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Pazhamala, L T and Agarwal, G and Bajaj, P and Kumar, V and Kulshreshtha, A and Saxena, R K and Varshney, R K (2016) Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLOS ONE, 11 (10). 01-17. ISSN 1932-6203
Fountain, J C and Bajaj, P and Pandey, M K and Nayak, S N and Yang, L and Kumar, V and Jayale, A S and Chitikineni, A and Zhuang, W and Scully, B T and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production. Scientific Reports, 6 (38747). pp. 1-12. ISSN 2045-2322
Fountain, J C and Bajaj, P and Nayak, S N and Yang, L and Pandey, M K and Kumar, V and Jayale, A S and Chitikineni, A and Lee, R D and Kemerait, R C and Varshney, R K and Guo, B (2016) Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology, 7 (2048). pp. 1-16. ISSN 1664-302X
Nayak, S N and Agarwal, G and Pandey, M K and Sudini, H and Jayale, A S and Purohit, S and Bajaj, P and Desai, A and Wan, L and Guo, B and Liao, B and Varshney, R K (2017) Insights on host-pathogen interaction between groundnut (Arachis hypogaea) and Aspergillus flavus. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.
Pazhamala, L T and Saxena, R K and Purohit, S and Bajaj, P and Kumar, V and Garg, V and Srikanth, S and Hingane, A J and Kulshreshtha, A and Krishnamurthy, L and Sameer Kumar, C V and Verdier, J and Varshney, R K (2017) Next generation sequencing based transcriptomic studies for crop improvement in pigeonpea. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.
Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. pp. 1-13. ISSN 1087-0156
Fountain, J C and Koh, J and Yang, L and Pandey, M K and Nayak, S N and Bajaj, P and Zhuang, W J and Chen, Z Y and Kemerait, R C and Lee, R D and Chen, S and Varshney, R K and Guo, B (2018) Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports (TSI), 8 (1) (3430). pp. 1-14. ISSN 2045-2322
Varshney, R K and Thudi, M and Roorkiwal, M and He, W and Upadhyaya, H D and Yang, W and Bajaj, P and Cubry, P and Rathore, A and Jian, J and Doddamani, D and Khan, A W and Garg, V and Chitikineni, A and Xu, D and Gaur, P M and Singh, N P and Chaturvedi, S K and Gangarao, N V P R and Krishnamurthy, L and Dixit, G P and Fikre, A and Kimurto, P K and Sreeman, S M and Bharadwaj, C and Tripathi, S and Wang, J and Lee, S H and Edwards, D and Kavi Kishor, P B and Penmetsa, R V and Crossa, J and Nguyen, H T and Siddique, K H M and Colmer, T D and Sutton, T and von Wettberg, E and Vigouroux, Y and Xu, X and Liu, X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics (TSI), 51 (5). pp. 857-864. ISSN 1061-4036
Zhuang, W and Chen, H and Yang, M and Wang, J and Pandey, M K and Zhang, C and Chang, W C and Zhang, L and Zhang, X and Tang, R and Garg, V and Wang, X and Tang, H and Chow, G N and Wang, J and Deng, Y and Wang, D and Khan, A W and Yang, Q and Cai, T and Bajaj, P and Wu, K and Guo, B and Zhang, X and Li, J and Liang, F and Hu, J and Liao, B and Liu, S and Chitikineni, A and Yan, H and Zheng, Y and Shan, S and Liu, Q and Xie, D and Wang, Z and Khan, S A and Ali, N and Zhao, C and Li, X and Luo, Z and Zhang, S and Zhuang, R and Peng, Z and Wang, S and Mamadou, G and Zhuang, Y and Zhao, Z and Yu, W and Xiong, F and Quan, W and Yuan, M and Li, Y and Zou, H and Xia, H and Zha, Li and Fan, J and Yu, J and Xie, W and Yuan, J and Chen, K and Zhao, S and Chu, W and Chen, Y and Sun, P and Meng, F and Zhuo, T and Zhao, Y and Li, C and He, G and Zhao, Y and Wang, C and Kavi Kishor, P B and Pan, R L and Paterson, A H and Wang, X and Ming, R and Varshney, R K (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics (TSI), 51 (5). pp. 865-876. ISSN 1061-4036
Fountain, J C and Yang, L and Pandey, M K and Bajaj, P and Alexander, D and Chen, S and Kemerait, R C and Varshney, R K and Guo, B (2019) Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. BMC Microbiology (TSI), 19 (1). pp. 1-14. ISSN 1471-2180
Molla, K A and Karmakar, S and Molla, J and Bajaj, P and Varshney, R K and Datta, S K and Datta, K (2020) Understanding sheath blight resistance in rice: the road behind and the road ahead. Plant Biotechnology Journal (TSI), 18 (4). pp. 895-915. ISSN 1467-7644
Sinha, P and Bajaj, P and Pazhamala, L T and Nayak, S N and Pandey, M K and Chitikineni, A and Huai, D and Khan, A W and Desai, A and Jiang, H and Zhuang, W and Guo, B and Liao, B and Varshney, R K (2020) Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal (TSI). pp. 1-14. ISSN 1467-7644
Palit, P and Ghosh, R and Tolani, P and Tarafdar, A and Chitikineni, A and Bajaj, P and Sharma, M and Kudapa, H and Varshney, R K (2020) Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations. Plant and Cell Physiology (TSI), 61 (8). pp. 1449-1463. ISSN 1471-9053
Pazhamala, L T and Chaturvedi, P and Bajaj, P and Srikanth, S and Ghatak, A and Chitikineni, A and Bellaire, A and Hingane, A and Kumar, C V S and Saxena, K B and Weckwerth, W and Saxena, R K and Varshney, R K (2020) Multiomics approach unravels fertility transition in a pigeonpea line for a two‐line hybrid system. The Plant Genome (TSI), 13 (2). pp. 1-20. ISSN 1940-3372
Sab, S and Lokesha, R and Mannur, D M and Somasekhar, S and Jadhav, K and Mallikarjuna, B P and Laxuman, C and Yeri, S and Valluri, V and Bajaj, P and Chitikineni, A and Vemula, A K and Rathore, A and Varshney, R K and Shankergoud, I and Thudi, M (2020) Genome-Wide SNP Discovery and Mapping QTLs for Seed Iron and Zinc Concentrations in Chickpea (Cicer arietinum L.). Frontiers in Nutrition (TSI), 7 (559120). pp. 1-9. ISSN 2296-861X
Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X
Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X
Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762
Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322
Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687
Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203
Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X
Achola, E and Wasswa, P and Fonceka, D and Clevenger, J P and Bajaj, P and Ozias‑Akins, P and Rami, J and Deom, C M and Hoisington, D A and Edema, R and Odeny, D A and Okello, D K (2023) Genome‑wide association studies reveal novel loci for resistance to groundnut rosette disease in the African core groundnut collection. Theoretical and Applied Genetics, 136. pp. 1-20. ISSN 1432-2242
Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372
Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X
Ruperao, P and Bajaj, P and Subramani, R and Yadav, R and Lachagari, V B R and Lekkala, S P and Rathore, A and Archak, S and Angadi, U B and Singh, R and Singh, K and Mayes, S and Rangan, P (2023) A pilot-scale comparison between single and double-digest RAD markers generated using GBS strategy in sesame (Sesamum indicum L.). PLoS ONE, 18 (6). 01-19. ISSN 1932-6203
Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642
Ruperao, P and Bajaj, P and Yadav, R and Angamuthu, M and Subramani, R and Rai, V and Tiwari, K and Rathore, A and Singh, K and Singh, G P and Angadi, U B and Mayes, S and Rangan, P (2024) Double-digest restriction-associated DNA sequencing-based genotyping and its applications in sesame germplasm management. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372
Jamedar, H V R and Gandham, P and Bajaj, P and Thati, S and Rao, V S and Varshney, R K and Saxena, R K (2024) Identification of superior haplotypes for seed protein content in pigeonpea (Cajanus cajan L.). Journal of Plant Biochemistry and Biotechnology, 33. pp. 178-188. ISSN 0971-7811
Gangurde, S S and Korani, W and Bajaj, P and Wang, H and Fountain, J C and Agarwal, G and Pandey, M K and Abbas, H K and Chang, P K and Holbrook, C C and Kemerait, R C and Varshney, R K and Dutta, B and Clevenger, J P and Guo, B (2024) Aspergillus flavus pangenome (AflaPan) uncovers novel aflatoxin and secondary metabolite associated gene clusters. BMC Plant Biology (TSI), 24. pp. 1-17. ISSN 1471-2229