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Bayer, P E and Valliyodan, B and Hu, H and Marsh, J I and Yuan, Y and Vuong, T D and Patil, G and Song, Q and Batley, J and Varshney, R K and Lam, H M and Edwards, D and Nguyen, H T (2021) Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome (TSI). pp. 1-12. ISSN 1940-3372
Bhogireddy, S and Babu, M S and Swamy, K N and Vishnukiran, T and Subrahmanyam, D and Sarla, N and Voleti, S R and Rao, P R and Mangrauthia, S K (2021) Expression Dynamics of Genes and microRNAs at Different Growth Stages and Heat Treatments in Contrasting High Temperature Responsive Rice Genotypes. Journal of Plant Growth Regulation, 41. pp. 74-91. ISSN 1435-8107
Bhogireddy, S and Mangrauthia, S K and Kumar, R and Pandey, A K and Singh, S and Jain, A and Budak, H and Varshney, R K and Kudapa, H (2021) Regulatory non-coding RNAs: a new frontier in regulation of plant biology. Functional & Integrative Genomics (TSI), 21 (3-4). pp. 313-330. ISSN 1438-793X
Bohra, A and Jha, U C and Naik, S J S and Mehta, S and Tiwari, A and Maurya, A K and Singh, D and Yadav, V and Patil, P G and Saxena, R K and Varshney, R K (2021) Genomics: Shaping Legume Improvement. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 49-89. ISBN 978-3-030-64500-7
Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799
Bollam, S and Romana, K K and Rayaprolu, L and Anil kumar, V and Das, R R and Rathore, A and Gandham, P and Chander, G and Deshpande, S P and Gupta, R (2021) Nitrogen Use Efficiency in Sorghum: Exploring Native Variability for Traits Under Variable N-Regimes. Frontiers in Plant Science (TSI), 12 (643192). pp. 1-19. ISSN 1664-462X
Gangurde, S S and Nayak, S N and Joshi, P and Purohit, S and Sudini, H K and Chitikineni, A and Hong, Y and Guo, B and Chen, X and Pandey, M K and Varshney, R K (2021) Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut. International Journal of Molecular Sciences (TSI), 22 (4491). pp. 1-23. ISSN 1422-0067
Getahun, T and Tesfaye, K and Fikre, A and Haileslassie, T and Chitikineni, A and Thudi, M and Varshney, R K (2021) Molecular Genetic Diversity and Population Structure in Ethiopian Chickpea Germplasm Accessions. Diversity (TSI), 13 (6). pp. 1-15. ISSN 1424-2818
Ghatak, A and Chaturvedi, P and Bachmann, G and Valledor, L and Ramšak, Z and Bazargani, M M and Bajaj, P and Jegadeesan, S and Li, W and Sun, X and Gruden, K and Varshney, R K and Weckwerth, W (2021) Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. Frontiers in Plant Science (TSI), 11. pp. 1-24. ISSN 1664-462X
Ghatak, A and Schindler, F and Bachmann, G and Engelmeier, D and Bajaj, P and Brenner, M and Fragner, L and Varshney, R K and Subbarao, G V and Chaturvedi, P and Weckwerth, W (2021) Root exudation of contrasting drought-stressed pearl millet genotypes conveys varying biological nitrification inhibition (BNI) activity. Biology and Fertility of Soils (TSI). ISSN 0178-2762
Gunnabo, A H and Geurts, R and Wolde-meskel, E and Degefu, T and Giller, K E and Heerwaarden, J V (2021) Phylogeographic distribution of rhizobia nodulating common bean (Phaseolus vulgaris L.) in Ethiopia. FEMS Microbiology Ecology, 97 (4). pp. 1-16. ISSN 0168-6496
Hong, Y and Pandey, M K and Lu, Q and Liu, H and Gangurde, S S and Li, S and Liu, H and Li, H and Liang, X and Varshney, R K and Chen, X (2021) Genetic diversity and distinctness based on morphological and SSR markers in peanut. Agronomy Journal (TSI), 113 (6). pp. 4648-4660. ISSN 0002-1962
Jadhav, M P and Patil, M D and Hampannavar, M and Venkatesh, - and Dattatreya, P and Shirasawa, K and Janila, P and Pandey, M K and Varshney, R K and Bhat, R S (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker-assisted backcross breeding. Crop Science (TSI), 61 (4). pp. 2435-2443. ISSN 0011-183X
Karadi, A and Samineni, S and Sajja, S and Sharma, M and Thudi, M and Mallikarjuna, B P and Viswanatha, K P and Varshney, R K and Gaur, P M (2021) Molecular mapping of dry root rot resistance genes in chickpea (Cicer arietinum L.). Euphytica (TSI), 217 (6). pp. 1-13. ISSN 0014-2336
Kulwal, P L and Barmukh, R and Soren, K R and Madugula, P and Gangwar, P and Shanmugavadivel, P S and Bharadwaj, C and Konda, A K and Chaturvedi, S K and Bhandari, A and Rajain, K and Singh, N P and Roorkiwal, M and Varshney, R K (2021) Construction of a high-density genetic map and QTL analysis for yield, yield components and agronomic traits in chickpea (Cicer arietinum L.). PLOS ONE (TSI), 16 (5). pp. 1-18. ISSN 1932-6203
Kumar, N and Soren, K R and Bharadwaj, C and Sneha Priya, P R and Shrivastava, A K and Pal, M and Roorkiwal, M and Kumar, K and Patil, B S and Soni, A and Nimmy, M S and Siddique, K H M and Varshney, R K (2021) Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany (TSI), 187. pp. 1-14. ISSN 0098-8472
Mir, R R and Choudhary, N and Bawa, V and Jan, S and Singh, B and Bhat, M A and Paliwal, R and Kumar, A and Chitikineni, A and Thudi, M and Varshney, R K (2021) Allelic Diversity, Structural Analysis, and Genome-Wide Association Study (GWAS) for Yield and Related Traits Using Unexplored Common Bean (Phaseolus vulgaris L.) Germplasm From Western Himalayas. Frontiers in Genetics, 11. pp. 1-17. ISSN 1664-8021
Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836
Nelson, W C D and Siebrecht-Schöll, D J and Hoffmann, M P and Rötter, R P and Whitbread, A M and Link, W (2021) What determines a productive winter bean-wheat genotype combination for intercropping in central Germany? European Journal of Agronomy (TSI), 128. pp. 1-9. ISSN 1161-0301
Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752
Parmar, S and Deshmukh, D B and Kumar, R and Manohar, S S and Joshi, P and Sharma, V and Chaudhari, S and Variath, M T and Gangurde, S S and Bohar, R and Singam, P and Varshney, R K and Janila, P and Pandey, M K (2021) Single Seed-Based High-Throughput Genotyping and Rapid Generation Advancement for Accelerated Groundnut Genetics and Breeding Research. Agronomy (TSI), 11 (6). pp. 1-15. ISSN 2073-4395
Pazhamala, L T and Kudapa, H and Weckwerth, W and Millar, A H and Varshney, R K (2021) Systems biology for crop improvement. The Plant Genome (TSI). pp. 1-23. ISSN 1940-3372
Pujarula, V and Pusuluri, M and Bollam, S and Das, R R and Ratnala, R and Adapala, G and Thuraga, V and Rathore, A and Srivastava, R K and Gupta, R (2021) Genetic Variation for Nitrogen Use Efficiency Traits in Global Diversity Panel and Parents of Mapping Populations in Pearl Millet. Frontiers in Plant Science (TSI), 12 (625915). pp. 1-17. ISSN 1664-462X
Roorkiwal, M and Pandey, S and Thavarajah, D and Hemalatha, R and Varshney, R K (2021) Molecular Mechanisms and Biochemical Pathways for Micronutrient Acquisition and Storage in Legumes to Support Biofortification for Nutritional Security. Frontiers in Plant Science (TSI), 12 (682842). pp. 1-20. ISSN 1664-462X
Ruperao, P and Thirunavukkarasu, N and Gandham, P and Selvanayagam, S and Govindaraj, M and Nebie, B and Manyasa, E and Gupta, R and Das, R R and Odeny, D A and Gandhi, H and Edwards, D and Deshpande, S P and Rathore, A (2021) Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain. Frontiers in Plant Science (TSI), 12. ISSN 1664-462X
Samineni, S and Sajja, S B and Mondal, B and Chand, U and Thudi, M and Varshney, R K and Gaur, P M (2021) MAGIC lines in chickpea: development and exploitation of genetic diversity. Euphytica (TSI), 217 (7). pp. 1-12. ISSN 0014-2336
Saxena, K B and Saxena, R K and Varshney, R K (2021) Genetic Enhancement in Major Food Legumes: An Overview. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 1-6. ISBN 978-3-030-64500-7
Sharma, V and Gupta, P and Priscilla, K and SharanKumar, S and Hangargi, B and Veershetty, A and Ramrao, D P and Suresh, S and Narasanna, R and Naik, G R and Kumar, A and Guo, B and Zhuang, W and Varshney, R K and Pandey, M K and Kumar, R (2021) Metabolomics Intervention Towards Better Understanding of Plant Traits. Cells (TSI), 10 (2). pp. 1-32. ISSN 2073-4409
Singh, S and Kudapa, H and Garg, V and Varshney, R K (2021) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops. BMC Genomics (TSI), 22 (1). pp. 1-23. ISSN 1471-2164
Sinha, P and Singh, V K and Bohra, A and Kumar, A and Reif, J C and Varshney, R K (2021) Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theoretical and Applied Genetics (TSI), 134 (6). pp. 1829-1843. ISSN 0040-5752
Soni, P and Pandey, A K and Nayak, S N and Pandey, M K and Tolani, P and Pandey, S and Sudini, H K and Bajaj, P and Fountain, J C and Singam, P and Guo, B and Varshney, R K (2021) Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. Journal of Fungi (TSI), 7 (6). pp. 1-18. ISSN 2309-608X
Thudi, M and Chen, Y and Pang, J and Kalavikatte, D and Bajaj, P and Roorkiwal, M and Chitikineni, A and Ryan, M H and Lambers, H and Siddique, K H M and Varshney, R K (2021) Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X
Thudi, M and Palakurthi, R and Schnable, J C and Chitikineni, A and Dreisigacker, S and Mace, E and Srivastava, R K and Satyavathi, C T and Odeny, D and Tiwari, V K and Lam, H M and Hong, Y B and Singh, V K and Li, G and Xu, Y and Chen, X and Kaila, S and Nguyen, H and Sivasankar, S and Jackson, Scott A. and Close, T J and Shubo, W and Varshney, R K (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology (TSI), 257. pp. 1-18. ISSN 0176-1617
Valliyodan, B and Brown, A V and Wang, J and Patil, G and Liu, Y and Otyama, P I and Nelson, R T and Vuong, T and Song, Q and Musket, T A and Wagner, R and Marri, P and Reddy, S and Sessions, A and Wu, X and Grant, D and Bayer, P E and Roorkiwal, M and Varshney, R K and Liu, X and Edwards, D and Xu, D and Joshi, T and Cannon, S B and Nguyen, H T (2021) Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data (TSI), 8 (1). pp. 1-9. ISSN 2052-4463
Varshney, R K (2021) The Plant Genome special issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement. The Plant Genome (TSI), 14 (3). pp. 1-4. ISSN 1940-3372
Varshney, R K and Bohra, A and Yu, J and Graner, A and Zhang, Q and Sorrells, M E (2021) Designing Future Crops: Genomics-Assisted Breeding Comes of Age. Trends in Plant Science (TSI), 26 (6). pp. 631-649. ISSN 1360-1385
Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687
Wang, X and Chen, S and Ma, X and Yssel, A E J and Chaluvadi, S R and Johnson, M S and Gangashetty, P and Hamidou, F and Sanogo, M D and Zwaenepoel, A and Wallace, J and de Peer, Y and Bennetzen, J L and Van Deynze, A (2021) Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis). GigaScience (TSI), 10 (3). pp. 1-11. ISSN 2047-217X
Yadav, C B and Srivastava, R K and Beynon, S and Englyst, K and Gangashetty, P I and Yadav, R S (2021) Genetic variability and genome-wide marker association studies for starch traits contributing to low glycaemic index in pearl millet. Food and Energy Security, 11 (1). pp. 1-13. ISSN 2048-3694
Yadav, C B and Tokas, J and Yadav, D and Winters, A and Singh, R B and Yadav, R and Gangashetty, P I and Srivastava, R K and Yadav, R S (2021) Identifying Anti-Oxidant Biosynthesis Genes in Pearl Millet [Pennisetum glaucum (L.) R. Br.] Using Genome—Wide Association Analysis. Frontiers in Plant Science (TSI), 12. pp. 1-13. ISSN 1664-462X
Yan, L and Wang, Z and Song, W and Fan, P and Kang, Y and Lei, Y and Wan, L and Huai, D and Chen, Y and Wang, X and Sudini, H and Liao, B (2021) Genome sequencing and comparative genomic analysis of highly and weakly aggressive strains of Sclerotium rolfsii, the causal agent of peanut stem rot. BMC Genomics (TSI), 22 (1). pp. 1-15. ISSN 1471-2164
Zhou, X and Guo, J and Pandey, M K and Varshney, R K and Huang, L and Luo, H and Liu, N and Chen, W and Lei, Y and Liao, B and Jiang, H (2021) Dissection of the Genetic Basis of Yield-Related Traits in the Chinese Peanut Mini-Core Collection Through Genome-Wide Association Studies. Frontiers in Plant Science (TSI), 12 (637284). pp. 1-14. ISSN 1664-462X