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Gandham, P and Vadla, N and Saji, A and Srinivas, V and Ruperao, P and Selvanayagam, S and Saxena, R K and Rathore, A and Gopalakrishnan, S and Thakur, V (2024) Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth‑promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA‑696). Scientific Reports (TSI), 14. pp. 1-11. ISSN 2045-2322
Kumar, Ajay and Batra, T and Vishwakarma, H and Maurya, R and Ruperao, P and Yadav, Rashmi and Subramani, R and Singh, G P and Rangan, P (2024) Genome-wide analysis of the calmodulin-binding transcription activator (CAMTA) gene family in Sesamum indicum L., and its role in abiotic stress tolerance traits. Plant Stress, 13. pp. 1-16. ISSN 2667-064X
Thakur, N R and Gorthy, S and Vemula, A K and Odeny, D A and Ruperao, P and Sargar, P R and Mehtre, S P and Kalpande, H V and Habyarimana, E (2024) Genome‑wide association study and expression of candidate genes for Fe and Zn concentration in sorghum grains. Scientific Reports (TSI), 14. pp. 1-17. ISSN 2045-2322
Ruperao, P and Bajaj, P and Yadav, R and Angamuthu, M and Subramani, R and Rai, V and Tiwari, K and Rathore, A and Singh, K and Singh, G P and Angadi, U B and Mayes, S and Rangan, P (2024) Double-digest restriction-associated DNA sequencing-based genotyping and its applications in sesame germplasm management. The Plant Genome (TSI). pp. 1-16. ISSN 1940-3372
Ruperao, P and Rangan, P and Shah, T and Thakur, V and Kalia, S and Mayes, S and Rathore, A (2023) The Progression in Developing Genomic Resources for Crop Improvement. Life, 13 (8). 01-28. ISSN 2075-1729
Ruperao, P and Bajaj, P and Subramani, R and Yadav, R and Lachagari, V B R and Lekkala, S P and Rathore, A and Archak, S and Angadi, U B and Singh, R and Singh, K and Mayes, S and Rangan, P (2023) A pilot-scale comparison between single and double-digest RAD markers generated using GBS strategy in sesame (Sesamum indicum L.). PLoS ONE, 18 (6). 01-19. ISSN 1932-6203
Ruperao, P and Gandham, P and Odeny, D A and Mayes, S and Selvanayagam, S and Thirunavukkarasu, N and Das, R R and Srikanda, M and Gandhi, H and Habyarimana, E and Manyasa, E and Nebie, B and Deshpande, S P and Rathore, A (2023) Exploring the sorghum race level diversity utilizing 272 sorghum accessions genomic resources. Plant Science (TSI), 14 (114351). pp. 1-15. ISSN 1664-462X
Ruperao, P and Gandham, P and Odeny, D A and Mayes, S and Selvanayagam, S and Thirunavukkarasu, N and Das, R R and Srikanda, M and Gandhi, H and Habyarimana, E and Manyasa, E and Nebie, B and Deshpande, S P and Rathore, A (2023) Exploring the sorghum race level diversity utilizing 272 sorghum accessions genomic resources. Frontiers in Plant Science, 14. 01-15. ISSN 1664-462X
Li, Y and Ruperao, P and Batley, J and Edwards, D and Martin, W and Hobson, K and Sutton, T (2021) Genomic prediction of preliminary yield trials in chickpea: Effect of functional annotation of SNPs and environment. The Plant Genome (TSI), 15 (1). pp. 1-13. ISSN 1940-3372
Ruperao, P and Thirunavukkarasu, N and Gandham, P and Selvanayagam, S and Govindaraj, M and Nebie, B and Manyasa, E and Gupta, R and Das, R R and Odeny, D A and Gandhi, H and Edwards, D and Deshpande, S P and Rathore, A (2021) Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain. Frontiers in Plant Science (TSI), 12. ISSN 1664-462X
Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ). Plant Biotechnology Journal (TSI). pp. 1-9. ISSN 1467-7644
Kale, S M and Jaganathan, D and Ruperao, P and Chen, C and Punna, R and Kudapa, H and Thudi, M and Roorkiwal, M and Katta, M A V S K and Doddamani, D and Garg, V and Kavi Kishor, P B and Gaur, P M and Nguyen, H T and Batley, J and Edwards, D and Sutton, T and Varshney, R K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (15296). 01-14. ISSN 2045-2322
Doddamani, D and Khan, A W and Katta, M A V S K and Agarwal, G and Thudi, M and Ruperao, P and Edwards, D and Varshney, R K (2015) CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. Database. 01-07. ISSN 1758-0463
Bayer, P E and Ruperao, P and Mason, A S and Stiller, J and Chan, C K K and Hayashi, S and Long, Y and Meng, J and Sutton, T and Visendi, P and Varshney, R K and Batley, J and Edwards, D (2015) High‑resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6). pp. 1039-1047. ISSN 0040-1706
Azam, S and Rathore, A and Shah, T and Mohan, T and Amindala, BP and Ruperao, P and Katta, M A V S K and Varshney, R K (2014) An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data. PLoS ONE, 9 (7). pp. 1-11. ISSN 1932-6203
Ruperao, P and Chan, C-K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrana, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal. ISSN 1467-7652
Ruperao, P and Bollam, S (2024) Omics Approaches for Improving Sorghum Value Chains. In: Omics and Biotechnological Approaches for Product Profile-Driven Sorghum Improvement. Springer, Singapore, pp. 359-376. ISBN 978-981-97-4346-9
Ruperao, P and Gandham, P and Rathore, A (2022) Construction of Practical Haplotype Graph (PHG) with the Whole-Genome Sequence Data. In: Plant Bioinformatics Methods in Molecular Biology. Methods in Molecular Biology, 3 (2443). Humana, New York, pp. 273-284. ISBN 978-1-0716-2067-0
Ruperao, P and Bayer, P and Kenneth Chan, C K and Hayashi, S and Roorkiwal, M and Chitikineni, A and Sutton, T and Batley, J and Varshney, R K and Edwards, D (2017) Constructing improved chickpea genome assemblies using skimGBS. In: InterDrought-V, February 21-25, 2017, Hyderabad, India.
Ruperao, P and Bayer, P E and Chan, C K K and Azam, S and Karafiatova, M and Hayashi, S and Cizkova, J and Saxena, R K and Simkova, H and Song, C and Vrána, J and Chitikineni, A and Visendi, P and Gaur, P M and Millan, T and Singh, K B and Taran, B and Wang, J and Batley, J and Dolezel, J and Varshney, R K and Edwards, D (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. The University of Queensland, Australia.