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Badri, J and Lakshmidevi, G and JaiVidhya, L R K and Prasad, M S and Laha, G S and Lakshmi, V J and Isetty, S R and Padmashree, R and Balakrishnan, D and Varanasi, V V P and Jukanti, A K and Singh, U M and Singh, V K and Kumar, A and Ram, T and Rao, L V S and Sundaram, R M (2022) Multiparent-Derived, Marker-Assisted Introgression Lines of the Elite Indian Rice Cultivar, ‘Krishna Hamsa’ Show Resistance against Bacterial Blight and Blast and Tolerance to Drought. Plants (TSI), 11 (5). pp. 1-21. ISSN 2223-7747
Basava, R K (2012) Development and exploitation of a set of contiguous segmental substitution lines in pearl millet [Pennisetum glaucum (L.) R. Br.]. PHD thesis, Osmania University.
Basu, U and Sharma, A and Bajaj, D and Malik, N and Jha, U C and Upadhyaya, H D and Parida, S K (2021) The DNA Replication, Repair, and Recombination Pathway Genes Modulating Yield and Stress Tolerance Traits in Chickpea. Plant Molecular Biology Reporter, 40. pp. 119-135. ISSN 1572-9818
Bhatnagar-Mathur, P and Rao, J S and Vadez, V and Dumbala, S R and Rathore, A and Yamaguchi-Shinozaki, K and Sharma, K K (2014) Transgenic peanut overexpressing the DREB1A transcription factor has higher yields under drought stress. Molecular Breeding, 33 (2). pp. 327-340. ISSN 1572-9788
Bhatnagar-Mathur, P and Vadez, V and Devi, M J and Lavanya, M and Vani, G and Sharma, K K (2009) Genetic engineering of chickpea (Cicer arietinum L.) with the P5CSF129A gene for osmoregulation with implications on drought tolerance. Molecular Breeding, 23 (4). pp. 591-606. ISSN 1572-9788
Bhatnagar-Mathur, P and Yogendra, K and Parankusam, S and Sanivarapu, H and Prasad, K and Lingampali, S B and Sharma, K K (2021) Comparative proteomics provide insights on the basis of resistance to Aspergillus flavus infection and aflatoxin production in peanut (Arachis hypogea L.). Journal of Plant Interactions, 16 (1). pp. 494-509. ISSN 1742-9145
Bhatnagar-Panwar, M and Bhatnagar-Mathur, P and Bhaaskarla, V V and Dumbala, S R and Sharma, K K (2015) Rapid, accurate and routine HPLC method for large-scale screening of pro-vitamin A carotenoids in oilseeds. Journal of Plant Biochemistry and Biotechnology, 24 (1). pp. 84-92. ISSN 0974-1275
Bohra, A and Mallikarjuna, N and Saxena, K B and Upadhyaya, H D and Vales, I and Varshney, R K (2010) Harnessing the Potential of Crop Wild Relatives through Genomics Tools for Pigeonpea Improvement. Journal of Plant Biology, 37 (1). pp. 83-98.
Bomireddy, D and Sharma, V and Senthil, R and Reddisekhar, M and Shah, P and Singh, K and Reddy, D M and Sudhakar, P and Reddy, B V B and Pandey, M K (2024) Identification of Donors for Fresh Seed Dormancy and Marker Validation in a Diverse Groundnut Mini-Core Collection. Agronomy (TSI), 14 (1). pp. 1-11. ISSN 2073-4395
Dhillon, M K and Pampapathy, G and Wadaskar, R M and Sharma, H C (2012) Impact of Bt transgenic cottons and insecticides on target and non-target insect pests, natural enemies and seedcotton yield in India. Indian Journal of Agricultural Sciences, 82 (3). pp. 248-254. ISSN 0019-5022
Dhillon, M K and Sharma, H C (2009) Effects of Bacillus thuringiensis -endotoxins Cry1Ab and Cry1Ac on the coccinellid beetle, Cheilomenes sexmaculatus (Coleoptera, Coccinellidae) under direct and indirect exposure conditions. Biocontrol Science and Technology, 19 (4). pp. 407-420. ISSN 0958-3157
Dhillon, M K and Sharma, H C (2007) Survival and development of Campoletis chlorideae on various insect and crop hosts: implications for Bt-transgenic crops. Journal of Applied Entomology, 131 (3). pp. 179-185.
Dhillon, M K and Sharma, H C (2009) Temperature influences the performance and effectiveness of field and laboratory strains of the ichneumonid parasitoid, Campoletis chlorideae. BioControl, 54. pp. 743-750.
Dutta, S and Kumawat, G and Singh, B P and Gupta, D K and Singh, Sangeeta and Dogra, V and Gaikwad, K and Sharma, T R and Raje, R S and Bandhopadhya, T K and Datta, S and Singh, M N and Bashasab, F and Kulwal, P and Wanjari, K B and Varshney, R K and Cook, D R and Singh, N K (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biology, 11 (1). pp. 17-29. ISSN 14712229
Gnanesh, B N and Bohra, A and Sharma, M and Byregowda, M and Pandey, S and Wesley, V and Saxena, R K and Saxena, K B and Kavi Kishor, P B and Varshney, R K (2011) Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crops Research, 123. pp. 53-61.
Gnanesh, B N and Ganapathy, K N and Ajay, B C and Byregowda, M (2011) Inheritance of sterility mosaic disease resistance to Bangalore and Patancheru isolates in pigeonpea (Cajanus cajan (L.) Millsp.). Electronic Journal of Plant Breeding, 2 (2). pp. 218-223.
Gopalakrishnan, S and Humayun, P and Vadlamudi, S and Vijayabharathi, R and Bhimineni, R K and Rupela, Om (2012) Plant growth-promoting traits of Streptomyces with biocontrol potential isolated from herbal vermicompost. Biocontrol Science and Technology, 22 (10). pp. 1199-1210. ISSN 1360-0478
Gujaria, N and Kumar, Ashish and Dauthal, P and Dubey, A and Hiremath, P and Bhanu Prakash, A and Farmer, A and Bhide, M and Shah, T and Gaur, P M and Upadhyaya, H D and Bhatia, S and Cook, D R and May, G D and Varshney, R K (2011) Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). TAG Theoretical and Applied Genetics, 122. pp. 1577-1589. ISSN 1432-2242
Gupta, P K and Balyan, H S and Varshney, R K (2010) Quantitative genetics and plant genomics: an overview. Molecular Breeding, 26 (2). pp. 133-134.
Gupta, Suresh Kumar and Sharma, S and Santisree, P and Kilambi, H V and Appenroth, K and Sreelakshmi, Y and Sharma, R (2013) Complex and shifting interactions of phytochromes regulate fruit development in tomato. Plant, Cell & Environment. pp. 1-57. ISSN 1365-3040
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Jayanand, B and Sudarsanam, G and Sharma, K K (2003) An efficient protocol for the regeneration of whole plants of chickpea (Cicer arietinum L.) by using axillary meristem explants derived from in vitro-germinated seedlings. In Vitro Cellular & Developmental Biology. Plant, 39 (2). pp. 171-179. ISSN 1054-5476
Joshi, Pushpesh and Soni, P and Sharma, V and Manohar, S S and Kumar, Sampath and Sharma, Shailendra and Pasupuleti, J and Vadez, V and Varshney, R K and Pandey, M K and Puppala, N (2024) Genome-Wide Mapping of Quantitative Trait Loci for Yield-Attributing Traits of Peanut. Genes (TSI), 15. pp. 1-21. ISSN 2073-4425
Khedikar, Y P and Gowda, M V C and Sarvamangala, C and Patgar, K V and Upadhyaya, H D and Varshney, R K (2011) A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut Arachis hypogaea L.). TAG Theoretical and Applied Genetics, 121 (5). pp. 971-984.
Khera, P and Pandey, M K and Varshney, R K (2013) Pest and diseases: Old and new threats - Modern breeding tools to tailor new crop cultivars. Secheresse, 24. pp. 261-273. ISSN 1147-7806
Kujur, A and Bajaj, D and Saxena, M S and Tripathi, S and Upadhyaya, H D and Gowda, C L L and Singh, Sube and Jain, M and Tyagi, A K and Parida, S K (2013) Functionally Relevant Microsatellite Markers From Chickpea Transcription Factor Genes for Efficient Genotyping Applications and Trait Association Mapping. DNA Research, 20 (4). pp. 355-374. ISSN 1756-1663
Kujur, A and Bajaj, D and Saxena, M S and Tripathi, S and Upadhyaya, H D and Gowda, C L L and Singh, Sube and Tyagi, A K and Jain, M and Parida, S K (2014) An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea. Molecular Breeding, 34 (1). pp. 241-265. ISSN 1572-9788
Kulwal, P and Thudi, M and Varshney, R K (2011) Genomics Interventions in Crop Breeding for Sustainable Agriculture. In: Encyclopedia of Sustainability Science and Technology. Springer. ISBN 978-0-387-89469-0 (In Press)
Kumar, S and Malik, J and Thakur, P and Kaistha, S and Sharma, K D and Upadhyaya, H D (2011) Growth and metabolic responses of contrasting chickpea (Cicer arietinum L.) genotypes to chilling stress at reproductive phase. Acta Physiologiae Plantarum, 33 (3). pp. 779-787.
Kumar, S and Sharma, R and Kumar, V and Vyas, G K and Rathore, A (2013) Combining molecular-marker and chemical analysis of Capparis deciduas (Capparaceae) in the Thar Desert of Western Rajasthan (India). Revista de biologia tropical : the international journal of tropical biology and conservation, 61 (1). pp. 311-320. ISSN 0034-7744
Lincy, S V and Chandrasekar, A and Narayan, M S and Sharma, R and Thakur, R P (2011) Natural occurrence of trichothecene-producing Fusaria isolated from India with particular reference to sorghum. World Journal of Microbiology and Biotechnology, 27 (4). pp. 981-989. ISSN 1573-0972
Mir, R R and Saxena, R K and Saxena, K B and Upadhyaya, H D and Kilian, A and Cook, D R and Varshney, R K (2013) Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding, 132 (5). pp. 472-478. ISSN 1439-0523
Pandey, M K and Guo, B and Holbrook, C C and Janila, P and Zhang, X and Bertioli, D J and Isobe, S and Liang, S and Varshney, R K (2014) Molecular Markers, Genetic Maps, and QTLs for Molecular Breeding in Peanut. In: Genetics, Genomics and Breeding of Peanuts. Genetics, Genomics and Breeding of Crop Plants . CRC Press, pp. 79-113. ISBN 978-1-4822-3835-8 ; 978-1-4822-3837-2
Rajkumar, - and Fakurdin, B and Kavil, S P and Girma, Y and Arun, S S and Dadakhalandar, D and Gurusiddesh, B H and Patil, A and Thudi, M and Bhairappanavar, S B and Narayana, Y D and Krishnaraj, P U and Khadi, B M and Kamatar, M Y (2013) Molecular mapping of genomic regions harbouring QTLs for root and yield traits in sorghum (Sorghum bicolor L. Moench). Physiology and Molecular Biology of Plants . pp. 1-11. ISSN 0974-0430
Raju, N L and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biology, 10 (45).
Reddy, D S and Bhatnagar-Mathur, P and Cindhuri, K S and Sharma, K K (2013) Evaluation and Validation of Reference Genes for Normalization of Quantitative Real-Time PCR Based Gene Expression Studies in Peanut. PLoS ONE, 8 (10). pp. 1-14. ISSN 1932-6203
Reddy, Y C (2001) Studies on Bacillus thuringiensis proteases involved in the production of insecticidal toxins from protoxins. PHD thesis, Osmania University.
Romeis, J and Sharma, H C and Sharma, K K and Das, S and Sarmah, B K (2004) The potential of transgenic chickpeas for pest control and possible effects on non-target arthropods. Crop Protection, 23 (10). pp. 923-938.
Roorkiwal, M and Nayak, S N and Thudi, M and Upadhyaya, H D and Brunel, D and Mournet, P and This, D and Sharma, P C and Varshney, R K (2014) Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Frontiers in Plant Science, 5 (248). pp. 1-11. ISSN 1664-462X
Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395
Sachdeva, S and Singh, R and Maurya, A and Singh, V K and Singh, U M and Kumar, A and Singh, G P (2024) Multi-model genome-wide association studies for appearance quality in rice. Frontiers in Plant Science (TSI), 14. 01-16. ISSN 1664-462X
Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021
Sarvamangala, C and Gowda, M V C and Varshney, R K (2011) Identification of quantitative trait loci for protein content, oil content and oil quality for groundnut (Arachis hypogaea L.). Field Crops Research, 122 (1). pp. 49-59.
Saxena, R K and Edwards, D and Varshney, R K (2014) Structural variations in plant genomes. Briefings in Functional Genomics. pp. 1-12. ISSN 2041-2649
Sharma, M and Nagavardhini, A and Thudi, M and Ghosh, R and Pande, S and Varshney, R K (2014) Development of DArT markers and assessment of diversity in Fusarium oxysporum f. sp. ciceris, wilt pathogen of chickpea (Cicer arietinum L.). BMC Genomics, 15 (454). pp. 1-14. ISSN 1471-2164
Singh, A and Mahato, A K and Maurya, A and Rajkumar, S and Singh, A K and Bhardwaj, R and Kaushik, S K and Kumar, S and Gupta, V and Singh, K and Singh, R (2023) Amaranth Genomic Resource Database: an integrated database resource of Amaranth genes and genomics. Frontiers in Plant Science (TSI), 14. 01-13. ISSN 1664-462X
Singh, Akshay and Maurya, A and Rajkumar, S and Singh, A K and Bhardwaj, R and Kaushik, S K and Kumar, Sandeep and Singh, K and Singh, G P and Singh, R (2024) Genome-Wide Comparative Analysis of Five Amaranthaceae Species Reveals a Large Amount of Repeat Content. Plants (TSI), 13 (6). pp. 1-26. ISSN 2223-7747
Srinivasa Rao, P and Kumar, P S and Sonti, R V (2013) Excised radicle tips as a source of genomic DNA for PCR-based genotyping and melting curve analysis in cotton. Journal of Biosciences, 38 (1). pp. 167-172. ISSN 0250-5991
Sujay, V and Gowda, M V C and Pandey, M K and Bhat, R S and Khedikar, Y P and Nadaf, H L and Gautami, B and Sarvamangala, C and Lingaraju, S and Radhakrishan, T and Knapp, S J and Varshney, R K (2012) Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.). Molecular Breeding, 30 (2). pp. 773-788. ISSN 1572-9788
Supriya, A and Senthilvel, S and Nepolean, T and Eshwar, K E and Rajaram, V and Shaw, R and Hash, C T and Kilian, A and Yadav, R C and Narasu, M L (2011) Development of a molecular linkage map of pearl millet integrating DArT and SSR markers. TAG Theoretical and Applied Genetics, 123 (2). pp. 239-250. ISSN 00405752
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Thudi, M and Li, Y and Jackson, S A and May, G D and Varshney, R K (2012) Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics, 11 (1). pp. 3-11. ISSN 2041-2647
Thudi, M and Manthena, R and Wani, S P and Tatikonda, L and Hoisington, D A and Varshney, R K (2010) Analysis of Genetic Diversity in Pongamia [Pongamia pinnata (L)Pierrre] using AFLP Markers. Journal of Plant Biochemistry and Biotechnlogy, 19 (2). pp. 209-216.
Thudi, M and Senthilvel, S and Bottley, A and Hash, C T and Reddy, A R and Feltus, A F and Paterson, A H and Hoisington, D A and Varshney, R K (2010) A comparative assessment of the utility of PCR-based marker systems in pearl millet. Euphytica, 174 (2). pp. 253-260. ISSN 0014-2336
Upadhyaya, H D and Thudi, M and Dronavalli, N and Gujaria, N and Singh, Sube and Sharma, S and Varshney, R K (2011) Genomic tools and germplasm diversity for chickpea improvement. Plant Genetic Resources : Characterization and Utilization, 9 (1). pp. 45-58.
Vadez, V (2014) Root hydraulics: The forgotten side of roots in drought adaptation. Field Crops Research, 165 (1). pp. 15-24. ISSN 0378-4290
Varshney, R K and Hoisington, D A and Tyagi, A K (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology, 24 (11). pp. 490-499.
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Varshney, R K and Murali Mohan, S and Gaur, P M and Ganga Rao, N V P R and Pandey, M K and Bohra, A and Sawargaonkar, S L and Gorantla, A and Kimurto, P.K. and Janila, P and Saxena, K B and Fikre, A and Sharma, M and Rathore, A and Pratap, A and Tripathi, S and Datta, S and Chaturvedi, S K and Mallikarjuna, N and Anuradha, G and Babber, A and Choudhary, A K and Mhase, M B and Bharadwaj, C and Mannur, D M and Harer, P N and Guo, B and Liang, X and Nadarajan, N and Gowda, C L L (2013) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances, 31 (8). pp. 1120-1134. ISSN 0734-9750
Varshney, R K and Nayak, S N and May, G D and Jackson, S A (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology, 27 (9). pp. 522-530.
Varshney, R K and Pazhamala, L T and Kashiwagi, J and Gaur, P M and Krishnamurthy, L and Hoisington, D A (2011) Genomics and Physiological Approaches for Root Trait Breeding to Improve Drought Tolerance in Chickpea (Cicer arietinum L.). In: Root Genomics. Springer, Germany, pp. 233-250. ISBN 9783540855453
Varshney, R K and Terauchi, R and McCouch, S R (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biology, 12 (6). pp. 1-8. ISSN 1544-9173
Varshney, R K and Thudi, M and May, G D and Jackson, S A (2010) Legume Genomics and Breeding. Plant Breeding Reviews, 33. pp. 257-304.
Venkateshwarlu, Ch and Kole, P C and Paul, P J and Singh, A K and Singh, V K and Kumar, A (2022) Capturing Genetic Variability and Identification of Promising Drought-Tolerant Lines in Exotic Landrace Derived Population Under Reproductive Drought Stress in Rice. Frontiers in Plant Science (TSI), 13. pp. 1-12. ISSN 1664-462X
Yadav, A K and Singh, C K and Kalia, R K and Mittal, S and Wankhede, D P and Kakani, R K and Ujjainwal, S and Aakash, . and Saroha, A and Nathawat, N S and Rani, R and Panchariya, P and Choudhary, M and Solanki, K and Chaturvedi, K K and Archak, S and Singh, K and Singh, G P and Singh, A K (2023) Genetic diversity, population structure, and genome‑wide association study for the flowering trait in a diverse panel of 428 moth bean (Vigna aconitifolia) accessions using genotyping by sequencing. BMC Plant Biology (TSI), 23. pp. 1-17. ISSN 1471-2229
Yadav, R and Kalia, S and Rangan, P and Pradheep, K and Rao, G P and Kaur, V and Pandey, R and Rai, V and Vasimalla, C C and Langyan, S and Sharma, S and Thangavel, B and Rana, V S and Vishwakarma, H and Shah, A and Saxena, A and Kumar, A and Singh, K and Siddique, K H M (2022) Current Research Trends and Prospects for Yield and Quality Improvement in Sesame, an Important Oilseed Crop. Frontiers in Plant Science (TSI), 13. pp. 1-22. ISSN 1664-462X
Zaman-Allah, M and Jenkinson, D M and Vadez, V (2011) A conservative pattern of water use, rather than deep or profuse rooting, is critical for the terminal drought tolerance of chickpea. Journal of Experimental Botany, 62 (12). pp. 4239-4252. ISSN 0022-0957