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Sachdeva, S and Singh, R and Maurya, A and Singh, V K and Singh, U M and Kumar, A and Singh, G P (2024) New insights into QTNs and potential candidate genes governing rice yield via a multi-model genome-wide association study. BMC Plant Biology (TSI), 24. pp. 1-18. ISSN 1471-2229
Singh, Preeti and Sundaram, K T and Vinukonda, V P and Venkateshwarlu, Ch and Paul, P J and Pahi, B and Gurjar, A and Singh, U M and Kalia, S and Kumar, A and Singh, V K and Sinha, P (2024) Superior haplotypes of key drought-responsive genes reveal opportunities for the development of climate-resilient rice varieties. Communications Biology, 7. pp. 1-11. ISSN 2399-3642
Garg, V and Barmukh, R and Chitikineni, A and Roorkiwal, M and Ojiewo, C and Bohra, A and Thudi, M and Singh, V K and Kudapa, H and Saxena, R K and Fountain, J and Mir, R R and Bharadwaj, C and Chen, X and Xin, L and Pandey, M K (2024) Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society. Plant Biotechnology Journal. pp. 1-12. ISSN 1467-7652
Sachdeva, S and Singh, R and Maurya, A and Singh, V K and Singh, U M and Kumar, A and Singh, G P (2024) Multi-model genome-wide association studies for appearance quality in rice. Frontiers in Plant Science (TSI), 14. 01-16. ISSN 1664-462X
Srinivas, K and Singh, V K and Srinivas, B and Sameriya, K K and Prasad, L and Singh, G P (2023) Determining the impact of stripe rust and leaf rust on grain yield and yield components' losses in Indian wheat cultivars. Cereal Research Communications, 13. pp. 1-14. ISSN 1788-9170
Varanasi, Y V P and Isetty, S R and Revadi, P and Balakrishnan, D and Hajira, S and Prasad, M S and Laha, G S and Perraju, P and Singh, U M and Singh, V K and Kumar, A and Sundaram, R M and Badri, J (2023) Molecular and Morphological Characterization of Introgression Lines with Resistance to Bacterial Leaf Blight and Blast in Rice. Plants (TSI), 12 (16). pp. 1-19. ISSN 2223-7747
Srinivas, K and Singh, V K and Srinivas, B and Sameriya, K K and Kumar, U and Gangwar, O P and Kumar, S and Prasad, L and Singh, G P (2023) Documentation of multi‑pathotype durable resistance in exotic wheat genotypes to deadly stripe and leaf rust diseases. Cereal Research Communications. pp. 1-13. ISSN 1788-9170
Tyagi, S and Kabade, P G and Gnanapragasam, N and Singh, U M and Gurjar, A K S and Rai, A and Sinha, P and Kumar, A and Singh, V K (2023) Codon Usage Provide Insights into the Adaptation of Rice Genes under Stress Condition. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-18. ISSN 1422-0067
Badri, J and Lakshmidevi, G and JaiVidhya, L R K and Prasad, M S and Laha, G S and Lakshmi, V J and Isetty, S R and Padmashree, R and Balakrishnan, D and Varanasi, V V P and Jukanti, A K and Singh, U M and Singh, V K and Kumar, A and Ram, T and Rao, L V S and Sundaram, R M (2022) Multiparent-Derived, Marker-Assisted Introgression Lines of the Elite Indian Rice Cultivar, ‘Krishna Hamsa’ Show Resistance against Bacterial Blight and Blast and Tolerance to Drought. Plants (TSI), 11 (5). pp. 1-21. ISSN 2223-7747
Venkateshwarlu, Ch and Kole, P C and Paul, P J and Singh, A K and Singh, V K and Kumar, A (2022) Capturing Genetic Variability and Identification of Promising Drought-Tolerant Lines in Exotic Landrace Derived Population Under Reproductive Drought Stress in Rice. Frontiers in Plant Science (TSI), 13. pp. 1-12. ISSN 1664-462X
Sandhu, N and Singh, J and Singh, G and Sethi, M and Singh, M P and Pruthi, G and Raigar, O P and Kaur, R and Kaur, R and Sarao, P S and Lore, J S and Singh, U M and Dixit, S and Sagare, D B and Singh, S P and Satturu, V and Singh, V K and Kumar, A (2022) Development and validation of a novel core set of KASP markers for the traits improving grain yield and adaptability of rice under direct-seeded cultivation conditions. Genomics, 114. pp. 1-18. ISSN 0888-7543
Singh, U M and Dixit, S and Alam, S and Yadav, S and Prasanth, V V and Singh, A K and Venkateshwarlu, Ch and Abbai, R and Vipparla, A K and Badri, J and Ram, T and Prasad, M S and Laha, G S and Singh, V K and Kumar, S (2021) Marker-assisted forward breeding to develop a drought-, bacterial-leaf-blight-, and blast-resistant rice cultivar. The Plant Genome (TSI), 15 (1). pp. 1-17. ISSN 1940-3372
Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687
Sinha, P and Singh, V K and Bohra, A and Kumar, A and Reif, J C and Varshney, R K (2021) Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theoretical and Applied Genetics (TSI), 134 (6). pp. 1829-1843. ISSN 0040-5752
Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617
Sinha, P and Singh, V K and Saxena, R K and Khan, A W and Abbai, R and Chitikineni, A and Desai, A and Molla, J and Upadhyaya, H D and Kumar, A and Varshney, R K (2020) Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea ( Cajanus cajan L.). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644
Varshney, R K and Sinha, P and Singh, V K and Kumar, A and Zhang, Q and Bennetzen, J L (2020) 5Gs for crop genetic improvement. Current Opinion in Plant Biology (TSI), 56. pp. 190-196. ISSN 1369-5266
Sinha, P and Singh, V K and Saxena, R K and Kale, S M and Li, Y and Garg, V and Meifang, T and Khan, A W and Kim, K D and Chitikineni, A and Saxena, K B and Sameer Kumar, C V and Liu, X and Xu, X and Jackson, S and Powell, W and Nevo, E and Searle, I R and Lodha, M and Varshney, R K (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal (TSI). ISSN 1467-7644
Gupta, S K and Sudarshan Patil, K and Rathore, A and Yadav, D V and Sharma, L D and Mungra, K D and Patil, H T and Gupta, S K and Kumar, R and Chaudhary, V and Das, R R and Anil Kumar, V and Singh, V K and Srivastava, R K and Gupta, R and Boratkar, M and Varshney, R K and Rai, K N and Yadav, O P (2020) Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. Theoretical and Applied Genetics (TSI). ISSN 0040-5752
Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, C V S and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs. Scientific Reports (TSI), 10 (1). pp. 1-17. ISSN 2045-2322
Sandhu, N and Subedi, S R and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems. Scientific Reports (TSI), 9 (1) (9334). pp. 1-16. ISSN 2045-2322
Subedi, S R and Sandhu, N and Singh, V K and Sinha, P and Kumar, S and Singh, S P and Ghimire, S K and Pandey, M and Yadaw, R B and Varshney, R K and Kumar, A (2019) Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition. BMC Genomics (TSI), 20(1) (471). pp. 1-20. ISSN 1471-2164
Varshney, R K and Pandey, M K and Bohra, A and Singh, V K and Thudi, M and Saxena, R K (2019) Toward the sequence-based breeding in legumes in the post-genome sequencing era. Theoretical and Applied Genetics (TSI), 132 (3). pp. 797-816. ISSN 0040-5752
Obala, J and Saxena, R K and Singh, V K and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2019) Development of sequence-based markers for seed protein content in pigeonpea. Molecular Genetics and Genomics (TSI), 294 (1). pp. 57-68. ISSN 1617-4615
Yadav, S and Sandhu, N and Majumder, R R and Dixit, S and Kumar, S and Singh, S P and Mandal, N P and Das, S P and Yadaw, R B and Singh, V K and Sinha, P and Varshney, R K and Kumar, A (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Scientific Reports (TSI), 9 (1) (2616). pp. 1-13. ISSN 2045-2322
Abbai, R and Singh, V K and Nachimuthu, V V and Sinha, P and Selvaraj, R and Vipparla, A K and Singh, A K and Singh, U M and Varshney, R K and Kumar, A (2019) Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains. Plant Biotechnology Journal (TSI), 17 (8). pp. 1612-1622. ISSN 14677644
Saxena, R K and Rathore, A and Bohra, A and Yadav, P and Das, R R and Khan, A W and Singh, V K and Chitikineni, A and Singh, I P and Sameer Kumar, C V and Varshney, R K (2018) Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. The Plant Genome (TSI), 11 (3). pp. 1-10. ISSN 1940-3372
Varshney, R K and Singh, V K and Kumar, A and Powell, W and Sorrells, M E (2018) Can genomics deliver climate-change ready crops? Current Opinion in Plant Biology (TSI), 45 (B). pp. 205-211. ISSN 1369-5266
Priyadarshi, R and Arremsetty, H P S and Singh, A K and Khandekar, D and Ulaganathan, K and Shenoy, V and Sinha, P and Singh, V K (2018) Marker-Assisted Improvement of the Elite Maintainer Line of Rice, IR 58025B for Wide Compatibility (S5n) Gene. Frontiers in Plant Science (TSI), 9 (1051). pp. 1-9. ISSN 1664-462X
Obala, J and Saxena, R K and Singh, V K and Vechalapu, S and Das, R R and Rathore, A and Sameer Kumar, C V and Saxena, K B and Tongoona, P and Sibiya, J and Varshney, R K (2018) Genetic variation and relationships of total seed protein content with some agronomic traits in pigeonpea (Cajanus cajan (L.) Millsp.). Australian journal of crop science, 12 (12). pp. 1859-1865. ISSN 1835-2707
Saxena, R K and Singh, V K and Kale, S M and Tathineni, R and Parupalli, S and Kumar, V and Garg, V and Das, R R and Sharma, M and Yamini, K N and Muniswamy, S and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Kishor, P B K and Varshney, R K (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Scientific Reports, 7 (1911). pp. 1-11. ISSN 2045-2322
Saxena, R K and Kale, S M and Kumar, V and Parupalli, S and Joshi, S and Singh, V K and Garg, V and Das, R R and Sharma, M and Yamini, K N and Ghanta, A and Rathore, A and Sameer Kumar, C V and Saxena, K B and Varshney, R K (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Scientific Reports, 7 (1813). pp. 1-10. ISSN 2045-2322
Pandey, M K and Khan, A W and Singh, V K and Vishwakarma, M K and Shasidhar, Y and Kumar, V and Garg, V and Bhat, R S and Chitikineni, A and Janila, P and Guo, B and Varshney, R K (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644
Parupalli, S and Saxena, R K and Sameer Kumar, C V and Sharma, M and Singh, V K and Vechalapu, S and Kavi Kishor, P B and Saxena, K B and Varshney, R K (2017) Genetics of fusarium wilt resistance in pigeonpea as revealed by phenotyping of RILs. Journal of Food Legumes, 30 (4). pp. 241-244. ISSN 0970-6380
Singh, V K and Khan, A W and Saxena, R K and Sinha, P and Kale, S M and Parupalli, S and Kumar, V and Chitikineni, A and Vechalapu, S and Sameer Kumar, C V and Sharma, M and Ghanta, A and Yamini, K N and Muniswamy, S and Varshney, R K (2017) Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnology Journal. pp. 1-9. ISSN 1467-7644
Smýkal, P and Varshney, R K and Singh, V K and Coyne, C J and Domoney, C and Kejnovský, E and Warkentin, T (2016) From Mendel’s discovery on pea to today’s plant genetics and breeding. Theoretical and Applied Genetics, 129 (12). pp. 2267-2280. ISSN 0040-5752
Varshney, R K and Gaur, P M and Chamarthi, S K and Krishnamurthy, L and Tripathi, S and Kashiwagi, J and Samineni, S and Singh, V K and Thudi, M and Jaganathan, D (2016) Fast-track introgression of “QTL-hotspot” for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). The Plant Genome, 6 (3). pp. 1-9. ISSN 1940-3372
Singh, V K and Khan, A W and Jaganathan, D and Thudi, M and Roorkiwal, M and Takagi, H and Garg, V and Kumar, V and Chitikineni, A and Gaur, P M and Sutton, T and Terauchi, R and Varshney, R K (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnology Journal. pp. 2110-2119. ISSN 1467-7644
Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X
Sinha, P and Pazhamala, L T and Singh, V K and Saxena, R K and Krishnamurthy, L and Azam, S and Khan, A W and Varshney, R K (2016) Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.). Frontiers in Plant Science, 06 (1065). 01-10. ISSN 1664-462X
Ellur, R K and Khanna, A and Yadav, A and Pathania, S and Rajashekara, H and Singh, V K and Gopala Krishnan, S and Bhowmick, P K and Nagarajan, M and Vinod, K K and Prakash, G and Mondal, K K and Singh, N K and Vinod Prabhu, K and Singh, A K (2016) Improvement of Basmati rice varieties for resistance to blast and bacterial blight diseases using marker assisted backcross breeding. Plant Science, 242. pp. 330-341. ISSN 0168-9452
Singh, V K and Khan, A W and Saxena, R K and Kumar, V and Kale, S M and Sinha, P and Chitikineni, A and Pazhamala, L T and Garg, V and Sharma, M and Sameer Kumar, C V and Parupalli, S and Vechalapu, S and Patil, S and Muniswamy, S and Ghanta, A and Yamini, K N and Dharmaraj, P S and Varshney, R K (2016) Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnology Journal, 14. pp. 1183-1194. ISSN 1467-7644
Sinha, P and Saxena, R K and Singh, V K and Krishnamurthy, L and Varshney, R K (2015) Selection and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) under Heat and Salt Stress Conditions. Frontiers in Plant Science, 6 (1071). 01-10. ISSN 1664-462X
Varshney, R K and Singh, V K and Hickey, J M and Xun, X and Marshall, D F and Wang, J and Edwards, D and Ribaut, J M (2015) Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. 01-10. ISSN 1360-1385 (In Press)
Sinha, P and Saxena, K B and Saxena, R K and Singh, V K and Suryanarayana, V and Sameer Kumar, C V and Katta, M A V S and Khan, A W and Varshney, R K (2015) Association of Gene with Cytoplasmic Male Sterility in Pigeonpea. The Plant Genome, 8 (2). pp. 1-12. ISSN 1940-3372
Sinha, P and Singh, V K and Suryanarayana, V and Krishnamurthy, L and Saxena, R K and Varshney, R K (2015) Evaluation and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) Under Drought Stress Conditions. PLOS One, 10 (4). pp. 1-15. ISSN 1932-6203
Pazhamala, L T and Saxena, R K and Singh, V K and Sameer Kumar, C V and Kumar, V and Sinha, P and Patel, K and Obala, J and Kaoneka, S R and Tongoona, P and Shimelis, H A and Ganga Rao, N V P R and Odeny, D A and Rathore, A and Dharmaraj, P S and Yamini, K N and Varshney, R K (2015) Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan). Frontiers in Plant Science, 6 (50). 01-12. ISSN 1664-462X
Agarwal, G and Sabbavarapu, M M and Singh, V K and Thudi, M and Sheelamary, S and Gaur, P M and Varshney, R K (2015) Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.). Euphytica. pp. 1-14. ISSN 1573-5060
Huang, B E and Verbyla, K L and Verbyla, A P and Raghavan, C and Singh, V K and Gaur, P M and Leung, H and Varshney, R K and Cavanagh, C R (2015) MAGIC populations in crops: current status and future prospects. Theoretical and Applied Genetics, 128 (6). pp. 999-1017. ISSN 0040-5752
Varshney, R K and Mohan, S M and Gaur, P M and Chamarthi, S K and Singh, V K and Samineni, S and Swapna, N and Sharma, M and Singh, S and Kaur, L and Pande, S (2014) Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea. The Plant Genome, 7. pp. 1-11. ISSN 1940-3372
Sinha, P and Tomar, S M S and Vinod, . and Singh, V K and Balyan , H S (2013) Genetic analysis and molecular mapping of a new fertility restorer gene Rf8 for Triticum timopheevi cytoplasm in wheat (Triticum aestivum L.) using SSR markers. Genetica. pp. 1-11. ISSN 1573-6857
Rathore, A and Singh, V K and Pandey, S K and Rao, C S and Thakur, V and Pandey, M K and Anil Kumar, V and Das, R R (2018) Current Status and Future Prospects of Next-Generation Data Management and Analytical Decision Support Tools for Enhancing Genetic Gains in Crops. In: Advances in Biochemical Engineering/Biotechnology. Advances in Biochemical Engineering/Biotechnology book series . Springer, Berlin, Heidelberg, pp. 1-16.
Singh, V K and Saxena, R K and Varshney, R K (2017) Sequencing Pigeonpea Genome. In: The Pigeonpea Genome. Compendium of Plant Genomes book series (CPG) . Springer, pp. 93-97. ISBN 978-3-319-63795-2
Rao, A N and Dixit, S and Gajanan, S and Anantha, K H and Singh, V K (2019) Effective and economic ecological weed management approaches for managing weeds in rice in the era of climate change. In: XIX International Plant Protection Congress, 10-14 November 2019, Hyderabad, India.
Sinha, P and Saxena, R K and Singh, V K and Khan, A W and Upadhyaya, H D and Desai, A and Sameer Kumar, C V and Varshney, R K (2017) Haplotype for drought responsive genes in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.
Kaoneka, S R and Saxena, R K and Singh, V K and Sameer Kumar, C V and Shimelis, H A and Varshney, R K (2017) Identification of genomic regions associated with the yield and related traits in pigeonpea (Cajanus cajan L. Millsp.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.
Obala, J and Saxena, R K and Singh, V K and Kale, S M and Garg, V and Kumar, V and Sameer Kumar, C V and Tongoona, P and Sibiya, J and Saxena, K B and Varshney, R K (2017) Molecular mapping of seed protein content in pigeonpea – a drought tolerant crop of the semi-arid tropics. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.