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Achari, S R and Mann, R C and Sharma, M and Edwards, J (2023) Diagnosis of Fusarium oxysporum f. sp. ciceris causing Fusarium wilt of chickpea using loop‑mediated isothermal amplification (LAMP) and conventional end‑point PCR. Scientific Reports (TSI), 13. pp. 1-10. ISSN 2045-2322
Baloch, F S and Altaf, M T and Liaqat, W and Bedir, M and Nadeem, M A and Cömertpay, G and Çoban, N and Habyarimana, E and Barutçular, C and Cerit, I and Ludidi, N and Karaköy, T and Aasim, M and Chung, Y S and Nawaz, M A and Hatipoğlu, R and Kökten, K and Sun, H (2023) Recent advancements in the breeding of sorghum crop: current status and future strategies for marker-assisted breeding. Frontiers in Genetics (TSI), 14. 01-36. ISSN 1664-8021
Bančič, J and Odeny, D A and Ojulong, H F and Josiah, S M and Buntjer, J and Gaynor, R C and Hoad, S P and Gorjanc, G (2023) Genomic and phenotypic characterization of finger millet indicates a complex diversification history. The Plant Genome (TSI). pp. 1-17. ISSN 1940-3372
Choudhury, D R and Kumar, R and Maurya, A and Semwal, D P and Rathi, R S and Gautam, R K and Trivedi, A K and Bishnoi, S K and Ahlawat, S P and Singh, K and Singh, N K and Singh, R (2023) SSR and SNP Marker-Based Investigation of Indian Rice Landraces in Relation to Their Genetic Diversity, Population Structure, and Geographical Isolation. Agriculture (TSI), 13 (4). pp. 1-17. ISSN 2077-0472
Choudhury, D R and Kumar, R and Maurya, A and Semwal, D P and Rathi, R S and Gautam, R K and Trivedi, A K and Bishnoi, S K and Ahlawat, S P and Singh, K and Singh, N K and Singh, R (2023) SSR and SNP Marker-Based Investigation of Indian Rice Landraces in Relation to Their Genetic Diversity, Population Structure, and Geographical Isolation. Agriculture (TSI), 13 (4). pp. 1-17. ISSN 2077-0472
Debbarma, J and Saikia, B and Singha, D L and Das, D and Keot, A J and Maharana, J and Velmurugan, N and Arunkumar, K P and Reddy, P S and Chikkaputtaiah, C (2023) CRISPR/Cas9-Mediated Mutation in XSP10 and SlSAMT Genes Impart Genetic Tolerance to Fusarium Wilt Disease of Tomato (Solanum lycopersicum L.). Genes (TSI), 14. 01-22. ISSN 2073-4425
Devos, K M and Qi, P and Bahri, B A and Gimode, D M and Jenike, K and Manthi, S J and Lule, D and Lux, T and Martinez-Bello, L and Pendergast IV, T H and Plott, C and Saha, D and Sidhu, G S and Sreedasyam, A and Wang, X and Wang, H and Wright, H and Zhao, J and Deshpande, S P and Villiers, S de and Dida, M M and Grimwood, J and Jenkins, J and Lovell, J and Mayer, K F X and Mneney, E E and Ojulong, H F and Schatz, M C and Schmutz, J and Song, B and Tesfaye, K and Odeny, D A (2023) Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nature Communications (TSI), 14. pp. 1-15. ISSN 2041-1723
Dutta, B and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Delving into the lifestyle of Sundarban Wetland resident, biofilm producing, halotolerant Salinicoccus roseus: a comparative genomics-based intervention. BMC Genomics (TSI), 24. pp. 1-15. ISSN 1471-2164
Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372
Gangurde, S S and Pasupuleti, J and Parmar, S and Variath, M T and Bomireddy, D and Manohar, S S and Varshney, R K and Singam, P and Guo, B and Pandey, M K (2023) Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut. Frontiers in Genetics (TSI), 14. 01-15. ISSN 1664-8021
Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology. ISSN 1432-2056
Halder, U and Biswas, R and Shaw, R and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Genome-based characterization of the deep-sea psychrotolerant bacterium Bacillus altitudinis SORB11 isolated from the Indian Sector of the Southern Ocean. Polar Biology, 47. pp. 115-133. ISSN 0722-4060
Haq, S and Singh, R B and Gupta, V and Mahendrakar, M D and Kothari, S L and Kachhwaha, S (2023) Metabolic pathway responsive gene encoding enzyme anchored EST–SSR markers based genetic and population assessment among Capsicum accessions. Genetic Resources and Crop Evolution, 70. pp. 1767-1783. ISSN 1573-5109
Huai, D and Wu, J and Xue, X and Hu, M and Zhi, C and Pandey, M K and Liu, N and Huang, L and Bai, D and Yan, L and Chen, Y and Wang, X and Kang, Y and Wang, Z and Jiang, H and Lei, Y and Varshney, R K and Liao, B (2023) Red fluorescence protein (DsRed2) promotes the screening efficiency in peanut genetic transformation. Frontiers in Plant Science (TSI), 14. 01-11. ISSN 1664-462X
Izhar, T and Chakraborty, M and Prasad, Y and Ali, N and Kumar, R and Gupta, S K (2023) Production and genetic characterization of interspecific hybrids between pearl millet Pennisetum glaucum (L.) × Napier grass Pennisetum purpureum (K.). The Pharma Innovation (TSI), 12 (6). pp. 1789-1792. ISSN 2349-8242
Jan, S and Kumar, S and Yousuf, M and Shafi, S and Majid, R and Khan, M A and Jeelani, F and Shikari, A B and Kaur, S and Kumar, S and Kalia, S and Singh, K and Prasad, M and Varshney, R K and Mir, R R (2023) Do diverse wheat genotypes unleash their biochemical arsenal differentially to conquer cold stress? A comprehensive study in the Western Himalayas. Physiologia Plantarum, 176 (1). ISSN 1399-3054
Jan, S and Rustgi, S and Barmukh, R and Shikari, A B and Leske, B and Bekuma, A and Sharma, D and Ma, W and Kumar, U and Kumar, U and Bohra, A and Varshney, R K and Mir, R R (2023) Advances and opportunities in unraveling cold-tolerance mechanisms in the world’s primary staple food crops. The Plant Genome. pp. 1-23. ISSN 1940-3372
Joshi, D C and Sood, S and Kudapa, H and Zhou, M and Santra, D (2023) Editorial: Trait mining and genetic enhancement of millets and potential crops: modern prospects for ancient grains. Frontiers in Plant Science (TSI), 14. 01-03. ISSN 1664-462X
Kaur, K and Neelam, K and Singh, J and Malik, P and Singh, K (2023) Uncovering natural allelic and structural variants of OsCENH3 gene by targeted resequencing and in silico mining in genus Oryza. Scientific Reports (TSI), 13. pp. 1-14. ISSN 2045-2322
Kor, S D and Chowdhury, N and Keot, A K and Yogendra, K and Chikkaputtaiah, C and Reddy, P S (2023) RNA Pol III promoters—key players in precisely targeted plant genome editing. Frontiers in Genetics (TSI), 13. 01-13. ISSN 1664-8021
Kudapa, H and Barmukh, R and Vemuri, H and Gorthy, S and Pinnamaneni, R and Vetriventhan, M and Srivastava, R K and Joshi, P and Habyarimana, E and Gupta, S K and Govindaraj, M (2023) Genetic and genomic interventions in crop biofortification: Examples in millets. Frontiers in Plant Science (TSI), 14. pp. 1-15. ISSN 1664-462X
Kumar, M and Prusty, M R and Pandey, M K and Singh, P K and Bohra, A and Guo, B and Varshney, R K (2023) Application of CRISPR/Cas9-mediated gene editing for abiotic stress management in crop plants. Frontiers in Plant Science (TSI), 14. 01-22. ISSN 1664-462X
Kumar, R and Sharma, V K and Rangari, S K and Jha, U C and Sahu, A and Paul, P J and Gupta, S and Gangurde, S S and Kudapa, H and Mir, R R and Gaur, P M and Varshney, R K and Elango, D and Thudi, M (2023) High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Cicer arietinum L.). Frontiers in Plant Science (TSI), 14. 01-09. ISSN 1664-462X
Let, M and Majhi, K and Halder, U and De, A and Saha, D and Chitikineni, A and Roychowdhury, T and Varshney, R K and Bandopadhyay, R (2023) Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization. Journal of Environmental Chemical Engineering, 11 (3). ISSN 2213-3437
Magar, N D and Shah, P and Barbadikar, K M and Bosamia, T C and Madhav, M S and Mangrauthia, S K and Pandey, M K and Sharma, Shailendra and Shanker, A K and Neeraja, C N and Sundaram, R M (2023) Long non-coding RNA-mediated epigenetic response for abiotic stress tolerance in plants. Plant Physiology and Biochemistry, 206. pp. 1-21. ISSN 0981-9428
Majhi, K and Let, M and Halder, U and Chitikineni, A and Varshney, R K and Bandopadhyay, R (2023) Copper removal capability and genomic insight into the lifestyle of copper mine inhabiting Micrococcus yunnanensis GKSM13. Environmental Research (TSI), 223. ISSN 0013-9351
Mallikarjuna, M G and Pandey, M K and Sharma, R and Clevenger, J and Bhattacharya, S (2023) Editorial: Application of network-theoretic approaches in biology. Frontiers in Genetics (TSI), 14. 01-03. ISSN 1664-8021
Mammadova, R and Amri, A and Akparov, Z and Alo, F Y and Sheikhzamanova, F and Abbasov, M and Amrahov, N and Hajiyev, E and Alizade, S (2023) Evaluation of genetic diversity using SSR markers and link with drought response of Azerbaijani durum wheat (Triticum durum Desf.) genotypes. Genetic Resources and Crop Evolution. ISSN 1573-5109
Mbeyagala, E K and Karimi, R and Binagwa, P H and Amuge, E S and Vemula, A K and Nair, R M (2023) Yield and Mineral Composition among Mungbean [Vigna radiata (L.) R. Wilczek] Genotypes Grown in Different Agroecologies in East Africa. International Journal of Agronomy, 2023. pp. 1-17. ISSN 1687-8167
Padhan, B K and Sathee, L and Kumar, S and Chinnusamy, V and Krishnan, S G and Kumar, A (2023) Nitrogen dose dependent changes in leaf greenness, crop phenology, grain nitrogen content and yield in rice (Oryza sativa L.) sub-species. Indian Journal of Genetics and Plant Breeding (TSI), 83 (2). pp. 176-184. ISSN 0975-6906
Pandey, M K and Mir, R R and Nese, S (2023) The Plant Genome special section: Grain quality and nutritional genomics for breeding next-generation crops. The Plant Genome (TSI), 16 (4). pp. 1-4. ISSN 1940-3372
Ramu, P and Srivastava, R K and Sanyal, A and Fengler, K and Cao, J and Zhang, Y and Nimkar, M and Gerke, J and Shreedharan, S and Llaca, V and May, G and Peterson-Burch, B and Lin, H and King, M and Das, S and Bhupesh, V and Mandaokar, A and Maruthachalam, K and Krishnamurthy, P and Gandhi, H and Rathore, A and Gupta, R and Chitikineni, A and Bajaj, P and Gupta, S K and Satyavathi, C T and Pandravada, A and Varshney, R K and Babu, R (2023) Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology, 6. 01-11. ISSN 2399-3642
Rasool, B and Summuna, B and Djalovic, I and Shah, T A and Sheikh, P A and Gupta, S and Tyagi, S and Bilal, S and Varshney, R K and Abidi, I and Kumar, J and Penmetsa, R V and Khandey, I and Kumar, U and Sofi, P A and Khan, M A and Bhat, M A and Wani, F J and Thudi, M and Mir, R R (2023) Delineating Marker-Trait Associations for Fusarium Wilt in Chickpea Using the Axiom® CicerSNP Array. Phytopathology, 113 (5). ISSN 1943-7684
Ruperao, P and Bajaj, P and Subramani, R and Yadav, R and Lachagari, V B R and Lekkala, S P and Rathore, A and Archak, S and Angadi, U B and Singh, R and Singh, K and Mayes, S and Rangan, P (2023) A pilot-scale comparison between single and double-digest RAD markers generated using GBS strategy in sesame (Sesamum indicum L.). PLoS ONE, 18 (6). 01-19. ISSN 1932-6203
Ruperao, P and Gandham, P and Odeny, D A and Mayes, S and Selvanayagam, S and Thirunavukkarasu, N and Das, R R and Srikanda, M and Gandhi, H and Habyarimana, E and Manyasa, E and Nebie, B and Deshpande, S P and Rathore, A (2023) Exploring the sorghum race level diversity utilizing 272 sorghum accessions genomic resources. Frontiers in Plant Science, 14. 01-15. ISSN 1664-462X
Ruperao, P and Rangan, P and Shah, T and Thakur, V and Kalia, S and Mayes, S and Rathore, A (2023) The Progression in Developing Genomic Resources for Crop Improvement. Life, 13 (8). 01-28. ISSN 2075-1729
Sakhale, S A and Yadav, S and Clark, L V and Lipka, A E and Kumar, A and Sacks, E J (2023) Genome-wide association analysis for emergence of deeply sown rice (Oryza sativa) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field. Frontiers in Plant Science (TSI), 14. 01-17. ISSN 1664-462X
Saroha, A and Gomashe, S S and Kaur, V and Pal, D and Ujjainwal, S and Aravind, J and Singh, M and Rajkumar, S and Singh, K and Kumar, A and Wankhede, D P (2023) Genetic dissection of thousand-seed weight in linseed (Linum usitatissimum L.) using multi-locus genome-wide association study. Frontiers in Plant Science (TSI), 14. pp. 1-15. ISSN 1664-462X
Saxena, K B and Reddy, L J and Saxena, R K (2023) Breeding high-protein pigeonpea genotypes and their agronomic and biological assessments. Plant Breeding, 142. pp. 129-139. ISSN 1439-0523
Semalaiyappan, J and Selvanayagam, S and Rathore, A and Gupta, S K and Chakraborty, A and Gujjula, K R and Haktan, S and Viswanath, A and Malipatil, R and Shah, P and Govindaraj, M and Ignacio, J C and Reddy, S and Singh, A K and Thirunavukkarasu, N (2023) Development of a new AgriSeq 4K mid-density SNP genotyping panel and its utility in pearl millet breeding. Frontiers in Plant Science, 13. 01-14. ISSN 1664-462X
Sharma, V and Gangurde, S S and Nayak, S N and Gowda, A S and Sukanth, B S and Mahadevaiah, S S and Manohar, S S and Choudhary, R S and Anitha, T and Malavalli, S S and Srikanth, S N and Bajaj, P and Sharma, S and Varshney, R K and Latha, P and Janila, P and Bhat, R S and Pandey, M K (2023) Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut. Frontiers in Plant Science (TSI), 14. 01-21. ISSN 1664-462X
Singh, A and Mahato, A K and Maurya, A and Rajkumar, S and Singh, A K and Bhardwaj, R and Kaushik, S K and Kumar, S and Gupta, V and Singh, K and Singh, R (2023) Amaranth Genomic Resource Database: an integrated database resource of Amaranth genes and genomics. Frontiers in Plant Science (TSI), 14. 01-13. ISSN 1664-462X
Song, B and Ning, W and Wei, D and Jiang, M and Zhu, K and Wang, X and Edwards, D and Odeny, D A and Cheng, S (2023) Plant genome resequencing and population genomics: Current status and future prospects. Molecular Plant (TSI), 16. pp. 1252-1268. ISSN 1674-2052
Sun, M and Yan, H and Zhang, A and Jin, Y and Lin, C and Luo, L and Wu, B and Fan, Y and Tian, S and Cao, X and Wang, Z and Luo, J and Yang, Y and Jia, J and Zhou, P and Tang, Q and Jones, C S and Varshney, R K and Srivastava, R K and He, M and Xie, Z and Wang, X and Feng, G and Nie, G and Huang, D and Zhang, X and Zhu, F and Huang, L (2023) Milletdb: a multi-omics database to accelerate the research of functional genomics and molecular breeding of millets. Plant Biotechnology Journal, 21. pp. 2348-2357. ISSN 1467-7652
Susmitha, P and Kumar, P and Yadav, P and Sahoo, S and Kaur, G and Pandey, M K and Singh, V and Tseng, T M and Gangurde, S S (2023) Genome-wide association study as a powerful tool for dissecting competitive traits in legumes. Frontiers in Plant Science (TSI), 14. 01-20. ISSN 1664-462X
Thudi, M and Samineni, S and Li, W and Boer, M P and Roorkiwal, M and Yang, Z and Ladejobi, F and Zheng, C and Chitikineni, A and Nayak, S and He, Z and Valluri, V K and Bajaj, P and Khan, A W and Gaur, P M and Eeuwijk, F v and Mott, R and Xin, L and Varshney, R K (2023) Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372
Vats, G and Das, D and Gupta, R and Signh, A and Maurya, A and Rajkumar, S and Singh, A K and Bharadwaj, R and Kumar, S and Kaushik, S K and Gupta, V and Singh, K and Singh, R (2023) Validation of Genome-Wide SSR Markers Developed for Genetic Diversity and Population Structure Study in Grain Amaranth (Amaranthus hypochondriacus). Agriculture, 13 (2). pp. 1-14. ISSN 2077-0472
Vinutha, K S and Reddy, S E D and Gaddameedi, A and Kiranmayee, K N S U and Naravula, J and Kishor, P B K and Penna, S (2023) Genomics breeding approaches for developing Sorghum bicolor lines with stress resilience and other agronomic traits. Current Plant Biology, 37. pp. 1-11. ISSN 2214-6628
Wodebo, K Y and Tolemariam, T and Demeke, S and Garedew, W and Tesfaye, T and Zeleke, M and Gemiyu, D and Bedeke, W and Wamatu, J and Sharma, M (2023) AMMI and GGE Biplot Analyses for Mega-Environment Identification and Selection of Some High-Yielding Oat (Avena sativa L.) Genotypes for Multiple Environments. Plants (TSI), 12 (17). pp. 1-18. ISSN 2223-7747
Yadav, A K and Singh, C K and Kalia, R K and Mittal, S and Wankhede, D P and Kakani, R K and Ujjainwal, S and Aakash, . and Saroha, A and Nathawat, N S and Rani, R and Panchariya, P and Choudhary, M and Solanki, K and Chaturvedi, K K and Archak, S and Singh, K and Singh, G P and Singh, A K (2023) Genetic diversity, population structure, and genome‑wide association study for the flowering trait in a diverse panel of 428 moth bean (Vigna aconitifolia) accessions using genotyping by sequencing. BMC Plant Biology (TSI), 23. pp. 1-17. ISSN 1471-2229
Yan, H and Sun, M and Zhang, Z and Jin, Y and Zhang, A and Lin, C and Wu, B and He, M and Xu, B and Wang, J and Qin, P and Mendieta, J P and Nie, G and Wang, J and Jones, C S and Feng, G and Srivastava, R K and Zhang, X and Bombarely, A and Luo, D and Jin, L and Peng, Y and Wang, X and Ji, Y and Tian, S and Huang, L (2023) Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet. Nature Genetics, 55. pp. 507-518. ISSN 1546-1718
Zhang, C and Xie, W and Fu, H and Chen, Y and Chen, H and Cai, T and Yang, Q and Zhuang, Y and Zhong, X and Chen, K and Gao, M and Liu, F and Wan, Y and Pandey, M K and Varshney, R K and Zhuang, W (2023) Whole genome resequencing identifies candidate genes and allelic diagnostic markers for resistance to Ralstonia solanacearum infection in cultivated peanut (Arachis hypogaea L.). Frontiers in Plant Science (TSI), 13. 01-28. ISSN 1664-462X
Bhinda, M S and Joshi, D C and Parihar, M and Meena, R P and Joshi, P and Gupta, A and Kant, L and Sood, S (2023) Genetics, breeding, and genomics of Indian barnyard millet (Echinochloa frumentacea): status and perspectives. In: Neglected and Underutilized Crops Future Smart Food. Elsevier, United Kingdom, pp. 115-135. ISBN 978-0-323-90537-4
Joshi, P and Gupta, S K and Ojulong, H and Sharma, R and Vetriventhan, M and Kudapa, H and Choudhary, S and Naresh, D and Kholova, J and Sajja, S (2023) Finger Millet Improvement in Post-genomic Era: Hundred Years of Breeding and Moving Forward. In: Smart Plant Breeding for Field Crops in Post-genomics Era. Springer Nature Singapore Pte Ltd., Singapore, pp. 221-253. ISBN 978-981-19-8218-7
Ojulong, H F and Manyasa, E and Patrick, S and Oduori, H and Adikini, S and Nyaligwa, L and Mushoriwa, H (2023) Genetic Diversity for Grain Nutrients Content in Finger Millet (Eleusine Coracana (L.) Gaertn.) Germplasm. In: Nutriomics of Millet Crops. CRC Press, Boca Raton, pp. 1-26. ISBN 9781003275657