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Ramu, P and Deshpande, S P and Senthilvel, S and Jayashree, B and Billot, C and Deu, M and Reddy, L A and Hash, C T (2010) In silico mapping of important genes and markers available in the public domain for efficient sorghum breeding. Molecular Breeding, 26. pp. 409-418.
Raju, N K and Gnanesh, B N and Pazhamala, L T and Jayashree, B and Pande, S and Hiremath, P J and Byregowda, M and Singh, N K and Varshney, R K (2010) The first set of EST resource for gene discoveryand marker development in pigeonpea(Cajanus cajan L.). BMC Plant Biology, 10. pp. 45-66. ISSN 14712229
Ramu, P and Kassahun, B and Senthilvel, S and Ashok Kumar, C and Jayashree, B and Folkertsma, R T and Reddy, L A and Kuruvinashetti, M S and Haussmann, B I G and Hash, C T (2009) Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map. TAG Theoretical and Applied Genetics, 119 (7). pp. 1193-1204.
Ramu, P and Kassahun, B and Senthilvel, S and Ashok Kumar, C and Jayashree, B and Folkertsma, R T and Ananda Reddy, L and Kuruvinashetti, M S and Haussmann, B I G and Hash, C T (2009) Exploiting rice–sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map. Theoretical and Applied Genetics, 119 (7). pp. 1193-1204. ISSN 0040-5752
Odeny, D A and Jayashree, B and Gebhardt, C and Crouch, J (2009) New microsatellite markers for pigeonpea (cajanus cajan (L.) millsp.). BMC Research Notes, 2 (35). pp. 1-5.
Jayashree, B and Prakash, A B and Jami, A and Reddy, P S and Nayak, S N and Varshney, R K (2009) Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes, 2. pp. 1-5.
Varshney, R K and Hiremath, P J and Pazhamala, L T and Kashiwagi, J and Jayashree, B and Deokar, A A and Vadez, V and Xiao, Y and Srinivasan, R and Gaur, P M and Siddique, K H M and Town, C D and Hoisington, D A (2009) A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics, 10 (523). 18p. ISSN 1471-2164
Jayashree, B and Jagadeesh, V T and Hoisington, D A (2008) CISprimerTOOL: software to implement a comparative genomics strategy for the development of conserved intron scanning (CIS) markers. Molecular Ecology Resources, 8 (3). pp. 575-577. ISSN 1755-0998
Senthilvel, S and Jayashree, B and Mahalakshmi, V and Sathish Kumar, P and Nakka, S and Nepolean, T and Hash, C T (2008) Development and mapping of simple sequence repeat markers for pearl millet from data mining of expressed sequence tags. BMC Plant Biology, 8 (119). 9pp.
Jayashree, B and Rajagopal, S. and Hoisington, D A and Prasanth, V. P. and Chandra, S. (2008) WebStruct and VisualStruct: web interfaces and visualization for Structure software implemented in a cluster environment. Journal of Integrative Bioinformatics, 5. pp. 1-5. ISSN 1613-4516
Varshney, R K and Nayak, S N and Jayashree, B and Eshwar, K and Upadhyaya, H D and Hoisington, D A (2007) Development of cost-effective SNP assays for chickpea genome analysis and breeding. Journal of SAT Agricultural Research, 3 (1). pp. 1-3. ISSN 0973-3094
Odeny, D A and Jayashree, B and Ferguson, M and Hoisington, D A and Crouch, J H and Gebhard, C (2007) Development, characterization and utilization of microsatellite markers in pigeonpea. Plant Breeding, 126 (2). pp. 130-136.
Varshney, R K and Horres, R and Molina, C and Nayak, S N and Jungmann, R and Swamy, P and Winter, P and Jayashree, B and Kahl, G and Hoisington, D A (2007) Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of SAT Agricultural Research, 5 (1). pp. 1-3. ISSN 0973-3094
Jayashree, B and Hanspal, M S and Srinivasan, R and Vigneshwaran, R and Varshney, R K and Spurthi, N and Eshwar, K and Ramesh, N and Chandra, S and Hoisington, D A (2007) An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms. Comparative and Functional Genomics (35604). pp. 1-7. ISSN 1531-6912
Jayashree, B and Ramu, P and Prasad, P and Bantte, K and Hash, C T and Chandra, S and Hoisington, D A and Varshney, R K (2006) A Database of Simple Sequence Repeats from Cereal and Legume Expressed Sequence Tags Mined in silico: Survey and Evaluation. In Silico Biology, 6 (6). pp. 607-620. ISSN 1434-3207
Jayashree, B and Reddy, P T and Leeladevi, Y and Crouch, J H and Mahalakshmi, V and Buhariwalla, H K and Eshwar, K E and Mace, E and Folksterma, R and Senthilvel, S and Varshney, R K and Seetha, K and Rajalakshmi, R and Prasanth, V P and Chandra, S and Swarupa, L and SriKalyani, P and Hoisington, D A (2006) Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping. BMC Bioinformatics, 7 (383). ISSN 1471-2105
Buhariwalla, H K and Jayashree, B and Eshwar, K and Crouch, J H (2005) Development of ESTs from chickpea roots and their use in diversity analysis of the Cicergenus. BMC Plant Biology, 5 (16). 01-14. ISSN 14712229
Jayashree, B and Ferguson, M and Ilut, D and Doyle, J and Crouch, J H (2005) Analysis of genomic sequences from peanut (Arachis hypogaea). Electronic Journal of Biotechnology, 8 (3). pp. 226-237. ISSN 0717-3458
Buhariwalla, H K and Jarret, R L and Jayashree, B and Crouch, J H and Ortiz, R (2005) Isolation and characterization of microsatellite markers from Musa balbisiana. Molecular Ecology Notes, 5 (2). pp. 327-330. ISSN 1471-8278
Jayashree, B and Buhariwalla, H K and Shinde, S and Crouch, J H (2005) A legume genomics resource: The Chickpea Root Expressed Sequence Tag Database. Electronic Journal of Biotechnology, 8 (2). pp. 128-133. ISSN 0717-3458
Jayashree, B and Hoisington, D (2009) Bioinformatics tools for crop research and breeding. In: Bioinformatics tools for crop research and breeding. 2 edn, 9 (1). Springer, Netherlands, pp. 97-116. ISBN 978-90-481-2966-9
Jayashree, B and Chandra, S and Hoisington, D A and Upadhyaya, H D and Hash, C T and Vadez, V and Varshney, R K and Senthilvel, S (2007) Bioinformatics platform for ICRISAT's global research needs. Documentation. International Crops Research Institute for Semi-Arid Tropics, Patancheru, Andhra Pradesh India. (Unpublished)