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Gupta, A and Kumar, P and Kumari, J and Tyagi, B S and Patra, B C and Panda, R R and Gupta, N C and Kumar, Vishnu and Dalamu, - and Vetriverithan, M and Pardeshi, P and Bhardwaj, C and Singh, G and Singh, G P (2025) Crop Wild Relatives and their Utilization in Crop Improvement. In: Textbook of Plant Genetic Resources. Springer, Singapore, pp. 379-435. ISBN 978-981-96-5023-1

Lohithaswa, H C and Shreekanth, S M and Banakara, S and Rajanna, L T and Kashyap, G S S and Hosakoti, S and Gonal, B and Mallikarjuna, M G and Gangashetty, P I (2025) Breeding Climate-Resilient Pigeonpea in Climate Change Era: Current Breeding Strategies and Prospects. In: Breeding Climate Resilient and Future Ready Pulse Crops. Springer, Singapore, pp. 255-288. ISBN 978-981-96-0482-1

Naik, Y D and Rangari, S K and García-Caparros, P and Jan, F and Gangurde, S S and Zwart, R and Aski, M S and Mendu, V and Jha, U and Elango, D and Pandey, M K and Mir, R R and Varshney, R K and Punnuri, S M and Thudi, M (2025) Genomics, Pan-Genomics, and Super Pan-Genomics of Major Oilseed Crops. In: Breeding Climate Resilient and Future Ready Oilseed Crops. Springer, Singapore, pp. 7-41. ISBN 978-981-97-7743-3

Pandey, M K and Mallikarjuna, M G and Lohithaswa, H C and Aski, M S and Gupta, Sanjeev (2025) Introduction: Breeding Climate-Resilient and Future Ready Oilseed Crops. In: Breeding Climate Resilient and Future Ready Oilseed Crops. Springer, Singapore, pp. 1-6. ISBN 978-981-97-7744-0

Sangh, C and Mallikarjuna, M G and Pandey, M K and Mondal, T K and Radhakrishnan, T and Tomar, R S and Gajera, H P and Bera, S K (2025) Breeding Climate-Resilient Groundnut in the Climate Change Era: Current Breeding Strategies and Prospects. In: Breeding Climate Resilient and Future Ready Oilseed Crops. Springer, Singapore, pp. 265-301. ISBN 978-981-97-7743-3

Satyavathi, C T and Ambawat, S and Lata, C and Shivhare, R and Kapoor, C and Sankar, S M and Gobu, R and Soumya, S L and Siddaiah, C N and Srivastava, R K (2024) Allele Mining for Genome Designing in Pearl Millet. In: Allele Mining for Genomic Designing of Cereal Crops. CRC Press, Boca Raton, pp. 210-238. ISBN 9781003385004

Satyavathi, C T and Sankar, S M and Singh, S P and Kapoor, C and Soumya, S L and Ambawat, S and Khandelwal, V and Srivastava, R K and Gobu, R (2024) Breeding Climate Resilient Pearl Millet Cultivars for India. In: The Pearl Millet Genome. Compendium of Plant Genomes, 1 (1). Springer, Cham, Switzerland AG, pp. 31-55. ISBN 978-3-031-56976-0

Supritha, D S R and Swaroop, K O and Shreeraksha, R J and Nandigavi, V S and Akshitha, N Y and Kiranakumara, D M and Gangashetty, P I and Aski, M S and Thudi, M and Patil, B S and Kudapa, H and Chellapilla, B and Varshney, R K and Nayak, S N (2025) Global Status of Genetic, Genomic, and Bioinformatics Resources for Pulse Crop Improvement. In: Breeding Climate Resilient and Future Ready Pulse Crops. Springer, Singapore, pp. 71-129. ISBN 978-981-96-0482-1

Article

Ashajyothi, M and Balamurugan, A and Shashikumara, P and Pandey, N and Agarwal, D K and Tarasatyavati, C C and Varshney, R K and Nayaka, S C (2021) First Report of Pearl Millet Bacterial Leaf Blight Caused by Pantoea stewartii Subspecies indologenes in India. Plant Disease (TSI), 105 (11). p. 3736. ISSN 0191-2917

Chandana, B S and Mahto, R K and Singh, R K and Bhandari, A and Tandon, G and Singh, K K and Kushwah, S and Lavanya, G R and Iquebal, M A and Jain, N and Kudapa, H and Upadhyaya, H D and Hamwieh, A and Kumar, Rajendra (2024) Genome-wide association mapping identifies novel SNPs for root nodulation and agronomic traits in chickpea. Frontiers in Plant Science (TSI), 15. pp. 1-19. ISSN 1664-462X

Chandana, B S and Mahto, R K and Singh, R K and Ramachandra, V and Singh, K K and Kushwah, S and Lavanya, G R and Kudapa, H and Valluri, V K and Vemula, A K and Yadav, R R and Yadav, L B and Upadhyaya, H D and Hamwieh, A and Kumar, Rajendra (2025) Genome wide association study (GWAS) identified novel SNPs associated to efficient biological nitrogen fixation in chickpea (Cicer arietinum L.). Frontiers in Plant Science (TSI). ISSN 1664-462X (Submitted)

Chandana, B S and Mahto, R K and Singh, R K and Ramachandra, V and Singh, K K and Kushwah, S and Lavanya, G R and Kudapa, H and Valluri, V K and Vemula, A K and Yadav, R R and Yadav, L B and Upadhyaya, H D and Hamwieh, A and Kumar, Rajendra (2025) Genome-wide association studies identified novel SNPs associated with efficient biological nitrogen fixation in chickpea (Cicer arietinum L.). Frontiers in Plant Science (TSI), 16. pp. 01-17. ISSN 1664-462X

Das, T K and Behera, B and Nath, C P and Ghosh, S and Sen, S and Raj, R and Ghosh, S and Sharma, A R and Yaduraju, N T and Nalia, A and Dutta, A and Kumar, Narendra and Singh, Raghavendra and Pathak, H and Singh, R G and Hazra, K K and Ghosh, P K and Layek, J and Patra, A and Paramanik, B (2024) Herbicides use in crop production: An analysis of cost-benefit, non-target toxicities and environmental risks. Crop Protection (TSI), 181. ISSN 0261-2194

Debnath, M and Chatterjee, S and Nayak, A K and Chakraborty, D and Pathak, H (2025) Water Use in Rice Crop Cultivation in India: A Quantitative Assessment. Agricultural Research. pp. 1-13. ISSN 2249-720X

Dhillon, M K and Jaba, J and Mishra, P and Iquebal, M A and Jaiswal, S and Tanwar, A K and Bharat, N and Arora, N and Mishra, S P and Gogineni, S P and Hasan, F and Rai, A and Kumar, D and Sharma, H C (2022) Whole genome sequencing of spotted stem borer, Chilo partellus, reveals multiple genes encoding enzymes for detoxification of insecticides. Functional & Integrative Genomics, 22. pp. 611-624. ISSN 1438-7948

Garg, V and Barmukh, R and Chitikineni, A and Roorkiwal, M and Ojiewo, C and Bohra, A and Thudi, M and Singh, V K and Kudapa, H and Saxena, R K and Fountain, J and Mir, R R and Bharadwaj, C and Chen, X and Xin, L and Pandey, M K (2024) Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society. Plant Biotechnology Journal. pp. 1-12. ISSN 1467-7652

Ghosh, A and Singh, A K and Kumar, Sunil and Manna, M C and Jha, P and Bhattacharyya, R and Sannagoudar, M S and Singh, R and Chaudhari, S K and Kumar, R V (2021) Do moisture conservation practices influence stability of soil organic carbon and structure? CATENA (TSI), 199. ISSN 0341-8162

Gireesh, C and Sundarama, R M and Anantha, S M and Pandey, M K and Madhav, M S and Rathod, S and Yathish, K R and Senguttuvel, P and Kalyani, B M and Ranjith, E and Subbarao, L V and Mondal, T K and Swamy, M and Rakshit, S (2021) Nested Association Mapping (NAM) Populations: Present Status and Future Prospects in the Genomics Era. Critical Reviews in Plant Sciences, 40. pp. 49-67. ISSN 0735-2689

Gothe, R M and Karrem, A and Gowda, R S R and Onkarappa, D and Jaba, J and Ahn, S and Pathour, S and Yogendra, K and Bheemanahalli, R (2024) Decoding plant defense: accelerating insect pest resistance with omics and high-throughput phenotyping. Plant Physiology Reports, 29. pp. 793-807. ISSN 2662-253X

Jagadhesan, B and Meena, H S and Jha, S K and Krishna, K G and Kumar, Santosh and Elangovan, A and Chinnusamy, V and Kumar, A and Sathee, L (2024) Association of nitrogen utilisation efficiency with sustenance of reproductive stage nitrogen assimilation, transcript abundance and sequence variation of nitrogen metabolism genes in rice (Oryza sativa L.) sub-species. Plant Physiology Reports, 29. pp. 931-947. ISSN 2662-253X

Kashyap, G S S and Lohithaswa, H C and Banakara, S and Sowmya, M S and Padmaja, A S and Keshavareddy, G and Mallikarjuna, M G and Gangashetty, P I (2023) Identification of sources of resistance to Fusarium wilt and sterility mosaic diseases in pigeonpea [Cajanus cajan (L.) Millsp.]. Indian Journal of Genetics and Plant Breeding (TSI), 83 (2). pp. 278-281. ISSN 0975-6906

Kumar, Kamlesh and Parihar, C M and Nayak, H S and Sena, D R and Godara, S and Dhakar, R and Patra, K and Sarkar, A and Bharadwaj, S and Ghasal, P C and Meena, A L and Reddy, K S and Das, T K and Jat, S L and Sharma, D K and Saharawat, Y S and Singh, Upendra and Jat, M L and Gathala, M K (2024) Modeling maize growth and nitrogen dynamics using CERES-Maize (DSSAT) under diverse nitrogen management options in a conservation agriculture-based maize-wheat system. Scientific Reports (TSI), 14. pp. 1-18. ISSN 2045-2322

Kumar, N and Bharadwaj, C and Sahu, S and Shiv, A and Shrivastava, A K and Reddy, S P P and Soren, K R and Patil, B S and Pal, M and Soni, A and Roorkiwal, M and Varshney, R K (2021) Genome-wide identification and functional prediction of salt- stress related long non-coding RNAs (lncRNAs) in chickpea (Cicer arietinum L.). Physiology and Molecular Biology of Plants (TSI), 27. pp. 2605-2619. ISSN 0971-5894

Kumar, N and Bharadwaj, C and Soren, K R and Meena, M C and Sneha Priya, P R and Joshi, N and Soni, A and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2021) Response of shoot ionic (Na+/K+) distribution on yield and agro-physiological traits in chickpea (Cicer arietinum L.) recombinant inbred lines population under salinity. Indian Journal of Genetics and Plant Breeding, 81 (4). pp. 590-593. ISSN 0975-6906

Kumar, Ramesh and Kumar, Chavlesh and Choudhury, D R and Ranjan, A and Raipuria, R K and Dubey, K K D and Mishra, A and Kumar, Chetan and Manzoor, M M and Kumar, Ashok and Kumari, A and Singh, K and Singh, G P and Singh, Rakesh (2024) Isolation, Characterization, and Expression Analysis of NAC Transcription Factor from Andrographis paniculata (Burm. f.) Nees and Their Role in Andrographolide Production. Genes (TSI), 15 (4). pp. 1-22. ISSN 2073-4425

Kushwah, A and Bhatia, D and Barmukh, R and Singh, I and Singh, G and Bindra, S and Vij, S and Chellapilla, B and Pratap, A and Roorkiwal, M and Kumar, S and Varshney, R K and Singh, S (2022) Genetic mapping of QTLs for drought tolerance in chickpea (Cicer arietinum L.). Frontiers in Genetics (TSI), 13. pp. 01-15. ISSN 1664-8021

Layek, J and Rangappa, K and Das, A and Ansari, M A and Choudhary, S and Rajbonshi, N and Patra, S and Kumar, A and Mishra, V K and Ravisankar, N and Kumar, S and Hazarika, S and Dutta, S K and Babu, S and Tahasildar, M and Shettigar, N (2023) Evaluation of millets for physio-chemical and root morphological traits suitable for resilient farming and nutritional security in Eastern Himalayas. Frontiers in Nutrition (TSI), 10. pp. 01-17. ISSN 2296-861X

Madhuri, E V and Rupali, J S and Sharan, S P and Pooja, N S and Sujatha, G S and Singh, D P and Ahmad, K and Kumar, Amrender and Prabha, R (2025) Transforming Pest Management with Artificial Intelligence Technologies: The Future of Crop Protection. Journal of Crop Health, 77. pp. 1-17. ISSN 2948-264X

Mallikarjuna, M G and Pandey, M K and Sharma, R and Clevenger, J and Bhattacharya, S (2023) Editorial: Application of network-theoretic approaches in biology. Frontiers in Genetics (TSI), 14. pp. 01-03. ISSN 1664-8021

Manjunatha, L and Basavaraja, T and Manjunatha, N and Srinivasa, N and Kumar, Vijay and Chandora, R and Singh, M and Singh, N P (2021) Identification of stable resistant donors against necrosis inducing strain of bean common mosaic virus in common bean (Phaseolus vulgaris L.). Archives of Phytopathology and Plant Protection, 54 (15-16). pp. 1033-1046. ISSN 0323-5408

Naik, Y D and Sharma, V K and Aski, M S and Rangari, S K and Kumar, Raj and Dikshit, H K and Sangita, S and Kant, R and Mishra, G and Mir, R R and Kudapa, H and Elango, D and Zwart, R S and Varshney, R K and Thudi, M (2024) Phenotypic profiling of lentil (Lens culinaris Medikus) accessions enabled identification of promising lines for use in breeding for high yield, early flowering and desirable traits. Plant Genetic Resources: Characterization and Utilization, 22 (2). pp. 69-77. ISSN 1479-2621

Naik, Y D and Sharma, V K and Aski, M S and Shivaprasad, K M and Jadhav, M P and Sriswathi, M and Odeny, D A and Anjani, K and Punnuri, S and Varshney, R K and Kudapa, H and Thudi, M (2026) Genomic dissection of phenological and yield-associated traits in lentil (Lens culinaris Medik.) using genome-wide association mapping. Physiology and Molecular Biology of Plants, 32. pp. 839-855. ISSN 0971-5894

Nayak, H S and Silva, J V and Parihar, C M and Jat, M L and Singh, Rajbir and Kumar, Rakesh and Sena, D R and Jat, H S and Sidhu, H S and Krupnik, T J and Sapkota, T B (2025) Ensuring sustainable crop production when yield gaps are small: A data-driven integrated assessment for wheat farms in Northwest India. European Journal of Agronomy (TSI), 164. pp. 1-13. ISSN 1161-0301

Padhan, B K and Sathee, L and Kumar, S and Chinnusamy, V and Kumar, A (2023) Variation in nitrogen partitioning and reproductive stage nitrogen remobilization determines nitrogen grain production efficiency (NUEg) in diverse rice genotypes under varying nitrogen supply. Frontiers in Plant Science (TSI), 14. pp. 01-16. ISSN 1664-462X

Padhan, B K and Sathee, L and Kumar, S and Senapati, M and Chinnusamy, V and Krishnan, S G and Kumar, D and Gupta, N C and Kumar, A (2023) Nitrogen dose dependant changes in grain morphology parameters are correlated with grain protein and yield traits in field-grown diverse rice genotypes. Plant Physiology Reports, 28. pp. 490-499. ISSN 2662-2548

Palakurthi, R and Jayalakshmi, V and Kumar, Y and Kulwal, P and Yasin, M and Kute, N S and Laxuman, C and Yeri, S and Vemula, A K and Rathore, A and Samineni, S and Soren, K R and Mondal, B and Dixit, G P and Bharadwaj, C and Chaturvedi, S K and Gaur, P M and Roorkiwal, M and Thudi, M and Singh, N P and Varshney, R K (2021) Translational Chickpea Genomics Consortium to Accelerate Genetic Gains in Chickpea (Cicer arietinum L.). Plants (TSI), 10 (12). pp. 1-13. ISSN 2223-7747

Radheshyam, - and Jat, S L and Jat, M L and Parihar, C M and Jat, H S and Singh, A K and Bijarniya, D and Padhan, S R and Kadam, P V and Kumar, M (2024) On-farm evidence on breaking yield barriers through optimizing wheat cropping system in Indo Gangetic Plain. European Journal of Agronomy (TSI), 159. pp. 1-12. ISSN 1161-0301

Radheshyam, - and Jat, S L and Singh, A K and Jat, H S and Sharma, D K and Meena, M C and Gawdiya, S and Kumar, Anup and Kumar, Rakesh and Singh, Rajbir and Jat, M L (2024) Conservation Agriculture offers system optimization for legume intensification: An on-farm study of western Indo-Gangetic Plains. Field Crops Research (TSI), 321. ISSN 0378-4290

Rangan, P and Wankhede, D P and Subramani, R and Chinnusamy, V and Pathania, P and Bartwal, A and Malik, S K and Baig, M J and Rai, A and Singh, K (2024) Rice Transcriptomics Reveal the Genetic Determinants of An In Planta Photorespiratory Bypass: a Novel Way to Increase Biomass in C3 Plants. Plant Molecular Biology Reporter (TSI). ISSN 0735-9640

Roorkiwal, M and Bhandari, A and Barmukh, R and Bajaj, P and Valluri, V K and Chitikineni, A and Pandey, S and Chellapilla, B and Siddique, K H M and Varshney, R K (2022) Genome-wide association mapping of nutritional traits for designing superior chickpea varieties. Frontiers in Plant Science (TSI), 13. pp. 01-17. ISSN 1664-462X

Sachdeva, S and Bharadwaj, C and Patil, B S and Pal, M and Roorkiwal, M and Varshney, R K (2022) Agronomic Performance of Chickpea Affected by Drought Stress at Different Growth Stages. Agronomy (TSI), 12 (5). pp. 1-26. ISSN 2073-4395

Sachin, K S and Veeranna, H K and Dass, A and Harish, M N and Bhupenchandra, I and Rajanna, G A and Sannagoudar, M S and Nithinkumar, K and Pratap, V and Niranjan, B N and Sumanth Kumar, G V and Yogi, A K and Praveen, B R and Raghavendra, H R and Kumari, K and Devika, A R and Singh, Arjun (2026) Sewage water and sludge co-implementation effects on soil properties and green chili in Typic Haplustalf of southern India. Frontiers in Agronomy, 8. pp. 01-17. ISSN 2673-3218

Sharma, S B and Raverkar, K P and Wani, S P and Bagyaraj, D J and Annapurna, K and Kandula, D R W and Mikaelyan, A and Ansari, M A and Stock, S P and Davies, K G and Sharma, R (2025) Role of the Plant–Microbiome Partnership in Environmentally Harmonious 21st Century Agriculture. Microorganisms (TSI), 13. pp. 1-29. ISSN 2076-2607

Siddesh, R and Pathak, H and Chavan, S B and Kakade, V D and Salunkhe, S S and Uthappa, A R and Paul, N and Halli, H M and Reddy, K S (2025) Estimating carbon sequestration in orchards of semi-arid tropics: A modeling approach. Biomass & Bioenergy, 206. ISSN 0961-9534

Singh, G and Krishnan, S G and Kumar, A and Vinod, K K and Bollinedi, H and Ellur, R K and Nagarajan, M and Bhowmick, P K and Madhav, S M and Singh, K and Singh, A K (2022) Molecular profiling of BADH2 locus reveals distinct functional allelic polymorphism associated with fragrance variation in Indian aromatic rice germplasm. Physiology and Molecular Biology of Plants (TSI), 28. pp. 1013-1027. ISSN 0971-5894

Singh, M K and Roorkiwal, M and Rathore, A and Soren, K R and Pithia, M S and Yasin, M and Barpete, S and Singh, S and Barmukh, R and Das, R R and Gangwar, P and Chetariya, C P and Joshi, P and Chaturvedi, S K and Javia, R M and Ramani, V V and Hamwieh, A and Kumar, S and Bharadwaj, C and Singh, N P and Varshney, R K (2022) Evaluation of Global Composite Collection Reveals Agronomically Superior Germplasm Accessions for Chickpea Improvement. Agronomy (TSI), 12 (9). pp. 1-30. ISSN 2073-4395

Singhal, P and Saini, S and Saini, O and Bishnoi, A and Rashmi, E R and Meena, B R and Singh, J and Yogendra, K (2026) Molecular gatekeepers: eukaryotic translation factors decoding plant–virus dynamics for resistance engineering. Stress Biology, 6. pp. 1-24. ISSN 2731-0450

Srinivas, K and Singh, V K and Srinivas, B and Sameriya, K K and Prasad, L and Singh, G P (2023) Determining the impact of stripe rust and leaf rust on grain yield and yield components' losses in Indian wheat cultivars. Cereal Research Communications, 13. pp. 1-14. ISSN 1788-9170

Thudi, M and Naik, Y D and Jha, U C and Sai Reddy, M S and Pandey, M K and Mir, R R and Aski, M S and Jayakodi, M and Mendu, V and Puppala, N and Vara Prasad, P V and Punnuri, S M and Nguyen, H T (2026) Cross incompatibility restricting genome exchange and diversification of primary gene pool in plants: challenges and opportunities. Theoretical and Applied Genetics, 139. pp. 1-18. ISSN 0040-5752

Vishwakarma, H and Sharma, S and Panzade, K P and Kharate, P S and Kumar, A and Singh, N and Avashthi, H and Rangan, P and Singh, A K and Singh, A and Angadi, U B and Siddique, K H M and Singh, K and Singh, G P and Pandey, R and Yadav, R (2024) Genome-wide analysis of the class III peroxidase gene family in sesame and SiPRXs gene validation by expression analysis under drought stress. Plant Stress, 11. pp. 1-13. ISSN 2667-064X

Wang, L and Upadhyaya, H D and Zheng, J and Liu, Y and Singh, S K and Gowda, C L L and Kumar, Rajendra and Zhu, Y and Wang, T and Li, J (2021) Genome-Wide Association Mapping Identifies Novel Panicle Morphology Loci and Candidate Genes in Sorghum. Plant Science (TSI), 12. pp. 1-9. ISSN 1664-462X

Yadav, R and Vishwakarma, H and Satpathy, S and Mahalingam, A and Rangan, P and Kumar, Ajay and Ali, S and Sharma, K and Kumari, K and Arya, D K and Rialch, I and Kumhar, S R and Gohil, V and Bisen, R and Pandey, R and Rai, V and Tiwari, K and Singh, A K and Angadi, U B and Vasimalla, C C and Senthilraja, G and Sharma, P and Kumar, Pradeep and Gupta, K N and Ranebennur, H and Singh, Kartar and Langyan, S and Rana, V S and Shakil, N A and Sharma, Sanjula and Singh, A and Choudhary, R and Pradheep, K and Gomashe, S S and Ramachandran, S and Singh, M and Aravind, J and Jalli, R and Kumar, Ashok and Singh, K and Singh, G P and Kalia, S and Rathore, A (2026) A multidimensional core set development of sesame germplasm leveraging agro-morphological traits diversity for genetic improvement and climate resilience. Scientific Reports, 16. pp. 1-15. ISSN 2045-2322

Yadav, R and Kalia, S and Rangan, P and Pradheep, K and Rao, G P and Kaur, V and Pandey, R and Rai, V and Vasimalla, C C and Langyan, S and Sharma, S and Thangavel, B and Rana, V S and Vishwakarma, H and Shah, A and Saxena, A and Kumar, A and Singh, K and Siddique, K H M (2022) Current Research Trends and Prospects for Yield and Quality Improvement in Sesame, an Important Oilseed Crop. Frontiers in Plant Science (TSI), 13. pp. 1-22. ISSN 1664-462X

Conference or Workshop Item

Kurella, A and Gurjar, M S and Vidyashree, L K and Sudini, H K (2025) Distribution and Risk Assessment of Aspergillus flavus Infection in Major Groundnut (Arachis hypogaea L.) Growing Regions of India. In: Advances in Arachis through Genomics and Biotechnology (AAGB-2025), 23-25 March 2025, Novotel, Goa, India.