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Khan, A W and Garg, V and Sun, S and Gupta, Saurabh and Dudchenko, O and Roorkiwal, M and Chitikineni, A and Bayer, P E and Shi, C and Upadhyaya, H D and Bohra, A and Bharadwaj, C and Mir, R R and Baruch, K and Yang, B and Coyne, C J and Bansal, K C and Nguyen, H T and Ronen, G and Aiden, E L and Veneklaas, E and Siddique, K H M and Liu, X and Edwards, D and Varshney, R K (2024) Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature Genetics (TSI). ISSN 1061-4036
Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372
Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372
Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372
Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463
Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644
Valliyodan, B and Cannon, S B and Bayer, P E and Shu, S and Brown, A V and Ren, L and Jenkins, J and Chung, C Y L and Chan, T F and Daum, C G and Plott, C and Hastie, A and Baruch, K and Barry, K W and Huang, W and Patil, G and Varshney, R K and Hu, H and Batley, J and Yuan, Y and Song, Q and Stupar, R M and Goodstein, D M and Stacey, G and Lam, H M and Jackson, S A and Schmutz, J and Grimwood, J and Edwards, D and Nguyen, H T (2019) Construction and comparison of three reference‐quality genome assemblies for soybean. The Plant Journal (TSI), 100 (5). pp. 1066-1082. ISSN 0960-7412
Mousavi-Derazmahalleh, M and Bayer, P E and Hane, J K and Valliyodan, B and Nguyen, H T and Nelson, M N and Erskine, W and Varshney, R K and Papa, R and Edwards, D (2019) Adapting legume crops to climate change using genomic approaches. Plant, Cell & Environment (TSI), 42 (1). pp. 6-19. ISSN 01407791
Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706
Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.