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Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Garg, V and Khan, A W and Kudapa, H and Kale, S M and Chitikineni, A and Qiwei, S and Sharma, M and Li, C and Zhang, B and Xin, L and Kavi Kishor, P B and Varshney, R K (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal (TSI), 17 (5). pp. 914-931. ISSN 1467-7644
Kudapa, H and Barmukh, R and Garg, V and Chitikineni, A and Samineni, S and Agarwal, G and Varshney, R K (2023) Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea. International Journal of Molecular Sciences (TSI), 24 (2). pp. 1-20. ISSN 1422-0067
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867
Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203
Sama, V S A K and Kudapa, H and Bhaskar Naik, S and Sundaram, R M and Viraktamath, B C and Bentur, J S (2012) Mapping and marker-assisted breeding of a gene allelic to the major Asian rice gall midge resistance gene Gm8. Euphytica, 187 (3). pp. 393-400. ISSN 0014-2336
Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203
Palit, P and Kudapa, H and Zougmore, R and Kholova, J and Whitbread, A M and Sharma, M and Varshney, R K (2020) An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario. Current Plant Biology, 22. pp. 1-12. ISSN 2214-6628
Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Thudi, M and Gaur, P M and Krishnamurthy, L and Mir, R R and Kudapa, H and Fikre, A and Kimurto, P and Tripathi, S and Soren, K R and Mulwa, R and Bharadwaj, C and Datta, S and Chaturvedi, S K and Varshney, R K (2014) Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology. pp. 1-13. ISSN 1445-4408
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Dubey, A and Farmer, A and Schlueter, J and Cannon, S B and Abernathy, B and Tuteja, R and Woodward, J and Shah, T and Mulasmanovic, B and Kudapa, H and Raju, N L and Gothalwal, R and Pande, S and Xiao, Y and Town, C D and Singh, N K and May, G D and Jackson, S and Varshney, R K (2011) Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Research, 18 (3). pp. 153-164. ISSN 1340-2838, 1756-1663
Hiremath, P J and Farmer, A and Cannon, S B and Woodward, J and Kudapa, H and Tuteja, R and Kumar, A and Bhanuprakash, A and Mulaosmanovic, B and Gujaria, N and Krishnamurthy, L and Gaur, P M and Kavi Kishor, P B and Shah, T and Srinivasan, R and Lohse, M and Xiao, Y and Town, C D and Cook, D R and May, G D and Varshney, R K (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal, 9. pp. 922-931.
Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Kudapa, H and Bharti, A K and Cannon, S B and Farmer, A D and Mulaosmanovic, B and Kramer, R and Bohra, A and Weeks, N T and Crow, J A and Tuteja, R and Shah, T and Dutta, S and Gupta, D K and Singh, Archana and Gaikwad, K and Sharma, T R and May, G D and Singh, N K and Varshney, R K (2012) A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms. Molecular Plant, 5 (5). pp. 1020-1028. ISSN 1752-9867
Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203
Kudapa, H and Ramalingam, A and Nayakoti, S and Chen, X and Zhuang, W and Liang, X and Kahl, G and Edwards, D. and Varshney, R K (2013) Functional genomics to study stress responses in crop legumes: progress and prospects. Functional Plant Biology, 14 (12). pp. 1221-1233. ISSN 1445-4408
Varshney, R K and Kudapa, H and Roorkiwal, M and Thudi, M and Pandey, M K and Saxena, R K and Chamarthi, S K and Murali Mohan, S and Mallikarjuna, N and Upadhyaya, H D and Gaur, P M and Krishnamurthy, L and Saxena, K B and Nigam, S N and Pande, S (2012) Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences, 37 (5). pp. 811-820. ISSN 0973-7138
Varshney, R K and Kudapa, H (2013) Legume biology: the basis for crop improvement. Functional Plant Biology, 40 (12). pp. 5-8. ISSN 1445-4408
Gopalakrishnan, S and Srinivas, V and Prakash, B and Arumugam, S and Vijayabharathi, R and Rupela, O and Kudapa, H and Krishnamohan, K and Varshney, R K (2014) Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice. Microbiological Research, 169. pp. 40-48. ISSN 0944-5013
Sreevidya, M and Gopalakrishnan, S and Kudapa, H and Varshney, R K (2016) Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea. Brazilian Journal of Microbiology, 47 (1). pp. 85-95. ISSN 1517-8382
Maharajan, T and Krishna, T P A and Krishnakumar, N M and Vetriventhan, M and Kudapa, H and Ceasar, S A (2024) Role of Genome Sequences of Major and Minor Millets in Strengthening Food and Nutritional Security for Future Generations. Agriculture (TSI), 14 (5). pp. 1-28. ISSN 2077-0472
Kudapa, H and Azam, S and Sharpe, A G and Taran, B and Li, R and Deonovic, B and Cameron, C and Farmer, A D and Cannon, S B and Varshney, R K (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE, 9 (1). pp. 1-12. ISSN 1932-6203
Channale, S and Kalavikatte, D and Thompson, J P and Kudapa, H and Bajaj, P and Varshney, R K and Zwart, R S and Thudi, M (2021) Transcriptome analysis reveals key genes associated with root‑lesion nematode Pratylenchus thornei resistance in chickpea. Scientific Reports (TSI), 11. pp. 1-11. ISSN 2045-2322
Garg, V and Chitikineni, A and Sharma, M and Ghosh, R and Samineni, S and Varshney, R K and Kudapa, H (2023) Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.). The Plant Genome (TSI). 01-16. ISSN 1940-3372
Srungarapu, R and Mahendrakar, M D and Mohammad, L A and Chand, U and Jagarlamudi, V R and Kondamudi, K P and Kudapa, H and Samineni, S (2022) Genome-Wide Association Analysis Reveals Trait-Linked Markers for Grain Nutrient and Agronomic Traits in Diverse Set of Chickpea Germplasm. Cells (TSI), 11(15) (2457). pp. 1-21. ISSN 2073-4409