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Altman, A and Fan, L J and Foyer, C and Cowling, W and Mittler, R and Qaim, M and Weber, A P M and Reynolds, M and Varshney, R K and Fernie, A (2021) Past and Future Milestones of Plant Breeding. Trends in Plant Science (TSI), 26 (6). pp. 530-538. ISSN 1360-1385
Annabi, N and Baker, M and Boettiger, A and Chakraborty, D and Chen, Y and Corbett, K S and Correia, B and Dahlman, J and Oliveira, T and Ertuerk, A and Yanik, M F and Henaff, E and Huch, M and Iliev, I D and Jacobs, T and Junca, H and Keung, A and Kolodkin-Gal, I and Krishnaswamy, S and Lancaster, M and Macosko, E and Martínez-Núñez, M A and Miura, K and Molloy, J and Cruz, A O and Platt, R J and Posey Jr., A D and Shao, H and Simunovic, M and Slavov, N and Takebe, T and Vandenberghe, L H and Varshney, R K and Wang, J (2021) Voices of biotech research. Nature Biotechnology (TSI), 39. pp. 281-286. ISSN 1087-0156
Ashajyothi, M and Balamurugan, A and Shashikumara, P and Pandey, N and Agarwal, D K and Tarasatyavati, C C and Varshney, R K and Nayaka, S C (2021) First Report of Pearl Millet Bacterial Leaf Blight Caused by Pantoea stewartii Subspecies indologenes in India. Plant Disease (TSI), 105 (11). p. 3736. ISSN 0191-2917
Bellucci, E and Aguilar, O M and Alseekh, S and Bett, K and Brezeanu, C and Cook, D and Rosa, L D and Delledonne, M and Dostatny, D F and Ferreira, J J and Geffroy, V and Ghitarrini, S and Kroc, M and Agrawal, S K and Logozzo, G and Marino, M and Mary-Huard, T and McClean, P and Meglič, V and Messer, T and Muel, F and Nanni, L and Neumann, K and Servalli, F and Străjeru, S and Varshney, R K and Vasconcelos, M W and Zaccardelli, M and Zavarzin, A and Bitocchi, E and Frontoni, E and Fernie, A R and Gioia, T and Graner, A and Guasch, L and Prochnow, L and Oppermann, M and Susek, K and Tenaillon, M and Papa, R (2021) The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems. The Plant Journal (TSI), 108 (3). pp. 646-660. ISSN 0960-7412
Bharadwaj, C and Tripathi, S and Soren, K R and Thudi, M and Singh, R K and Sheoran, S and Roorkiwal, M and Patil, B S and Chitikineni, A and Palakurthi, R and Vemula, A K and Rathore, A and Kumar, Y and Chaturvedi, S K and Mondal, B and Shanmugavadivel, P S and Srivastava, A K and Dixit, G P and Singh, N P and Varshney, R K (2021) Introgression of “QTL-hotspot” region enhances drought tolerance and grain yield in three elite chickpea cultivars. The Plant Genome (TSI), 14 (1). pp. 1-14. ISSN 1940-3372
Bhat, J K and Yu, D and Bohra, A and Ganie, S A and Varshney, R K (2021) Features and applications of haplotypes in crop breeding. Communications Biology, 4. pp. 1-12. ISSN 2399-3642
Bohra, A and Gandham, P and Rathore, A and Thakur, V and Saxena, R K and Naik, S J S and Varshney, R K and Singh, N P (2021) Identification of microRNAs and their gene targets in cytoplasmic male sterile and fertile maintainer lines of pigeonpea. Planta (TSI), 253. pp. 1-15. ISSN 0032-0935
Bohra, A and Kilian, B and Sivasankar, S and Caccamo, M and Mba, C and McCouch, S R and Varshney, R K (2021) Reap the crop wild relatives for breeding future crops. Trends in Biotechnology, 40 (4). pp. 412-431. ISSN 0167-7799
Bohra, A and Prasad, G and Rathore, A and Saxena, R K and Naik, S J S and Pareek, S and Jha, R and Pazhamala, L T and Datta, D and Pandey, G and Tiwari, A and Maurya, A K and Soren, K R and Akram, M and Varshney, R K and Singh, N P (2021) Global gene expression analysis of pigeonpea with male sterility conditioned by A2 cytoplasm. The Plant Genome (TSI), 14 (3). pp. 1-15. ISSN 1940-3372
Bohra, A and Rathore, A and Gandham, P and Saxena, R K and Naik, S J S and Dutta, D and Singh, I P and Singh, F and Rathore, M and Varshney, R K and Singh, N P (2021) Genome-wide comparative transcriptome analysis of the A4-CMS line ICPA 2043 and its maintainer ICPB 2043 during the floral bud development of pigeonpea. Functional and Integrative Genomics (TSI), 21. pp. 251-263. ISSN 1438-793X
Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322
Garg, V and Dudchenko, O and Wang, J and Khan, A W and Gupta, S and Kaur, P and Han, K and Saxena, R K and Kale, S M and Pham, M and Yu, J and Chitikineni, A and Zhang, Z and Fan, G and Lui, C and Valluri, V K and Meng, F and Bhandari, A and Liu, X and Yang, T and Chen, H and Valliyodan, B and Roorkiwal, M and Shi, C and Yang, H B and Durand, N C and Pandey, M K and Li, G and Barmukh, R and Wang, X and Chen, X and Lam, H M and Jiang, H and Zong, X and Liang, X and Liu, X and Liao, B and Guo, B and Jackson, S and Nguyen, H T and Zhuang, W and Shubo, W and Wang, X and Aiden, E L and Bennetzen, J L and Varshney, R K (2021) Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research, 42. pp. 315-329. ISSN 2090-1224
Hong, Y and Pandey, M K and Lu, Q and Liu, H and Gangurde, S S and Li, S and Liu, H and Li, H and Liang, X and Varshney, R K and Chen, X (2021) Genetic diversity and distinctness based on morphological and SSR markers in peanut. Agronomy Journal (TSI), 113 (6). pp. 4648-4660. ISSN 0002-1962
Jadhav, M P and Gangurde, S S and Hake, A A and Yadawad, A and Mahadevaiah, S S and Pattanashetti, S K and Gowda, M V C and Shirasawa, K and Varshney, R K and Pandey, M K and Bhat, R S (2021) Genotyping-by-Sequencing Based Genetic Mapping Identified Major and Consistent Genomic Regions for Productivity and Quality Traits in Peanut. Frontiers in Plant Science (TSI), 12. pp. 1-15. ISSN 1664-462X
Jadhav, M P and Patil, M D and Hampannavar, M and Venkatesh, - and Dattatreya, P and Shirasawa, K and Janila, P and Pandey, M K and Varshney, R K and Bhat, R S (2021) Enhancing oleic acid content in two commercially released peanut varieties through marker-assisted backcross breeding. Crop Science (TSI), 61 (4). pp. 2435-2443. ISSN 0011-183X
Kumar, Anil and Rani, M and Mani, S and Shah, P and Singh, D B and Kudapa, H and Varshney, R K (2021) Nutritional Significance and Antioxidant-Mediated Antiaging Effects of Finger Millet: Molecular Insights and Prospects. Frontiers in Sustainable Food Systems (TSI), 5. pp. 1-17. ISSN 2571-581X
Kumar, Ashish and Bohra, A and Mir, R R and Sharma, Radheshyam and Tiwari, A and Khan, M A and Varshney, R K (2021) Next generation breeding in pulses: Present status and future directions. Crop Breeding and Applied Biotechnology, 21. pp. 1-22. ISSN 1518-7853
Kumar, N and Bharadwaj, C and Sahu, S and Shiv, A and Shrivastava, A K and Reddy, S P P and Soren, K R and Patil, B S and Pal, M and Soni, A and Roorkiwal, M and Varshney, R K (2021) Genome-wide identification and functional prediction of salt- stress related long non-coding RNAs (lncRNAs) in chickpea (Cicer arietinum L.). Physiology and Molecular Biology of Plants (TSI), 27. pp. 2605-2619. ISSN 0971-5894
Kumar, N and Bharadwaj, C and Soren, K R and Meena, M C and Sneha Priya, P R and Joshi, N and Soni, A and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2021) Response of shoot ionic (Na+/K+) distribution on yield and agro-physiological traits in chickpea (Cicer arietinum L.) recombinant inbred lines population under salinity. Indian Journal of Genetics and Plant Breeding, 81 (4). pp. 590-593. ISSN 0975-6906
Kushwah, A and Bhatia, D and Singh, I and Thudi, M and Singh, G and Bindra, S and Vij, S and Gill, B S and Bharadwaj, C and Singh, Sarvjeet and Varshney, R K (2021) Identification of stable heat tolerance QTLs using inter-specific recombinant inbred line population derived from GPF 2 and ILWC 292. PLoS ONE (TSI), 16 (8). pp. 1-17. ISSN 1932-6203
Li, W and Huang, L and Liu, N and Pandey, M K and Chen, Y and Cheng, L and Guo, J and Yu, B and Luo, H and Zhou, X and Huai, D and Chen, W and Yan, L and Wang, X and Lei, Y and Varshney, R K and Liao, B and Jiang, H (2021) Key Regulators of Sucrose Metabolism Identified through Comprehensive Comparative Transcriptome Analysis in Peanuts. International Journal of Molecular Sciences (TSI), 22 (14). pp. 1-20. ISSN 1661-6596
Liu, H and Hu, D and Du, P and Wang, L and Liang, X and Li, H and Lu, Q and Li, S and Liu, H and Chen, X and Varshney, R K and Hong, Y (2021) Single-cell RNA-seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut (Arachis hypogaea L.). Plant Biotechnology Journal (TSI), 19 (11). pp. 2261-2276. ISSN 1467-7644
Manchikatla, P K and Kalavikatte, D and Mallikarjuna, B P and Palakurthi, R and Khan, A W and Jha, U C and Bajaj, P and Singam, P and Chitikineni, A and Varshney, R K and Thudi, M (2021) MutMap Approach Enables Rapid Identification of Candidate Genes and Development of Markers Associated With Early Flowering and Enhanced Seed Size in Chickpea (Cicer arietinum L.). Frontiers in Plant Science (TSI), 12. pp. 1-11. ISSN 1664-462X
Manjunatha, L and Basavaraja, T and Manjunatha, N and Srinivasa, N and Kumar, Vijay and Chandora, R and Singh, M and Singh, N P (2021) Identification of stable resistant donors against necrosis inducing strain of bean common mosaic virus in common bean (Phaseolus vulgaris L.). Archives of Phytopathology and Plant Protection, 54 (15-16). pp. 1033-1046. ISSN 0323-5408
Montesinos-López, O A and Montesinos-Lopez, A and Mosqueda-González, B A and Bentley, A R and Lillemo, M and Varshney, R K and Crossa, J (2021) A New Deep Learning Calibration Method Enhances Genome-Based Prediction of Continuous Crop Traits. Frontiers in Genetics (TSI), 12. pp. 1-12. ISSN 1664-8021
Montesinos-López, O A and Montesinos-López, J C and Montesinos-Lopez, A and Ramírez-Alcaraz, J M and Poland, J and Singh, R and Dreisigacker, S and Crespo, L and Mondal, S and Govidan, V and Juliana, P and Espino, J H and Shrestha, S and Varshney, R K and Crossa, J (2021) Bayesian multitrait kernel methods improve multienvironment genome-based prediction. G3: Genes, Genomes, Genetics (TSI), 12 (2). pp. 1-17. ISSN 2160-1836
Nguyen, D T and Hayes, J E and Atieno, J and Li, Y and Baumann, U and Pattison, A and Bramley, H and Hobson, K and Roorkiwal, M and Varshney, R K and Colmer, T D and Sutton, T (2021) The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data. Theoretical and Applied Genetics, 135. pp. 107-124. ISSN 0040-5752
Rajesh, M K and Gangurde, S S and Pandey, M K and Niral, V and Sudha, R and Jerard, B A and Kadke, G N and Sabana, A A and Muralikrishna, K S and Samsudeen, K and Karun, A and Prasad, T S K (2021) Insights on Genetic Diversity, Population Structure, and Linkage Disequilibrium in Globally Diverse Coconut Accessions Using Genotyping-by-Sequencing. OMICS: A Journal of Integrative Biology, 25 (12). ISSN 1536-2310
Saradadevi, R and Mukankusi, C and Li, L and Amongi, W and Mbiu, J P and Raatz, B and Ariza, D and Beebe, S and Varshney, R K and Huttner, E and Kinghorn, B and Banks, R and Rubyogo, J C and Siddique, K H M and Cowling, W A (2021) Multivariate genomic analysis and optimal contributions selection predicts high genetic gains in cooking time, iron, zinc, and grain yield in common beans in East Africa. The Plant Genome, 14 (3). pp. 1-16. ISSN 1940-3372
Saxena, R K and Jiang, Y and Khan, A W and Zhao, Y and Singh, V K and Bohra, A and Sonappa, M and Rathore, A and Kumar, C V S and Saxena, K B and Reif, J and Varshney, R K (2021) Characterization of heterosis and genomic prediction-based establishment of heterotic patterns for developing better hybrids in pigeonpea. The Plant Genome (TSI), 14 (3). pp. 1-13. ISSN 1940-3372
Sharma, Madhvi and Gangurde, S S and Salgotra, R K and Kumar, Bupesh and Singh, A K and Pandey, M K (2021) Genetic mapping for grain quality and yield-attributed traits in Basmati rice using SSR-based genetic map. Journal of Biosciences (TSI), 46. pp. 1-14. ISSN 0250-5991
Varshney, R K (2021) The Plant Genome special issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement. The Plant Genome (TSI), 14 (3). pp. 1-4. ISSN 1940-3372
Varshney, R K and Bohra, A and Roorkiwal, M and Barmukh, R and Cowling, W and Chitikineni, A and Lam, H M and Hickey, L T and Croser, J and Edwards, D and Farooq, M and Crossa, J and Weckwerth, W and Millar, A H and Kumar, A and Bevan, M W and Siddique, K H M (2021) Rapid delivery systems for future food security. Nature Biotechnology (TSI), 39. pp. 1179-1181. ISSN 1087-0156
Varshney, R K and Bohra, A and Roorkiwal, M and Barmukh, R and Cowling, W A and Chitikineni, A and Lam, H M and Hickey, L T and Croser, J S and Bayer, P E and Edwards, D and Crossa, J and Weckwerth, W and Millar, H and Kumar, A and Bevan, M W and Siddique, K H M (2021) Fast-forward breeding for a food-secure world. Trends in Genetics, 37 (12). pp. 1124-1136. ISSN 0168-9525
Varshney, R K and Roorkiwal, M and Sun, S and Bajaj, P and Chitikineni, A and Thudi, M and Singh, N P and Du, X and Upadhyaya, H D and Khan, A W and Wang, Y and Garg, V and Fan, G and Cowling, W A and Crossa, J and Gentzbittel, L and Voss-Fels, K P and Valluri, V K and Sinha, P and Singh, V K and Ben, C and Rathore, A and Punna, R and Singh, M K and Tar’an, B and Bharadwaj, C and Yasin, M and Pithia, M S and Singh, S and Soren, K R and Kudapa, H and Jarquín, D and Cubry, P and Hickey, L T and Dixit, G P and Thuillet, A and Hamwieh, A and Kumar, S and Deokar, A A and Chaturvedi, S K and Francis, A and Howard, R and Chattopadhyay, D and Edwards, D and Lyons, E and Vigouroux, Y and Hayes, B J and Wettberg, E v and Datta, S K and Yang, H and Nguyen, H T and Wang, J and Siddique, K H M and Mohapatra, T and Bennetzen, J L and Xu, X and Liu, X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599. pp. 622-627. ISSN 1476-4687
Xiao, Y and Liu, H and Li, H and Liu, Q and Varshney, R K and Chen, X and Hong, Y (2021) Widely targeted metabolomics characterizes the dynamic changes of chemical profile in postharvest peanut sprouts grown under the dark and light conditions. LWT - Food Science and Technology, 152. ISSN 0023-6438
Zanini, S F and Bayer, P E and Wells, R and Snowdon, R J and Batley, J and Varshney, R K and Nguyen, H T and Edwards, D and Golicz, A A (2021) Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. The Plant Genome, 15 (1). pp. 1-18. ISSN 1940-3372
Zhang, S and Ghatak, A and Bazargani, M M and Bajaj, P and Varshney, R K and Chaturvedi, P and Jiang, D and Weckwerth, W (2021) Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process. The Plant Journal (TSI), 107 (3). pp. 669-687. ISSN 0960-7412
Zhang, X and Pandey, M K and Wang, J and Zhao, K and Ma, X and Li, Z and Zhao, K and Gong, F and Guo, B and Varshney, R K and Yin, D (2021) Chromatin spatial organization of wild type and mutant peanuts reveals high-resolution genomic architecture and interaction alterations. Genome Biology, 22. pp. 1-21. ISSN 1474-760X
Zhao, C and He, L and Xia, H and Zhou, X and Geng, Y and Hou, L and Li, P and Li, G and Zhao, S and Ma, C and Tang, R and Pandey, M K and Varshney, R K and Wang, X (2021) De novo full length transcriptome analysis of Arachis glabrata provides insights into gene expression dynamics in response to biotic and abiotic stresses. Genomics, 113 (3). pp. 1579-1588. ISSN 0888-7543
Saxena, K B and Saxena, R K and Varshney, R K (2021) Genetic Enhancement in Major Food Legumes: An Overview. In: Genetic Enhancement in Major Food Legumes. Springer, Cham, Switzerland AG, pp. 1-6. ISBN 978-3-030-64500-7