Items where Division is "Center of Excellence in Genomics and Systems Biology" and Year is 2022

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Number of items: 53.

A

Akinlade, O J and Voss-Fels, K and Costilla, R and Kholova, J and Choudhary, S and Varshney, R K and Hickey, L T and Smith, M R (2022) Designing chickpea for a hotter drier world. Euphytica, 218. pp. 1-16. ISSN 1573-5060

B

Babele, P K and Kudapa, H and Singh, Y and Varshney, R K and Kumar, A (2022) Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health. Frontiers in Plant Science (TSI), 13. 01-13. ISSN 1664-462X

Barmukh, R and Roorkiwal, M and Garg, V and Khan, A W and German, L and Jaganathan, D and Chitikineni, A and Kholova, J and Kudapa, H and Samineni, S and Sivasakthi, K and Kale, S M and Gaur, P M and Sagurthi, S R and Benitez-Alfonso, Y and Varshney, R K (2022) Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea. Plant Biotechnology Journal, 20. pp. 1701-1715. ISSN 1467-7652

Bharadwaj, C and Jorben, J and Rao, A and Roorkiwal, M and Patil, B S and Jayalakshmi, - and Ahammed, S K and Saxena, D R and Yasin, M and Jahagirdar, J E and Sontakke, P L and Pithia, M S and Chudasama, M K and Swarup, I and Singh, R K and Nitesh, S D and Chitikineni, A and Singh, S and Singh, I and Pratap, A and Dixit, G P and Srivastava, A K (2022) Development of High Yielding Fusarium Wilt Resistant Cultivar by Pyramiding of “Genes” Through Marker-Assisted Backcrossing in Chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 1-10. ISSN 1664-8021

Bhat, J A and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Glycine max L.). Frontiers in Genetics (TSI), 13. 01-19. ISSN 1664-8021

Bhat, J A and Karikari, B and Adeboye, K A and Ganie, S A and Barmukh, R and Hu, D and Varshney, R K and Yu, D (2022) Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean. Theoretical and Applied Genetics, 135. pp. 2407-2422. ISSN 1432-2242

Bomireddy, D and Gangurde, S S and Variath, M T and Janila, P and Manohar, S S and Sharma, V and Parmar, S and Deshmukh, D and Reddisekhar, M and Reddy, D M and Sudhakar, P and Reddy, B V B and Varshney, R K and Guo, B and Pandey, M K (2022) Discovery of Major Quantitative Trait Loci and Candidate Genes for Fresh Seed Dormancy in Groundnut. Agronomy (TSI), 12 (2). pp. 1-18. ISSN 2073-4395

D

Ding, Y and Qiu, X and Luo, H and Huang, L and Guo, J and Yu, B and Sudini, H K and Pandey, M K and Kang, Y and Liu, N and Zhou, X and Chen, W and Chen, Y and Wang, X and Huai, D and Yan, L and Lei, Y and Jiang, H and Varshney, R K and Liu, K and Liao, B (2022) Comprehensive evaluation of Chinese peanut mini‑mini core collection and QTL mapping for aflatoxin resistance. BMC Plant Biology (TSI), 22. 01-15. ISSN 1471-2229

Doležalová, A and Sládeková, L and Šimoníková, D and Holušová, K and Karafiátová, M and Varshney, R K and Doležel, J and Hřibová, E (2022) Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting Fluorescence in situ Hybridization. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X

E

Elango, D and Rajendran, K and Laan, L V der and Sebastiar, S and Raigne, J and Thaiparambil, N A and Haddad, N E and Raja, B and Wang, W and Ferela, A and Chiteri, K O and Thudi, M and Varshney, R K and Chopra, S and Singh, A and Singh, A K (2022) Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? Frontiers in Plant Science (TSI), 13. pp. 1-16. ISSN 1664-462X

G

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16. pp. 1-19. ISSN 1940-3372

Gangurde, S S and Khan, A W and Janila, P and Variath, M T and Manohar, S S and Singam, P and Chitikineni, A and Varshney, R K and Pandey, M K (2022) Whole-genome sequencing based discovery of candidate genesand diagnostic markers for seed weight in groundnut. The Plant Genome (TSI), 16 (4). pp. 1-19. ISSN 1940-3372

Garg, V and Varshney, R K (2022) Analysis of Small RNA Sequencing Data in Plants. In: Plant Bioinformatics Methods in Molecular Biology. Methods in Molecular Biology, III (2443). Humana, New York, pp. 497-509. ISBN 978-1-0716-2067-0

H

Halder, U and Biswas, R and Kabiraj, A and Deora, R and Let, M and Roy, R Kr and Chitikineni, A and Majhi, K and Sarkar, S and Dutta, B and Laha, A and Datta, A and Khan, D and Varshney, R K and Saha, D and Chattopadhyay, S and Bandopadhyay, R (2022) Genomic, morphological, and biochemical analyses of a multi‑metal resistant but multi‑drug susceptible strain of Bordetella petrii from hospital soil. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

K

Kaashyap, M and Ford, R and Mann, A and Varshney, R K and Siddique, K H M and Mantri, N (2022) Comparative Flower Transcriptome Network Analysis Reveals DEGs Involved in Chickpea Reproductive Success during Salinity. Plants (TSI), 11 (3). pp. 1-20. ISSN 2223-7747

Kaashyap, M and Kaur, S and Ford, R and Edwards, D and Siddique, K H M and Varshney, R K and Mantri, N (2022) Comprehensive transcriptomic analysis of two RIL parents with contrasting salt responsiveness identifies polyadenylated and non-polyadenylated flower lncRNAs in chickpea. Plant Biotechnology Journal (TSI), 20 (7). pp. 1402-1416. ISSN 1467-7644

Kalema, E P and Akpo, E and Muricho, G and Ringo, J and Ojiewo, C O and Varshney, R K (2022) Mapping out market drivers of improved variety seed use: the case of sorghum in Tanzania. Heliyon (TSI), 8 (1). pp. 1-9. ISSN 2405-8440

Kamdar, J H and Jasani, M D and Chandrashekar, A B and Janila, P and Pandey, M K and Georrge, J J and Varshney, R K and Bera, S K (2022) Does improved oleic acid content due to marker-assisted introgression of ahFAD2 mutant alleles in peanuts alter its mineral and vitamin composition? Frontiers in Plant Science (TSI), 13. 01-14. ISSN 1664-462X

Kinhoegbè, G and Djèdatin, G and Saxena, R K and Chitikineni, A and Bajaj, P and Molla, J and Agbangla, C and Dansi, A and Varshney, R K (2022) Genetic diversity and population structure of pigeonpea (Cajanus cajan [L.] Millspaugh) landraces grown in Benin revealed by Genotyping-By-Sequencing. PLoS ONE (TSI), 17. pp. 1-14. ISSN 1932-6203

Kulwal, P L and Mir, R R and Varshney, R K (2022) Cytogenetics to functional genomics: six decades journey of Professor P.K. Gupta. Plant Biotechnology Journal, 20. pp. 1021-1030. ISSN 1467-7652

Kumar, S and Das, A and Hauser, M and Muricho, G and Degefu, T and Fikre, A and Ojiewo, C and Ferede, S and Varshney, R K (2022) Estimating the potential to close yield gaps through increased efficiency of chickpea production in Ethiopia. Food Security, 14. pp. 1241-1258. ISSN 1876-4525

Kushalappa, A C and Hegde, N G and Gunnaiah, R and Sathe, A and Yogendra, K N and Ajjamada, L (2022) Apoptotic‑like PCD inducing HRC gene when silenced enhances multiple disease resistance in plants. Scientific Reports (TSI), 12. 01-13. ISSN 2045-2322

Kushwah, A and Bhatia, D and Barmukh, R and Singh, I and Singh, G and Bindra, S and Vij, S and Chellapilla, B and Pratap, A and Roorkiwal, M and Kumar, S and Varshney, R K and Singh, S (2022) Genetic mapping of QTLs for drought tolerance in chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. 01-15. ISSN 1664-8021

L

Liu, H and Rao, D and Guo, T and Gangurde, S S and Hong, Y and Chen, M and Huang, Z and Jiang, Y and Xu, Z and Chen, Z (2022) Whole Genome Sequencing and Morphological Trait-Based Evaluation of UPOV Option 2 for DUS Testing in Rice. Frontiers in Genetics (TSI), 13. pp. 1-14. ISSN 1664-8021

Liu, N and Wu, B and Pandey, M K and Huang, L and Luo, H and Chen, Y and Zhou, X and Chen, W and Huai, D and Yu, B and Chen, H and Guo, J and Lei, Y and Liao, B and Varshney, R K and Jiang, H (2022) Gene expression and DNA methylation altering lead to the high oil content in wild allotetraploid peanut (A. monticola). Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

Lu, Q and Liu, H and Hong, Y and Liang, X and Li, S and Liu, H and Li, H and Wang, R and Deng, Q and Jiang, H and Varshney, R K and Pandey, M K and Chen, X (2022) Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). Frontiers in Plant Science (TSI), 13. 01-11. ISSN 1664-462X

M

Manthena, V and Jarquín, D and Varshney, R K and Roorkiwal, M and Dixit, G P and Bharadwaj, C and Howard, R (2022) Evaluating dimensionality reduction for genomic prediction. Frontiers in Genetics (TSI), 14. pp. 1-16. ISSN 1664-8021

Mir, R R and Kudapa, H and Pramod, S and Lewis, R S (2022) Editorial: Biotechnological and genomic approaches for enhancing agronomic performance of crops. Frontiers in Genetics (TSI), 13. 01-08. ISSN 1664-8021

Montesinos-López, O A and Montesinos-Lopez, A and Acosta, R and Varshney, R K and Bentley, A and Crossa, J (2022) Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding. The Plant Genome (TSI), 15 (1). pp. 1-24. ISSN 1940-3372

Movahedi, A and Wei, H and Zhou, X and Fountain, J C and Chen, Z and Mu, Z and Sun, W and Zhang, J and Li, D and Guo, B and Varshney, R K and Yang, L and Zhuge, Q (2022) Precise exogenous insertion and sequence replacements in poplar by simultaneous HDR overexpression and NHEJ suppression using CRISPR-Cas9. Horticulture Research, 9. pp. 1-15. ISSN 2052-7276

Muniswamy, S and Kumar, P and Saxena, R K and Geeta, - and Varshney, R K (2022) Stability of advanced medium duration genotypes across seasons for yield in pigeonpea [Cajanus cajan (L.) millsp.]. Indian Journal of Agricultural Research, 56 (2). pp. 129-134. ISSN 0976-058X

P

Pan, J and Zhou, X and Ahmad, N and Zhang, K and Tang, R and Zhao, H and Jiang, J and Tian, M and Li, C and Li, A and Zhang, X and He, L and Ma, J and Li, X and Tian, R and Ma, C and Pandey, M K and Varshney, R K and Wang, X and Zhao, C (2022) BSA‑seq and genetic mapping identified candidate genes for branching habit in peanut. Theoretical and Applied Genetics, 135. pp. 4457-4468. ISSN 1432-2242

Patel, J and Khandwal, D and Choudhary, B and Ardeshana, D and Jha, R K and Tanna, B and Yadav, S and Mishra, A and Varshney, R K and Siddique, K H M (2022) Differential Physio-Biochemical and Metabolic Responses of Peanut (Arachis hypogaea L.) under Multiple Abiotic Stress Conditions. International Journal of Molecular Sciences (TSI), 23 (2). pp. 1-23. ISSN 1661-6596

Patil, B and Hegde, V and Sridhara, S and Pandian, R T P and Thube, S H and Palliath, G K and Gangurde, S S and Jha, P K (2022) Multigene phylogeny and haplotype analysis reveals predominance of oomycetous fungus, Phytophthora meadii (McRae) associated with fruit rot disease of arecanut in India. Saudi Journal of Biological Sciences (TSI), 29. pp. 1-16. ISSN 1319-562X

R

Raza, A and Tabassum, J and Fakhar, A Z and Sharif, R and Chen, H and Zhang, C and Ju, L and Fotopoulos, V and Siddique, K H M and Singh, R K and Zhuang, W and Varshney, R K (2022) Smart reprograming of plants against salinity stress using modern biotechnological tools. Critical Reviews in Biotechnology, 43 (7). pp. 1-28. ISSN 0738-8551

Raza, A and Tabassum, J and Zahid, Z and Charagh, S and Bashir, S and Barmukh, R and Khan, R S A and Barbosa, F Jr and Zhang, C and Chen, H and Zhuang, W and Varshney, R K (2022) Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants. Frontiers in Plant Science (TSI), 12. pp. 1-28. ISSN 1664-462X

Rocchetti, L and Gioia, T and Logozzo, G and Brezeanu, C and Pereira, L G and Rosa, L D and Marzario, S and Pieri, A and Fernie, A R and Alseekh, S and Susek, K and Cook, D R and Varshney, R K and Agrawal, S K and Hamwieh, A and Bitocchi, E and Papa, R (2022) Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols, 2. pp. 1-16. ISSN 2691-1299

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. 01-17. ISSN 1664-462X

S

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

Saeed, F and Chaudhry, U K and Bakhsh, A and Raza, A and Saeed, Y and Bohra, A and Varshney, R K (2022) Moving Beyond DNA Sequence to Improve Plant Stress Responses. Frontiers in Genetics (TSI), 13. pp. 1-15. ISSN 1664-8021

Salehi, H and Rad, A C and Sharifan, H and Raza, A and Varshney, R K (2022) Aerially Applied Zinc Oxide Nanoparticle Affects Reproductive Components and Seed Quality in Fully Grown Bean Plants (Phaseolus vulgaris L.). Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X

Samantara, K and Bohra, A and Mohapatra, S R and Prihatini, R and Asibe, F and Singh, L and Reyes, V P and Tiwari, A and Maurya, A K and Croser, J S and Wani, S H and Siddique, K H M and Varshney, R K (2022) Breeding More Crops in Less Time: A Perspective on Speed Breeding. Biology, 11 (2). pp. 1-14. ISSN 2079-7737

Sasi, J M and Gupta, S and Singh, A and Kujur, A and Agarwal, M and Agarwal, S K (2022) Know when and how to die: gaining insights into the molecular regulation of leaf senescence. Physiology and Molecular Biology of Plants, 28. pp. 1515-1534. ISSN 0974-0430

Sclavounos, A and Roussos, P and Milla, S and Kostas, P and Samaras, Y and Pozzi, C and Chitikineni, A and Varshney, R K and Voloudakis, A (2022) Genetic diversity of fig (Ficus carica L.) germplasm from the Mediterranean basin as revealed by SSR markers. Genetic Resources and Crop Evolution, 70. pp. 1395-1406. ISSN 1573-5109

Sharma, P and Yajnik, K and Singh, Sadhana and Bhalothia, P (2022) Receptor-like kinases induced by abscisic acid in plants. In: Plant Receptor-Like Kinases. Role in Development and Stress . Academic Press is an imprint of Elsevier, United Kingdom, pp. 333-356. ISBN 978-0-323-90594-7

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Singh, V and Sinha, P and Obala, J and Khan, A W and Chitikineni, A and Saxena, R K and Varshney, R K (2022) QTL-seq for the identification of candidate genes for days to flowering and leaf shape in pigeonpea. Heredity, 128. pp. 411-419. ISSN 1365-2540

T

Tayade, A T and Motagi, B N and Jadhav, M P and Nadaf, A S and Koti, R V and Gangurde, S S and Sharma, V and Varshney, R K and Pandey, M K and Bhat, R S (2022) Genetic mapping of tolerance to iron deficiency chlorosis in peanut (Arachis hypogaea L.). Euphytica, 218. pp. 1-10. ISSN 1573-5060

W

Wani, S H and Choudhary, M and Barmukh, R and Bagaria, P K and Samantara, K and Razzaq, A and Jaba, J and Ba, M N and Varshney, R K (2022) Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops. Theoretical and Applied Genetics, 135. pp. 3875-3895. ISSN 1432-2242

X

Xiao, Y and Liu, H and Du, P and Liang, X and Li, H and Lu, Q and Li, S and Liu, H and Hong, Y and Varshney, R K and Chen, X (2022) Impact of different cooking methods on the chemical profile of high-oleic acid peanut seeds. Food Chemistry, 379. ISSN 0308-8146

Xiao, Y and Liu, H and Lu, Q and Li, H and Liu, Q and Li, S and Liu, H and Varshney, R K and Liang, X and Hong, Y and Chen, X (2022) Lipid profile variations in high olecic acid peanuts by following different cooking processes. Food Research International, 155. ISSN 0963-9969

Y

Yang, T and Liu, R and Luo, Y and Hu, S and Wang, D and Wang, C and Pandey, M K and Ge, S and Xu, Q and Li, N and Li, G and Huang, Y and Saxena, R K and Ji, Y and Li, M and Yan, X and He, Y and Liu, Y and Wang, X and Xiang, C and Varshney, R K and Ding, H and Gao, S and Zong, X (2022) Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nature Genetics, 54. pp. 1553-1563. ISSN 1546-1718

Z

Zhou, Y and Sun, M and Sun, P and Gao, H and Yang, H and Jing, Y and Hussain, M A and Saxena, R K and Carther, F I and Wang, Q and Li, H (2022) Tonoplast inositol transporters: Roles in plant abiotic stress response and crosstalk with other signals. Journal of Plant Physiology, 271. ISSN 0176-1617

This list was generated on Sat May 18 03:41:43 2024 UTC.