Items where Author is "Thudi, M"

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Number of items: 323.

Argentina

Scott, M F and Ladejobi, O and Amer, S and Bentley, A R and Biernaskie, J and Boden, S A and Clark, M and Dell’Acqua, M and Dixon, L E and Filippi, C V and Fradgley, N and Gardner, K A and Mackay, I J and O’Sullivan, D and Percival-Alwyn, L and Roorkiwal, M and Singh, R K and Thudi, M and Varshney, R K and Venturini, L and Whan, A and Cockram, J and Mott, R (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (TSI). ISSN 0018-067X

Australia

Naik, Y D and Sharma, V K and Aski, M S and Rangari, S K and Kumar, Raj and Dikshit, H K and Sangita, S and Kant, R and Mishra, G and Mir, R R and Kudapa, H and Elango, D and Zwart, R S and Varshney, R K and Thudi, M (2024) Phenotypic profiling of lentil (Lens culinaris Medikus) accessions enabled identification of promising lines for use in breeding for high yield, early flowering and desirable traits. Plant Genetic Resources: Characterization and Utilization, 22 (2). pp. 69-77. ISSN 1479-2621

Isha, I and Singh, S and Jha, U and Laxuman, C and Kudapa, H and Varshney, R K and Thudi, M (2024) Meta-QTL analysis enabled identification of candidate genes and haplotypes for enhancing biotic stress resistance in chickpea. Journal of Plant Biochemistry and Biotechnology. ISSN 0971-7811

Naik, Y D and Zhao, C and Channale, S and Nayak, S N and Bhutia, K L and Gautam, A and Kumar, R and Niranjan, V and Shah, T M and Mott, R and Punnuri, S and Pandey, M K and Wang, X and Varshney, R K and Thudi, M (2024) Bioinformatics for Plant Genetics and Breeding Research. In: Frontier Technologies for Crop Improvement. Sustainability Sciences in Asia and Africa . Springer, Singapore, pp. 35-64. ISBN 978-981-99-4673-0

Garg, V and Barmukh, R and Chitikineni, A and Roorkiwal, M and Ojiewo, C and Bohra, A and Thudi, M and Singh, V K and Kudapa, H and Saxena, R K and Fountain, J and Mir, R R and Bharadwaj, C and Chen, X and Xin, L and Pandey, M K (2024) Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society. Plant Biotechnology Journal. pp. 1-12. ISSN 1467-7652

Kumar, R and Sharma, V K and Rangari, S K and Jha, U C and Sahu, A and Paul, P J and Gupta, S and Gangurde, S S and Kudapa, H and Mir, R R and Gaur, P M and Varshney, R K and Elango, D and Thudi, M (2023) High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Cicer arietinum L.). Frontiers in Plant Science (TSI), 14. 01-09. ISSN 1664-462X

Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684

Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372

Gangurde, S S and Xavier, A and Naik, Y D and Jha, U C and Rangari, S K and Kumar, R and Reddy, M S S and Channale, S and Elango, D and Mir, R R and Zwart, R and Laxuman, C and Sudini, H K and Pandey, M K and Punnuri, S and Mendu, V and Reddy, U K and Guo, B and Gangarao, N V P R and Sharma, V K and Wang, X and Zhao, C and Thudi, M (2022) Two decades of association mapping: Insights on disease resistance in major crops. Frontiers in Plant Science (TSI), 13. 01-22. ISSN 1664-462X

Elango, D and Wang, W and Thudi, M and Sebastiar, S and Ramadoss, B R and Varshney, R K (2022) Genome-wide association mapping of seed oligosaccharides in chickpea. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Fayaz, H and Tyagi, S and Wani, A A and Pandey, R and Akhtar, S and Bhat, M A and Chitikineni, A and Varshney, R K and Thudi, M and Kumar, U and Mir, R R (2022) Genome‑wide association analysis to delineate high‑quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.). Scientific Reports, 12. 01-14. ISSN 2045-2322

Mir, A H and Bhat, M A and Fayaz, H and Wani, A A and Dar, S A and Maqbool, S and Yasin, M and Mir, J I and Khan, M A and Sofi, P A and El‑Sappah, A H and Thudi, M and Varshney, R K and Mir, R R (2022) SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas. Molecular Biology Reports, 49. pp. 11469-11479. ISSN 1573-4978

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687

Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322

Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336

Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818

Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336

Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617

Roorkiwal, M and Bharadwaj, C and Barmukh, R and Dixit, G P and Thudi, M and Gaur, P M and Chaturvedi, S K and Fikre, A and Hamwieh, A and Kumar, S and Sachdeva, S and Ojiewo, C O and Tar’an, B and Wordofa, N G and Singh, N P and Siddique, K H M and Varshney, R K (2020) Integrating genomics for chickpea improvement: achievements and opportunities. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1703-1720. ISSN 0040-5752

Gaur, P M and Samineni, S and Thudi, M and Tripathi, S and Sajja, S and Jayalakshmi, V and Mannur, D M and Vijayakumar, A G and Ganga Rao, N V P R and Ojiewo, C O and Fikre, A and Kimurto, P and Kileo, R O and Girma, N and Chaturvedi, S K and Varshney, R K and Dixit, G P and Link, W (2019) Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.). Plant Breeding (TSI). pp. 1-12. ISSN 01799541

Zwart, R S and Thudi, M and Channale, S and Manchikatla, P K and Varshney, R K and Thompson, J P (2019) Resistance to Plant-Parasitic Nematodes in Chickpea: Current Status and Future Perspectives. Frontiers in Plant Science (TSI), 10 (966). pp. 1-14. ISSN 1664-462X

Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036

Paul, P J and Samineni, S and Thudi, M and Sajja, S and Rathore, A and Das, R R and Khan, A W and Chaturvedi, S K and Lavanya, G R and Varshney, R K and Gaur, P M (2018) Molecular Mapping of QTLs for Heat Tolerance in Chickpea. International Journal of Molecular Sciences (TSI), 19(8) (2166). pp. 1-20. ISSN 1661-6596

Varshney, R K and Thudi, M and Pandey, M K and Tardieu, F and Ojiewo, C O and Vadez, V and Whitbread, A M and Siddique, K H M and Nguyen, H T and Carberry, P S and Bergvinson, D (2018) Accelerating Genetic Gains in Legumes for the Development of Prosperous Smallholder Agriculture: Integrating Genomics, Phenotyping, Systems Modelling and Agronomy. Journal of Experimental Botany (TSI), 69 (13). pp. 3293-3312. ISSN 0022-0957

Garg, T and Mallikarjuna, B P and Thudi, M and Samineni, S and Singh, S and Sandhu, J S and Kaur, L and Singh, I and Sirari, A and Basandrai, A K and Basandrai, D and Varshney, R K and Gaur, P M (2018) Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.). Euphytica (TSI), 214(3) (45). pp. 1-11. ISSN 0014-2336

Roorkiwal, M and Jain, A and Kale, S M and Doddamani, D and Chitikineni, A and Thudi, M and Varshney, R K (2017) Development and evaluation of high-density Axiom® CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea. Plant Biotechnology Journal. pp. 1-12. ISSN 14677644

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 8 (1140). pp. 1-10. ISSN 1664-462X

Thudi, M and Gaur, P M and Krishnamurthy, L and Samineni, S and Varshney, R K (2017) Enhancing drought tolerance in chickpea using genomics approaches. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Kale, S M and Jaganathan, D and Roorkiwal, M and Thudi, M and Purushothaman, R and Praveenkumar, M and Krishnamurthy, L and Kavi Kishor, P B and Gaur, P M and Varshney, R K (2017) Fine mapping studies identified a 113 kb region within “QTL-hotspot_a” for seed weight and drought related traits in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Mallikarjuna, B P and Samineni, S and Thudi, M and Sajja, S and Khan, A W and Patil, A and Viswanatha, K P and Varshney, R K and Gaur, P M (2017) Molecular mapping of flowering time genes in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Khan, A W and Thudi, M and Varshney, R K and Edwards, D (2017) Sequencing the Chickpea Genome. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 117-123. ISBN 978-3-319-66115-5

Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644

Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X

Thudi, M and Khan, A W and Kumar, V and Gaur, P M and Katta, K and Garg, V and Roorkiwal, M and Samineni, S and Varshney, R K (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biology, 16 (10). pp. 53-64. ISSN 1471-2229

Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652

Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322

Katta, M A V S K and Khan, A W and Doddamani, D and Thudi, M and Varshney, R K (2015) NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data. PLOS One, 10 (10). pp. 1-9. ISSN 1932-6203

Pushpavalli, R and Krishnamurthy, L and Thudi, M and Gaur, P M and Rao, M V and Siddique, K H M and Colmer, T D and Colmer, N C and Varshney, R K and Vadez, V (2015) Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines. BMC Plant Biology, 15 (124). pp. 1-15. ISSN 1471-2229

Roorkiwal, M and Thudi, M and Gaur, P M and Upadhyaya, H D and Singh, N P and Varshney, R K (2015) Chickpea translational genomics in the ‘whole genome’ era. Legume Perspectives (7). pp. 7-9. ISSN 2340-1559

Jaganathan, D and Thudi, M and Kale, S M and Azam, S and Roorkiwal, M and Gaur, P M and Kavi Kishor, P B and Nguyen, H and Sutton, T and Varshney, R K (2015) Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL -hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290 (2). pp. 559-571. ISSN 1617-4623

Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060

Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463

Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689

Thudi, M and Upadhyaya, H D and Rathore, A and Gaur, P M and Krishnamurthy, L and Roorkiwal, M and Nayak, S N and Chaturvedi, S K and Basu, P S and Ganga Rao, N V P R and Fikre, A and Kimurto, P and Sharma, P C and Sheshashayee, M S and Tobita, S and Kashiwagi, J and Ito, O and Killian, A and Varshney, R K (2014) Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches. PLoS ONE, 9 (5). e96758. ISSN 1932-6203

Varshney, R K and Song, C and Saxena, R K and Azam, S and Yu, S and Sharpe, A G and Cannon, S and Baek, J and Rosen, B D and Tar'an, B and Millan, T and Zhang, X and Ramsay, L D and Iwata, A and Wang, Y and Nelson, W and Farmer, A D and Gaur, P M and Soderlund, C and Penmetsa, R V and Xu, C and Bharathi, A K and He, W and Winter, P and Zhao, S and Hane, J K and Carrasquilla-Garcia, N and Condie, J A and Upadhyaya, H D and Luo, M and Thudi, M and Gowda, C L L and Singh, N P and Lichtenzveig, J and Gali, K K and Rubio, J and Nadarajan, N and Dolezel, J and Bansal, K C and Xu, X and Edwards, D. and Zhang, G and Kahl, G and Gil, J and Singh, K B and Datta, S K and Jackson, S A and Wang, J and Cook, D R (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31. pp. 240-246. ISSN 1546-1696

Vadez, V and Krishnamurthy, L and Thudi, M and Anuradha, C and Colmer, T D and Turner, N C and Siddique, K H M and Gaur, P M and Varshney, R K (2012) Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Molecular Breeding, 30 (1). pp. 9-21. ISSN 1572-9788

Austria

Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156

Brazil

Shirasawa, K and Bertioli, D J and Varshney, R K and Moretzsohn, M C and Leal-Bertioli, S C M and Thudi, M and Pandey, M K and Rami, Jean-François and Foncéka, D and Gowda, M V C and Qin, H and Guo, B and Hong, Y and Liang, X and Hirakawa, H and Tabata, S and Isobe, S (2013) Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research, 20 (2). pp. 173-184. ISSN 1756-1663

Burkina Faso

Ojiewo, C O and Monyo, E and Desmae, H and Boukar, O and Mukankusi-Mugisha, C and Thudi, M and Pandey, M K and Saxena, R K and Gaur, P M and Chaturvedi, S K and Fikre, A and Ganga Rao, N V P R and Sameer Kumar, C V and Okori, P and Janila, P and Rubyogo, J C and Godfree, C and Akpo, E and Omoigui, L and Nkalubo, S and Fenta, B and Binagwa, P and Kilango, M and Williams, M and Mponda, O and Okello, D and Chichaybelu, M and Miningou, A and Bationo, J and Sako, D and Diallo, S and Echekwu, C and Umar, M L and Oteng-Frimpong, R and Mohammed, H and Varshney, R K and Ordon, F (2019) Genomics, genetics and breeding of tropical legumes for better livelihoods of smallholder farmers. Plant Breeding (TSI). pp. 1-13. ISSN 01799541

Gemenet, D C and Leiser, W L and Zangre, R G and Angarawai, I I and Sanogo, M D and Sy, O and Thudi, M and Hash, C T and Haussmann, B I G (2015) Association analysis of low-phosphorus tolerance in West African pearl millet using DArT markers. Molecular Breeding, 35 (171). ISSN 1380-3743

Cameroon

Kosgei, A J and Kimurto, P K and Gaur, P M and Yeboah, M A and Offei, S K and Danquah, E Y and Muriuki, R W and Thudi, M and Varshney, R K (2017) Introgression of drought tolerance traits into adapted Kenyan chickpea varieties using marker assisted backcrossing (MABC). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Canada

Varshney, R K and Mir, R R and Bhatia, S and Thudi, M and Hu, Yukin and Azam, S and Zang, Y and Jaganathan, D and You, F M and Gao, J and Riera-Lizarazu, O and Luo, M (2014) Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Functional & Integrative Genomics, 14 (1). pp. 59-73. ISSN 1438-7948

Sabbavarapu, M M and Sharma, M and Chamarthi, S K and Swapna, N and Rathore, A and Thudi, M and Gaur, P M and Pande, S and Singh, S and Kaur, L and Varshney, R K (2013) Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 193 (1). pp. 121-133. ISSN 1573-5060

China

Paudel, D and Kannan, B and Yang, X and Harris-Shultz, K and Thudi, M and Varshney, R K and Altpeter, F and Wang, J (2018) Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach). Scientific Reports (TSI), 8 (1) (14419). pp. 1-11. ISSN 2045-2322

Burgarella, C and Cubry, P and Kane, N A and Varshney, R K and Mariac, C and Liu, X and Shi, C and Thudi, M and Couderc, M and Xu, X and Chitikineni, A and Scarcelli, N and Barnaud, A and Rhoné, B and Dupuy, C and François, O and Berthouly-Salazar, C and Vigouroux, Y (2018) A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. pp. 1-7. ISSN 2397-334X

Thudi, M and Chitikineni, A and Liu, X and He, W and Roorkiwal, M and Yang, W and Jian, J and Doddamani, D and Gaur, P M and Rathore, A and Samineni, S and Saxena, R K and Xu, D and Singh, N P and Chaturvedi, S K and Zhang, G and Wang, J and Datta, S K and Xu, X and Varshney, R K (2016) Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports, 6 (38636). pp. 1-10. ISSN 2045-2322

Denmark

Egypt

Ethiopia

Gaur, P M and Varshney, R K and Upadhyaya, H D and Vadez, V and Sharma, K K and Bhatnagar-Mathur, P and Sameer Kumar, C V and Janila, P and Srinivasan, S and Sajja, S and Sharma, S and Thudi, M and Roorkiwal, M and Saxena, R K and Pandey, M K and Ranga Rao, G V and Sharma, M and Sudini, H and Gopalakrishnan, S and Ganga Rao, N V P R and Fikre, A and Ojiewo, C O and Shewayrga, H and Motagi, B N and Okori, P (2018) Advances in Food Legumes Research at ICRISAT. Ethiopian Journal of Crop Science, 6 (3). pp. 1-47. ISSN 2072-8506

Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408

France

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology (TSI), 18(1) (29). pp. 1-18. ISSN 1471-2229

Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X

Georgia

Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647

Germany

Thudi, M and Bohra, A and Nayak, S N and Varghese, N and Shah, T M and Penmetsa, R V and Thirunavukkarasu, N and Gudipati, S and Gaur, P M and Kulwal, P L and Upadhyaya, H D and Kavi Kishor, P B and Winter, P and Kahl, G and Town, C D and Kilian, A and Cook, D R and Varshney, R K (2011) Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.). PLoS ONE, 6 (11). pp. 1-12. ISSN 1932-6203

Varshney, R K and Thudi, M and Aggarwal, R K and Borner, A (2007) Genic molecular markers in plants: Development and applications. In: Genomics-Assisted Crop Improvement. Springer Netherlands, Dordrecht, The Netherlands, pp. 13-29. ISBN 978-1-4020-6294-0

Ghana

Hong Kong

India

Elango, D and Wang, W and Francis, N and Chatterjee, D and Murithi, A and Chandra, V and Parthasarathi, T and David, E M and Jayaraman, V and Govindarajan, K and Gogoi, B and Punnuri, S and Thudi, M and Govindaraj, M and Ashok Kumar, A and Jiao, Y and Chopra, S (2024) New Breeding Trends in Sorghum. In: Omics and Biotechnological Approaches for Product Profile-Driven Sorghum Improvement. Springer, Singapore, pp. 377-394. ISBN 978-981-97-4346-9

Kumar, A S and Singh, Satinder and Sharma, P and Singh, I and Salaria, S and Srinivasan, S and Thudi, M and Gill, B S and Singh, Sarvjeet (2024) Identifying phosphorus use efficient genotypes by evaluating a chickpea reference set across different phosphorus regimes. Plant Genetic Resources: Characterization and Utilization (TSI). pp. 1-10. ISSN 1479-2621

Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021

Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “ QTL‐hotspot ” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372

Sab, S and Lokesha, R and Mannur, D M and Somasekhar, S and Jadhav, K and Mallikarjuna, B P and Laxuman, C and Yeri, S and Valluri, V and Bajaj, P and Chitikineni, A and Vemula, A K and Rathore, A and Varshney, R K and Shankergoud, I and Thudi, M (2020) Genome-Wide SNP Discovery and Mapping QTLs for Seed Iron and Zinc Concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition (TSI), 7 (559120). pp. 1-9. ISSN 2296-861X

Jaganathan, D and Bohra, A and Thudi, M and Varshney, R K (2020) Fine mapping and gene cloning in the post-NGS era: advances and prospects. Theoretical and Applied Genetics (TSI), 133 (5). pp. 1791-1810. ISSN 0040-5752

Sharma, S and Kumar, C V S and Prasanthi, L and Rao, P J and Thi, P and Win, M M and Muniswamy, S and Panwar, R K and Arora, A and Singh, S and Rani, U and Thudi, M and Sharma, M and Nimje, C and Varshney, R K (2020) Pre-breeding for genetic enhancement of grain legumes. In: International Conference of Pulses the Climate Smart Crops: Challenges and Opportunities, February 10-12, Kanpur, India.

Sharma, S and Kumar, C V S and Rao, P J and Prasanthi, L and Singh, S and Panwar, R K and Rani, U and Arora, A and Thudi, M and Saxena, R and Sharma, M and Kholova, J and Paul, P and Varshney, R K (2020) Broadening the genetic base of grain legumes through pre-breeding using wild species. Monograph. ICRISAT.

Gaur, P M and Samineni, S and Hingane, A and Sharma, M and Jaba, J and Varshney, R K and Thudi, M and Saxena, R K and Sharma, S S and Bhatnagar, P M and Sharma, K K (2019) Breeding for resistance to diseases and insect pests in grain legumes. In: XIX International Plant Protection Congress, 10-14 November 2019, Hyderabad, Telangana, India.

Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752

Mannur, D M and Babbar, A and Thudi, M and Sabbavarapu, M M and Roorkiwal, M and Yeri, S B and Bansal, V P and Jayalakshmi, S K and Singh Yadav, S and Rathore, A and Chamarthi, S K and Mallikarjuna, B P and Gaur, P M and Varshney, R K (2019) Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.). Molecular Breeding (TSI), 39 (1). pp. 1-13. ISSN 1380-3743

Singh, S and Gupta, S K and Thudi, M and Das, R R and Anil Kumar, V and Garg, V and Varshney, R K and Rathore, A and Pahuja, S K and Yadav, D V (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet. Crop Science (TSI), 58 (6). pp. 2379-2390. ISSN 0011-183X

Mahdavi Mashaki, K and Garg, V and Ghomi, A A N and Kudapa, H and Chitikineni, A and Zaynali Nezhad, K and Yamchi, A and Soltanloo, H and Varshney, R K and Thudi, M (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE (TSI), 13 (6). pp. 1-17. ISSN 1932-6203

Choudhary, N and Bawa, V and Paliwal, R and Singh, B and Bhat, M A and Mir, J I and Gupta, M and Sofi, P A and Thudi, M and Varshney, R K and Mir, R R (2018) Gene/QTL discovery for Anthracnose in common bean (Phaseolus vulgaris L.) from North-western Himalayas. PLoS ONE, 13 (2). pp. 1-12. ISSN 1932-6203

Pratap, A and Chaturvedi, S K and Tomar, R and Rajan, N and Malviya, N and Thudi, M and Saabale, P R and Prajapati, U and Varshney, R K and Singh, N P (2017) Marker-assisted introgression of resistance to fusarium wilt race 2 in Pusa 256, an elite cultivar of desi chickpea. Molecular Genetics and Genomics. pp. 1-9. ISSN 1617-4615

Thudi, M and Saxena, R K and Pandey, M K and Varshney, R K (2017) Legume genomics: A perspective. In: Insights on Global Challenges and Opportunities for the Century Ahead. BS Publications, Hyderabad, pp. 321-326. ISBN 978‐93‐5230‐186‐7

Gaur, P M and Samineni, S and Thudi, M and Sajja, S and Chaturvedi, S K and Jayalakshmi, V and Babbar, A and Yasin, M and Mannur, D M and Vijaykumar, A G and Varshney, R K and Dixit, G P (2017) Chickpea breeding for water-limited environments. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Sivasakthi, K and Thudi, M and Tharanya, M and Kale, S M and Kholova, J and Halime, M H and Jaganathan, D and Baddam, R and Thirunalasundari, T and Gaur, P M and Varshney, R K and Vadez, V (2017) High throughput phenotyping and advanced genotyping reveals QTLs for plant vigor and water saving traits in a “QTL-hotspot”: New opportunities for enhancing drought tolerance in chickpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.

Roorkiwal, M and Jain, A and Thudi, M and Varshney, R K (2017) Advances in Chickpea Genomic Resources for Accelerating the Crop Improvement. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 53-67. ISBN 978-3-319-66115-5

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome. Compendium of Plant Genomes . Springer International Publishing. ISBN 978-3-319-66115-5

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) The Chickpea Genome: An Introduction. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 1-4. ISBN 978-3-319-66115-5

Varshney, R K and Thudi, M and Muehlbauer, F J (2017) Future Prospects for Chickpea Research. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 135-142. ISBN 978-3-319-66115-5

Samineni, S and Thudi, M and Sajja, S and Varshney, R K and Gaur, P M (2017) Impact of Genomics on Chickpea Breeding. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 125-134. ISBN 978-3-319-66115-5

Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.

Thudi, M and Varshney, R K (2017) Requirement of Whole-Genome Sequencing and Background History of the National and International Genome Initiatives. In: The Chickpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 107-115. ISBN 978-3-319-66115-5

Samineni, S and Kamatam, S and Thudi, M and Varshney, R K and Gaur, P M (2016) Vernalization response in chickpea is controlled by a major QTL. Euphytica, 207 (2). pp. 453-461. ISSN 0014-2336

Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372

Saxena, R K and Thudi, M and Varshney, R K (2016) Genomics, trait mapping and molecular breeding in pigeonpea and chickpea. Indian Journal of Genetics and Plant Breeding, 76 (4). pp. 504-511. ISSN 0019-5200

Samineni, S and Varshney, R K and Sajja, S and Thudi, M and Jayalakshmi, V and Vijayakumar, A and Mannur, D M (2015) High yielding and drought tolerant genotypes developed through marker-assisted back crossing (MBAC) in chickpea. In: International Plant Breeding Congress (IPBC) and Eucarpia – Oil And Protein Crops Section Conference, November 01 - 05, 2015, WOW Kremlin Palace Hotel, Antalya, Turkey.

Jadhav, A A and Rayate, S J and Mhase, L B and Thudi, M and Chitikineni, A and Harer, P N and Jadhav, A S and Varshney, R K and Kulwal, P L (2015) Marker-trait association study for protein content in chickpea (Cicer arietinum L.). Journal of Genetics. ISSN 0973-7731

Purushothaman, R and Thudi, M and Krishnamurthy, L and Upadhyaya, H D and Kashiwagi, J and Gowda, C L L and Varshney, R K (2015) Association of mid-reproductive stage canopy temperature depression with the molecular markers and grain yields of chickpea (Cicer arietinum L.) germplasm under terminal drought. Field Crops Research, 174. pp. 1-11. ISSN 0378-4290

Varshney, R K and Thudi, M and Upadhyaya, H D and Dwivedi, S and Udupa, S and Furman, B and Baum, M and Hoisington, D (2014) A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.). Plant Genetic Resources, 12 (S1). S118-S120. ISSN 1479-2621

Gaur, P M and Thudi, M and Samineni, S and Varshney, R K (2014) Advances in Chickpea Genomics. In: Legumes in the Omic Era. Springer, New York, pp. 73-94. ISBN 978-1-4614-8370-0

Sharma, M and Nagavardhini, A and Thudi, M and Ghosh, R and Pande, S and Varshney, R K (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (454). pp. 1-14. ISSN 1471-2164

Varshney, R K and Thudi, M and Nayak, S N and Gaur, P M and Kashiwagi, J and Krishnamurthy, L and Jaganathan, D and Koppolu, J and Bohra, A and Tripathi, S and Rathore, A and Jukanti, A K and Jayalakshmi, V and Anil Kumar, V and Singh, S J and Yasin, Md and Sheshshayee, M S and Viswanatha, K P (2014) Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127 (2). pp. 445-462. ISSN 0040-5752

Kulwal, P L and Thudi, M and Varshney, R K (2013) Crop breeding for sustainable agriculture, genomics interventions in. In: Sustainable Food Production. Springer, New York, pp. 501-513. ISBN 978-1-4614-5796-1

Rajkumar, - and Fakurdin, B and Kavil, S P and Girma, Y and Arun, S S and Dadakhalandar, D and Gurusiddesh, B H and Patil, A and Thudi, M and Bhairappanavar, S B and Narayana, Y D and Krishnaraj, P U and Khadi, B M and Kamatar, M Y (2013) Molecular mapping of genomic regions harbouring QTLs for root and yield traits in sorghum (Sorghum bicolor L. Moench). Physiology and Molecular Biology of Plants . pp. 1-11. ISSN 0974-0430

Roorkiwal, M and Sawargaonkar, S L and Chitikineni, A and Thudi, M and Saxena, R K and Upadhyaya, H D and Vales, M I and Riera-Lizarazu, O and Varshney, R K (2013) Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform. The Plant Genome, 6 (2). pp. 1-10. ISSN 1940-3372

Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138

Mir, R R and Thudi, M and Chamarthi, S K and Krishnamurthy, L and Gaur, P M and Varshney, R K (2012) Translational Root Genomics for Crop Improvement. In: Root Genomics and Soil Interactions. John Wiley & Sons, Inc., USA, pp. 249-264. ISBN 9781118447093

Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.

Kulwal, P and Thudi, M and Varshney, R K (2011) Genomics Interventions in Crop Breeding for Sustainable Agriculture. In: Encyclopedia of Sustainability Science and Technology. Springer. ISBN 978-0-387-89469-0 (In Press)

Thudi, M and Fakrudin, B (2011) Identification of unique alleles and assessment of genetic diversity of rabi sorghum accessions using simple sequence repeat markers. Journal of Plant Biochemistry and Biotechnology, 20 (1). pp. 74-83. ISSN 0971-7811

Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.

Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.

Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336

Varshney, R K and Pande, S and Kannan, S and Thudi, M and Sharma, M and Gaur, P M and Hoisington, D A (2009) Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of Ascochyta blight in chickpea (Cicer arietinum L.). Mycological Progress. pp. 1-11.

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2009) High level of natural variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding, 128 (5). pp. 486-494.

Varshney, R K and Thudi, M and Aruna, R and Nigam, S N and Neelima, K and Vadez, V and Hoisington, D A (2008) Extraordinary high allelic diversity in a groundnut (Arachis hypogaea L.) germplasm collection assayed by robust and informative SSR markers. In: Third International Conference of the Peanut Research Community On Advances in Arachis through Genomics and Biotechnology (AAGB – 2008), 4-8 November 2008, ICRISAT, Hyderabad, Andhra Pradesh, India.

Iran

Italy

Japan

Jordan

Kenya

Korea

Malawi

Mali

Mexico

Morocco

Moroco

Myanmar

New Mexico

Niger

Nigeria

Russia

Senegal

Serbia

South Korea

Spain

Tanzania

The Netherlands

UAE

UK

USA