<> "The repository administrator has not yet configured an RDF license."^^ . <> . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea"^^ . "We identified 44844 high-quality SNPs by sequencing 92 diverse chickpea accessions belonging to a seed and pod trait-specific association panel using reference genome- and de novo-based GBS (genotyping-by-sequencing) assays. A GWAS (genome-wide association study) in an association panel of 211, including the 92 sequenced accessions, identified 22 major genomic loci showing significant association (explaining 23–47% phenotypic variation) with pod and seed number/plant and 100-seed weight. Eighteen trait-regulatory major genomic loci underlying 13 robust QTLs were validated and mapped on an intra-specific genetic linkage map by QTL mapping. A combinatorial approach of GWAS, QTL mapping and gene haplotype-specific LD mapping and transcript profiling uncovered one superior haplotype and favourable natural allelic variants in the upstream regulatory region of a CesA-type cellulose synthase (Ca_Kabuli_CesA3) gene regulating high pod and seed number/plant (explaining 47% phenotypic variation) in chickpea. The up-regulation of this superior gene haplotype correlated with increased transcript expression of Ca_Kabuli_CesA3 gene in the pollen and pod of high pod/seed number accession, resulting in higher cellulose accumulation for normal pollen and pollen tube growth. A rapid combinatorial genome-wide SNP genotyping-based approach has potential to dissect complex quantitative agronomic traits and delineate trait-regulatory genomic loci (candidate genes) for genetic enhancement in crop plants, including chickpea."^^ . "2015" . . "5" . "11166" . . "Nature"^^ . . . "Nature Scientific Reports"^^ . . . "20452322" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "S"^^ . "Badoni"^^ . "S Badoni"^^ . . "H D"^^ . "Upadhyaya"^^ . "H D Upadhyaya"^^ . . "D"^^ . "Bajaj"^^ . "D Bajaj"^^ . . "R"^^ . "Ranjan"^^ . "R Ranjan"^^ . . "S"^^ . "Das"^^ . "S Das"^^ . . "A K"^^ . "Tyagi"^^ . "A K Tyagi"^^ . . "C L L"^^ . "Gowda"^^ . "C L L Gowda"^^ . . "S K"^^ . "Parida"^^ . "S K Parida"^^ . . "S"^^ . "Tripathi"^^ . "S Tripathi"^^ . . "V"^^ . "Kumar"^^ . "V Kumar"^^ . . "M S"^^ . "Saxena"^^ . "M S Saxena"^^ . . "S"^^ . "Singh"^^ . "S Singh"^^ . . "A"^^ . "Kujur"^^ . "A Kujur"^^ . . "S"^^ . "Sharma"^^ . "S Sharma"^^ . . "T"^^ . "Shree"^^ . "T Shree"^^ . . . . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea (PDF)"^^ . . . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea.pdf"^^ . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea (Other)"^^ . . . . . . "lightbox.jpg"^^ . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea (Other)"^^ . . . . . . "preview.jpg"^^ . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea (Other)"^^ . . . . . . "medium.jpg"^^ . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea (Other)"^^ . . . . . . "small.jpg"^^ . . . "A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea (Other)"^^ . . . . . . "indexcodes.txt"^^ . . "HTML Summary of #8784 \n\nA genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea\n\n" . "text/html" . . . "Chickpea"@en . .