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Garg, V and Barmukh, R and Chitikineni, A and Roorkiwal, M and Ojiewo, C and Bohra, A and Thudi, M and Singh, V K and Kudapa, H and Saxena, R K and Fountain, J and Mir, R R and Bharadwaj, C and Chen, X and Xin, L and Pandey, M K (2024) Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society. Plant Biotechnology Journal. pp. 1-12. ISSN 1467-7652
Kumar, R and Sharma, V K and Rangari, S K and Jha, U C and Sahu, A and Paul, P J and Gupta, S and Gangurde, S S and Kudapa, H and Mir, R R and Gaur, P M and Varshney, R K and Elango, D and Thudi, M (2023) High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Cicer arietinum L.). Frontiers in Plant Science (TSI), 14. 01-09. ISSN 1664-462X
Joshi, D C and Sood, S and Kudapa, H and Zhou, M and Santra, D (2023) Editorial: Trait mining and genetic enhancement of millets and potential crops: modern prospects for ancient grains. Frontiers in Plant Science (TSI), 14. 01-03. ISSN 1664-462X
Kudapa, H and Ghatak, A and Barmukh, R and Chaturvedi, P and Khan, A and Kale, S and Fragner, L and Chitikineni, A and Weckwerth, W and Varshney, R K (2023) Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). The Plant Genome (TSI), SE. pp. 1-17. ISSN 1940-3372
Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372
Kudapa, H and Barmukh, R and Vemuri, H and Gorthy, S and Pinnamaneni, R and Vetriventhan, M and Srivastava, R K and Joshi, P and Habyarimana, E and Gupta, S K and Govindaraj, M (2023) Genetic and genomic interventions in crop biofortification: Examples in millets. Frontiers in Plant Science (TSI), 14. pp. 1-15. ISSN 1664-462X
Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067
Mir, R R and Kudapa, H and Pramod, S and Lewis, R S (2022) Editorial: Biotechnological and genomic approaches for enhancing agronomic performance of crops. Frontiers in Genetics (TSI), 13. 01-08. ISSN 1664-8021
Babele, P K and Kudapa, H and Singh, Y and Varshney, R K and Kumar, A (2022) Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X
Srungarapu, R and Mahendrakar, M D and Mohammad, L A and Chand, U and Jagarlamudi, V R and Kondamudi, K P and Kudapa, H and Samineni, S (2022) Genome-Wide Association Analysis Reveals Trait-Linked Markers for Grain Nutrient and Agronomic Traits in Diverse Set of Chickpea Germplasm. Cells (TSI), 11(15) (2457). pp. 1-21. ISSN 2073-4409
Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652
Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687
Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X
Raza, A and Tabassum, J and Kudapa, H and Varshney, R K (2021) Can omics deliver temperature resilient ready-to-grow crops? Critical Reviews in Biotechnology (TSI). pp. 1-24. ISSN 0738-8551
Singh, S and Kudapa, H and Garg, V and Varshney, R K (2021) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops. BMC Genomics (TSI), 22 (1). pp. 1-23. ISSN 1471-2164
Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372
Pujar, M and Gangaprasad, S and Govindaraj, M and Gangurde, S S and Kanatti, A and Kudapa, H (2020) Genome-wide association study uncovers genomic regions associated with grain iron, zinc and protein content in pearl millet. Scientific Reports (TSI), 10 (1). ISSN 2045-2322
Palit, P and Kudapa, H and Zougmore, R and Kholova, J and Whitbread, A M and Sharma, M and Varshney, R K (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22. pp. 1-12. ISSN 2214-6628
Palit, P and Ghosh, R and Tolani, P and Tarafdar, A and Chitikineni, A and Bajaj, P and Sharma, M and Kudapa, H and Varshney, R K (2020) Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations. Plant and Cell Physiology (TSI), 61 (8). pp. 1449-1463. ISSN 1471-9053
Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644
Mahdavi Mashaki, K and Garg, V and Ghomi, A A N and Kudapa, H and Chitikineni, A and Zaynali Nezhad, K and Yamchi, A and Soltanloo, H and Varshney, R K and Thudi, M (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE (TSI), 13 (6). pp. 1-17. ISSN 1932-6203
Kaashyap, M and Ford, R and Kudapa, H and Jain, M and Edwards, D and Varshney, R K and Mantri, N (2018) Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea. Scientific Reports (TSI), 8 (1) (4855). pp. 1-19. ISSN 2045-2322
Kudapa, H and Garg, V and Chitikineni, A and Varshney, R K (2018) The RNA-Seq based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development. Plant, Cell & Environment (TSI). pp. 1-17. ISSN 0140-7791
Garg, V and Agarwal, G and Pazhamala, L T and Nayak, S N and Kudapa, H and Khan, A W and Doddamani, D and Sharma, M and Kavi Kishor, P B and Varshney, R K (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Frontiers in Plant Science, 8 (488). pp. 1-16. ISSN 1664-462X
Thudi, M and Roorkiwal, M and Kudapa, H and Chaturvedi, S K and Singh, N P and Varshney, R K (2017) An Overview Of Chickpea Research: From Discovery To Delivery. Pulse India, 2 (5). pp. 22-25.
Pandey, M K and Roorkiwal, M and Singh, V K and Ramalingam, A and Kudapa, H and Thudi, M and Chitikineni, A and Rathore, A and Varshney, R K (2016) Emerging genomic tools for legume breeding: current status and future prospects. Frontiers in Plant Science, 07 (455). 01-18. ISSN 1664-462X
Agarwal, G and Garg, V and Kudapa, H and Doddamani, D and Pazhamala, L T and Khan, A W and Thudi, M and Lee, S H and Varshney, R K (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant Biotechnology Journal, 14 (07). pp. 1563-1577. ISSN 1467-7652
Garg, R and Shankar, R and Thakkar, B and Kudapa, H and Krishnamurthy, L and Mantri, N and Varshney, R K and Bhatia, S and Jain, M (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports, 6 (19228). 01-15. ISSN 2045-2322
Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382
Ramalingam, A and Kudapa, H and Pazhamala, L T and Garg, V and Varshney, R K (2015) Gene Expression and Yeast Two-Hybrid Studies of 1R-MYB Transcription Factor Mediating Drought Stress Response in Chickpea (Cicer arietinum L.). Frontiers in Plant Science, 6 (1117). 01-10. ISSN 1664-462X
Ramalingam, A and Kudapa, H and Pazhamala, L T and Weckwerth, W and Varshney, R K (2015) Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. Frontiers in Plant Science, 6 (1116). 01-21. ISSN 1664-462X
Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322
Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Broad-Spectrum Streptomyces sp. for Plant Growth Promotion Traits in Chickpea (Cicer arietinum L.). Philippine Agricultural Scientist, 98 (3). pp. 270-278. ISSN 0031-7454
Ali, L and Azam, S and Rubio, J and Kudapa, H and Madrid, E and Varshney, R K and Castro, P and Chen, W and Gil, J and Millan, T (2015) Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses. Euphytica, 204 (2). pp. 473-485. ISSN 0014-2336
Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Varshney, R K (2015) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Organic Agriculture, 5 (2). pp. 123-133. ISSN 1879-4238
Srivastava, S and Zheng, Y and Kudapa, H and Jagadeeswaran, G and Hivrale, V and Varshney, R K and Sunkar, R (2015) High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science, 235. pp. 46-57. ISSN 0168-9452
Varshney, R K and Kudapa, H and Pazhamala, L T and Chitikineni, A and Thudi, M and Bohra, A and Gaur, P M and Janila, P and Fikre, A and Kimurto, P and Ellis, N (2015) Translational Genomics in Agriculture: Some Examples in Grain Legumes. Critical Reviews in Plant Sciences, 34 (1-3). pp. 169-194. ISSN 0735-2689
Gopalakrishnan, S and Srinivas, V and Alekhya, G and Prakash, B and Kudapa, H and Rathore, A and Varshney, R K (2015) The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. SpringerPlus, 4 (31). pp. 1-10. ISSN 2193-1801
Mir, R R and Kudapa, H and Srikanth, S and Saxena, R K and Sharma, A and Azam, S and Saxena, K B and Penmetsa, R V and Varshney, R K (2014) Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.). Theoretical and Applied Genetics, 127 (12). pp. 2663-2678. ISSN 0040-5752
Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203
Gopalakrishnan, S and Srinivas, V and Prakash, B and Arumugam, S and Vijayabharathi, R and Rupela, O and Kudapa, H and Krishnamohan, K and Varshney, R K (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169. pp. 40-48. ISSN 0944-5013
Afonso-Grunz, F and Molina, C and Hoffmeier, K and Rycak, L and Kudapa, H and Varshney, R K and Drevon, J-J and Winter, P and Kahl, G (2014) Genome-based analysis of the transcriptome from mature chickpea root nodules. Frontiers in Plant Science. ISSN 1664-462X
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408
Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867
Sama, V S A K and Kudapa, H and Bhaskar Naik, S and Sundaram, R M and Viraktamath, B C and Bentur, J S (2012) Mapping and marker-assisted breeding of a gene allelic to the major Asian rice gall midge resistance gene Gm8. Euphytica, 187 (3). pp. 393-400. ISSN 0014-2336
Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Joshi, P and Gupta, S K and Ojulong, H and Sharma, R and Vetriventhan, M and Kudapa, H and Choudhary, S and Naresh, D and Kholova, J and Sajja, S (2023) Finger Millet Improvement in Post-genomic Era: Hundred Years of Breeding and Moving Forward. In: Smart Plant Breeding for Field Crops in Post-genomics Era. Springer Nature Singapore Pte Ltd., Singapore, pp. 221-253. ISBN 978-981-19-8218-7
Kudapa, H and Agarwal, G and Chitikineni, A and Gaur, P M and Krishnamurthy, L and Varshney, R K (2017) Mining for heat stress responsive genes by RNA-Seq based comprehensive gene expression analyses in chickpea (Cicer arietinum L.). In: InterDrought-V, February 21-25, 2017, Hyderabad, India.
Kudapa, H and Sharma, H C and Krishnamurthy, L and Adivi, S and Vijaya, P and Farmer, A D and Shah, T and Gaur, P M and Varshney, R K (2012) Deciphering the role of stress responsive genes in chickpea (Cicer arietinum L.). In: Proceedings of VI International Conference on Legumes Genetics and Genomics, 2-7 October 2012, Hyderabad, India.