F and Schatz, M C and Schmutz, J and Song, B and Tesfaye, K and Odeny, D A (2023) Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nature Communications (TSI), 14. pp. 1-15. ISSN 2041-1723

Dhillon, M K and Sharma, H C and Reddy, B V S and Singh, R and Naresh, J S and Kai, Z (2005) Relative susceptibility of different male-sterile cytoplasms in sorghum to shoot fly, Atherigona soccata. Euphytica, 144 (3). pp. 275-283. ISSN 0014-2336

Di, T and Afzal, M R and Yoshihashi, T and Deshpande, S and Zhu, Y and Subbarao, G V (2017) Further insights into underlying mechanisms for the release of biological nitrification inhibitors from sorghum roots. Plant and Soil. pp. 1-12. ISSN 0032-079X

Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229

Divakara, B N and Upadhyaya, H D and Fandohan, B (2012) Identification and divergence studies of genotypes of Tamarindus indica (Fabaceae) with superior pod traits. International Journal of Biological and Chemical Sciences. pp. 1-19. (In Press)

Dixon, J M and Weerahewa, J and Hellin, J and Rola-Rubzen, M F and Huang, J and Shalander, K and Das, A and Qureshi, M E and Krupnik, T J and Shideed, K and Jat, M L and Prasad, P V V and Yadav, S and Irshad, A and Asanaliev, A and Abugalieva, A and Karimov, A and Bhattarai, B and Balgos, C Q and Benu, F and Ehara, H and Pant, J and Sarmiento, J M P and Newby, J C and Pretty, J and Tokuda, H and Weyerhaeuser, H and Digal, L N and Li, L and Sarkar, M A R and Abedin, M Z and Schreinemachers, P and Grafton, Q and Sharma, R C and Saidzoda, S and Lopez-Ridaura, S and Coffey, S and Kam, S P and Win, S S and Praneetvatakul, S and Maraseni, T and Touch, V and Liang, W and Saharawat, Y S and Timsina, J (2021) Response and resilience of Asian agrifood systems to COVID-19: An assessment across twenty-five countries and four regional farming and food systems. Agricultural Systems (TSI), 193. pp. 1-19. ISSN 0308-521X

Duc, G and Agrama, H and Bao, S and Berger, J and Bourion, V and De Ron, A M and Gowda, C L L and Mikic, A and Millot, D and Singh, K B and Tullu, A and Vandenberg, A and Vaz Patto, M C and Warkentin, T D and Zong, X (2015) Breeding Annual Grain Legumes for Sustainable Agriculture:New Methods to Approach Complex Traits and Target New Cultivar Ideotypes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 381-411. ISSN 0735-2689

Dwivedi, S L and Gurtu, S and Chandra, S and Yuejin, W and Nigam, S N (2001) Assessment of genetic diversity among selected groundnut germplasm. I: RAPD analysis. Plant Breeding, 120 (4). pp. 345-349. ISSN 0179-9541

Dwivedi, S L and Upadhyaya, H D and Senthilvel, S and Hash, C T and Fukunaga, K and Diao, X and Santra, D and Baltensperge, D and Prasad, M (2012) Millets: Genetic and Genomic Resources. In: Plant Breeding Reviews. Wiley-Blackwell, Hoboken, New Jersey, pp. 247-375. ISBN 9781118100509

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Falconnier, G N and Corbeels, M and Boote, K J and Affholder, F and Adam, M and MacCarthy, D S and Ruane, A C and Nendel, C and Whitbread, A M and Justes, E and Ahuja, L R and Akinseye, F M and Alou, I N and Amouzou, K A and Anapalli, S S and Baron, C and Basso, B and Baudron, F and Bertuzzi, P and Challinor, A J and Chen, Y and Deryng, D and Elsayed, M L and Faye, B and Gaiser, T and Galdos, M and Gayler, S and Gerardeaux, E and Giner, M and Grant, B and Hoogenboom, G and Ibrahim, E S and Kamali, B and Kersebaum, K C and Kim, S H and van der Laan, M and Leroux, L and Lizaso, J I and Maestrini, B and Meier, E A and Mequanint, F and Ndoli, A and Porter, C H and Priesack, E and Ripoche, D and Sida, T and Singh, U and Smith, W and Srivastava, A and Sinha, S and Tao, F and Thorburn, P J and Timlin, D and Traore, B and Twine, T and Webber, H (2020) Modelling climate change impacts on maize yields under low nitrogen input conditions in sub‐Saharan Africa. Global Change Biology (TSI). pp. 1-23. ISSN 1354-1013

Farkhari, Md and et al, . (2011) Recombination frequency variation in maize as revealed by genomewide single-nucleotide polymorphisms. Plant Breeding, 130 (5). pp. 533-539. ISSN 1439-0523

Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322

Fountain, J C and Khera, P and Yang, L and Nayak, S N and Scully, B T and Lee, R D and Chen, Z Y and Kemerait, R C and Varshney, R K and Guo, B (2015) Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. The Crop Journal, 3 (3). pp. 229-237. ISSN 2095-5421

Fountain, J C and Koh, J and Pandey, M K and Zhuang, W and Chen, Z Y and Kemerait, R C and Chen, S and Varshney, R K and Guo, B (2018) Proteomic Profile of Aspergillus flavus responses to oxidative stress. Phytopathology (TSI), 108 (10). p. 102. ISSN 0031-949X

Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322

Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180

Foyer, C H and Lam, H M and Nguyen, H T and Siddique, K H M and Varshney, R K and Colmer, T D and Cowling, W and Bramley, H and Mori, T A and Hodgson, J M and Cooper, J W and Miller, A J and Kunert, K and Vorster, J and Cullis, C and Ozga, J A and Wahlqvist, M L and Liang, Y and Shou, H and Shi, K and Yu, J and Fodor, N and Kaiser, B N and Wong, F L and Valliyodan, B and Considine, M J (2016) Neglecting legumes has compromised human health and sustainable food production. Nature Plants, 2 (16112). 01-10. ISSN 2055-0278

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Gangurde, S S and Kumar, R and Pandey, A K and Burow, M and Laza, H E and Nayak, S N and Guo, B and Liao, B and Bhat, R S and Madhuri, N and Hemalatha, S and Sudini, H and Janila, P and Latha, P and Khan, H and Motagi, B N and Radhakrishnan, T and Puppala, N and Varshney, R K and Pandey, M K (2019) Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities. In: Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, pp. 133-172.

Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067

Gangurde, S S and Xavier, A and Naik, Y D and Jha, U C and Rangari, S K and Kumar, R and Reddy, M S S and Channale, S and Elango, D and Mir, R R and Zwart, R and Laxuman, C and Sudini, H K and Pandey, M K and Punnuri, S and Mendu, V and Reddy, U K and Guo, B and Gangarao, N V P R and Sharma, V K and Wang, X and Zhao, C and Thudi, M (2022) Two decades of association mapping: Insights on disease resistance in major crops. Frontiers in Plant Science (TSI), 13. 01-22. ISSN 1664-462X

Garg, V and Barmukh, R and Chitikineni, A and Roorkiwal, M and Ojiewo, C and Bohra, A and Thudi, M and Singh, V K and Kudapa, H and Saxena, R K and Fountain, J and Mir, R R and Bharadwaj, C and Chen, X and Xin, L and Pandey, M K (2024) Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society. Plant Biotechnology Journal. pp. 1-12. ISSN 1467-7652

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Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

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Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

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Smýkal, P and Coyne, C J and Ambrose, M J and Maxted, N and Schaefer, H and Blair, M W and Berger, J and Greene, S L and Nelson, M N and Besharat, N and Vymyslický, T and Toker, C and Saxena, R K and Roorkiwal, M and Pandey, M K and Hu, J and Li, Y H and Wang, L X and Guo, Y and Qiu, L J and Redden, R J and Varshney, R K (2014) Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences, 34 (1-3). pp. 43-104. ISSN 0735-2689

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Soni, P and Gangurde, S S and Ortega-Beltran, A and Kumar, R and Parmar, S and Sudini, H K and Lei, Y and Ni, X and Huai, D and Fountain, J C and Njoroge, S and Mahuku, G and Radhakrishnan, T and Zhuang, W and Guo, B and Liao, B and Singam, P and Pandey, M K and Bandyopadhyay, R and Varshney, R K (2020) Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.). Frontiers in Microbiology (TSI), 11. pp. 1-22. ISSN 1664-302X

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Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452

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Sulieman, S and Ha, C V and Le, D T and Abdelrahman, M and Tran, C D and Watanabe, Y and Tanaka, M and Ulhassan, Z and Sheteiwy, M S and Gangurde, S S and Mochida, K and Seki, M (2024) Comparative transcriptome analysis of respiration-related genes in nodules of phosphate-deficient soybean (Glycine max cv. Williams 82). Plant Stress, 11. pp. 1-13. ISSN 2667-064X

Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652

T

Taj, M and Sajjad, M and Li, M and Yasmeen, A and Mubarik, M S and Kaniganti, S and He, C (2022) Potential Targets for CRISPR/Cas Knockdowns to Enhance Genetic Resistance Against Some Diseases in Wheat (Triticum aestivum L.). Frontiers in Genetics (TSI), 13. pp. 1-5. ISSN 1664-8021

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

U

Upadhyaya, H D and Wang, L and Prakash, C S and Liu, Y and Gao, L and Meng, R and Seetharam, K and Gowda, C L L and Ganesamurthy, K and Singh, S K and Kumar, R and Li, J and Wang, Y (2022) Genome-wide association mapping identifies an SNF4 ortholog that impacts biomass and sugar yield in sorghum and sugarcane. Journal of Experimental Botany, 73 (11). pp. 3584-3596. ISSN 1460-2431

V

Vales, M I and Sultana, R and Patil, S B and Ranga Rao, G V and Kumar, R V and Saxena, K B (2018) Honey bee mediated (Apis mellifera L.) hybrid pigeonpea seed production under net house condition. Journal of Food Legumes, 31 (4). pp. 197-204. ISSN 0970-6380

Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463

Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412

Varshney, R K and Baum, M and Guo, P and Grando, S and Ceccarelli, S and Graner, A (2010) Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Molecular Breeding, 26. pp. 229-242.

Varshney, R K and Chen, W and Li, Y and Bharti, A K and Saxena, R K and Schlueter, J A and Donoghue, M T A and Azam, S and Fan, G and Whaley, A M and Farmer, A D and Sheridan, J and Iwata, A and Tuteja, R and Penmetsa, R V and Wu, W and Upadhyaya, H D and Yang, S P and Shah, T and Saxena, K B and Michael, T and McCombie, W R and Yang, B and Zhang, G and Yang, H and Wang, J and Spillane, C and Cook, D R and May, G D and Xu, X and Jackson, S A (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30 (1). pp. 83-89. ISSN 1546-1696

Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Varshney, R K and Saxena, R K and Upadhyaya, H D and Khan, A W and Yu, Y and Kim, C and Rathore, A and Kim, D and Kim, J and An, S and Kumar, V and Anuradha, G and Yamini, K N and Zhang, W and Muniswamy, S and Kim, J S and Penmetsa, R V and von Wettberg, E and Datta, S K (2017) Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics. pp. 1-9. ISSN 1061-4036

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)

Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Vishwakarma, M K and Nayak, S N and Guo, B and Wan, L and Liao, B and Varshney, R K and Pandey, M K (2017) Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut. In: The Peanut Genome. Compendium of Plant Genomes book series (CPG) (169). Springer, pp. 93-116. ISBN 978-3-319-63933-8

W

Wan, L and Lei, Y and Yan, L and Liu, Y and Pandey, M K and Wan, X and Varshney, R K and Fang, J and Liao, B (2020) Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant. BMC Plant Biology (TSI), 20 (1). pp. 2-19. ISSN 1471-2229

Wan, L and Li, B and Pandey, M K and Wu, Y and Lei, Y and Yan, L and Dai, X and Jiang, H and Zhang, J and Wei, G and Varshney, R K and Liao, B (2016) Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science, 7 (1491). 01-15. ISSN 1664-462X

Wan, L and Wu, Y and Huang, J and Dai, X and Lei, Y and Yan, L and Jiang, H and Zhang, J and Varshney, R K and Liao, B (2014) Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional and Integrative Genomics, 14 (3). pp. 467-477. ISSN 1438-793X

Wang, H and Khera, P and Huang, B E and Yuan, M and Katam, R and Zhuang, W and Harris-Shultz, K and Moore, K M and Culbreath, A K and Zhang, X and Varshney, R K and Xie, L and Guo, B (2016) Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5). pp. 452-465. ISSN 16729072

Wang, H and Pandey, M K and Qiao, L and Qin, H and Culbreath, A K and He, G and Varshney, R K and Guo, B (2013) Genetic Mapping and QTL Analysis for Disease Resistance Using F2 and F5 Generation-based Genetic Maps Derived from Tifrunner × GT-C20 in Peanut (Arachis hypogaea L.). The Plant Genome. pp. 1-28. ISSN 1940-3372

Wang, H and Penmetsa, R V and Yuan, M and Varshney, R K and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-3. ISSN 1471-2229

Wang, H and et al, . (2012) Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 12 (10). pp. 1-25. ISSN 1471-2229

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