Sharma, M and Sengupta, A and Ghosh, R and Agarwal, G and Tarafdar, A and Nagavardhini, A and Pande, S and Varshney, R K (2016) Genome wide transcriptome profiling of Fusarium oxysporum f sp. ciceris conidial germination reveals new insights into infection-related genes. Scientific Reports, 6 (37353). 01-11. ISSN 2045-2322
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Abstract
Vascular wilt caused by Fusarium oxysporum f. sp. ciceris (Foc) is a serious disease of chickpea (Cicer arietinum L.) accounting for approximately 10–15% annual crop loss. The fungus invades the plant via roots, colonizes the xylem vessels and prevents the upward translocation of water and nutrients. Infection is initiated by conidia that invade the host tissue often by penetration of intact epidermal cells. Here, we report the characterization of the transcriptome of Foc sequenced using Illumina Hiseq technology during its conidial germination at different time points. Genome-wide expression profiling revealed that genes linked to fungal development are transcribed in successive ways. Analysis showed that Foc have large sets of germination-related genes and families of genes encoding secreted effectors, cell wall/pectin-degrading enzymes, metabolism related enzymes, transporters and peptidases. We found that metabolism related enzymes are up-regulated at early time point whereas most transporters and secondary metabolites important for tissue colonization and pathogenicity are up-regulated later as evident from the qRT-PCR. The study demonstrated that early conidial germination in Foc is accompanied by rapid shifts in gene expression that prepare the fungus for germ tube outgrowth, host cell invasion and pathogenesis. This work lays the foundation for facilitating further research towards understanding this host-pathogen interaction.
| Item Type: | Article |
|---|---|
| Divisions: | Research Program : Asia |
| CRP: | CGIAR Research Program on Grain Legumes |
| Uncontrolled Keywords: | Fusarium wilt, Germination, Fusarium oxysporum |
| Subjects: | Others > Genetics and Genomics Others > Plant Pathology |
| Depositing User: | Mr Ramesh K |
| Date Deposited: | 18 Nov 2016 10:51 |
| Last Modified: | 21 Nov 2016 03:58 |
| URI: | http://oar.icrisat.org/id/eprint/9789 |
| Official URL: | http://dx.doi.org/10.1038/srep37353 |
| Projects: | UNSPECIFIED |
| Funders: | DST-Climate Change Program |
| Acknowledgement: | This work was undertaken as part of the CGIAR Research Program on Grain Legumes. The partial funding support from Department of Science and Technology, Climate Change Division Govt of India is gratefully acknowledged. |
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