Fernandez, C G T and Bayer, P E and Petereit, J and Varshney, R K and Batley, J and Edwards, D (2023) The conservation of gene models can support genome annotation. The Plant Genome (TSI), 16 (3). pp. 1-7. ISSN 1940-3372
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Abstract
Many genome annotations include false-positive gene models, leading to errors in phylogenetic and comparative studies. Here, we propose a method to support gene model prediction based on evolutionary conservation and use it to identify potentially erroneous annotations. Using this method, we developed a set of 15,345 representative gene models from 12 legume assemblies that can be used to support genome annotations for other legumes.
| Item Type: | Article |
|---|---|
| Divisions: | Center of Excellence in Genomics and Systems Biology |
| CRP: | UNSPECIFIED |
| Uncontrolled Keywords: | conservation of gene models, genome annotation, phylogenetic, |
| Subjects: | Others > Genetic Engineering Others > Genetics and Genomics Others > Legume Crops |
| Depositing User: | Mr Nagaraju T |
| Date Deposited: | 04 Jan 2024 05:08 |
| Last Modified: | 04 Jan 2024 05:08 |
| URI: | http://oar.icrisat.org/id/eprint/12338 |
| Official URL: | https://acsess.onlinelibrary.wiley.com/doi/full/10... |
| Projects: | Grant/Award Numbers: DP200100762, DP210100296 |
| Funders: | Australian Research Council |
| Acknowledgement: | This work is funded by the Australia Research Council (Projects DP210100296, DP200100762, and DE210100398). This work was supported by resources provided by the Pawsey Supercomputing Centre with funding from the Australian Government and the Government of Western Australia. |
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