eprintid: 9294
rev_number: 23
eprint_status: archive
userid: 17
dir: disk0/00/00/92/94
datestamp: 2016-02-05 04:40:50
lastmod: 2019-03-21 09:36:39
status_changed: 2016-02-05 04:40:50
type: article
metadata_visibility: show
contact_email: Library-ICRISAT@CGIAR.ORG
creators_name: Kang, Y J
creators_name: Satyawan, D
creators_name: Shim, S
creators_name: Lee, T
creators_name: Lee, J
creators_name: Hwang, W J
creators_name: Kim, S K
creators_name: Lestari, P
creators_name: Laosatit, K
creators_name: Kim, K H
creators_name: Ha, T J
creators_name: Chitikineni, A
creators_name: Kim, M Y
creators_name: Ko, J M
creators_name: Gwag, J G
creators_name: Moon, J K
creators_name: Lee, Y H
creators_name: Park, B S
creators_name: Varshney, R K
creators_name: Lee, S H
icrisatcreators_name: Chitikineni, A
icrisatcreators_name: Varshney, R K
affiliation: Seoul National University (Seoul)
affiliation: ICABIOGRAD-IAARD (Jalan Tentara Pelajar)
affiliation: Kasetsart University (Kamphaeng Saen)
affiliation: National Institute of Crop Science (Suwon)
affiliation: Research Policy Bureau, R&D Performance Evaluation & Management Division (Wansan-gu)
affiliation: ICRISAT (Patancheru)
affiliation: Legume & Oil Crop Research Division (Gyeongnamdo)
affiliation: National Agrobiodiversity Center of NAAS, RDA (Suwon)
affiliation: Agricultural Genome Center, National Academy of Agricultural Science (Suwon)
affiliation: Plant Genomics and Breeding Institute, Seoul National University (Seoul)
country: Korea
country: Indonesia
country: Thailand
country: India
title: Draft genome sequence of adzuki bean, Vigna angularis
ispublished: pub
subjects: s2.13
divisions: D3
crps: crp1.5
full_text_status: restricted
keywords: Vigna angularis var. angularis, Legume crop, Adzuki bean
abstract: Adzuki bean (Vigna angularis var. angularis) is a dietary legume crop in East Asia. The presumed progenitor (Vigna angularis var. nipponensis) is widely found in East Asia, suggesting speciation and domestication in these temperate climate regions. Here, we report a draft genome sequence of adzuki bean. The genome assembly covers 75% of the estimated genome and was mapped to 11 pseudo-chromosomes. Gene prediction revealed 26,857 high confidence protein-coding genes evidenced by RNAseq of different tissues. Comparative gene expression analysis with V. radiata showed that the tissue specificity of orthologous genes was highly conserved. Additional re-sequencing of wild adzuki bean, V. angularis var. nipponensis, and V. nepalensis, was performed to analyze the variations between cultivated and wild adzuki bean. The determined divergence time of adzuki bean and the wild species predated archaeology-based domestication time. The present genome assembly will accelerate the genomics-assisted breeding of adzuki bean.
date: 2015
publication: Scientific Reports
volume: 5
number: 8069
pagerange: 1-8
refereed: TRUE
issn: 2045-2322
official_url: http://dx.doi.org/10.1038/srep08069
related_url_url: http://scholar.google.co.in/scholar?as_q=Draft+genome+sequence+of+adzuki+bean%2C+Vigna+angularis&as_epq=&as_oq=&as_eq=&as_occt=title&as_sauthors=&as_publication=&as_ylo=&as_yhi=&btnG=&hl=en&as_sdt=0%2C5
related_url_type: pub
citation:   Kang, Y J and Satyawan, D and Shim, S and Lee, T and Lee, J and Hwang, W J and Kim, S K and Lestari, P and Laosatit, K and Kim, K H and Ha, T J and Chitikineni, A and Kim, M Y and Ko, J M and Gwag, J G and Moon, J K and Lee, Y H and Park, B S and Varshney, R K and Lee, S H  (2015) Draft genome sequence of adzuki bean, Vigna angularis.  Scientific Reports, 5 (8069).  pp. 1-8.  ISSN 2045-2322     
document_url: http://oar.icrisat.org/9294/1/ScientificRep_2015.pdf