@prefix ep: .
@prefix rdfs: .
@prefix foaf: .
@prefix bibo: .
@prefix eprel: .
@prefix event: .
@prefix owl: .
@prefix cc: .
@prefix void: .
@prefix dc: .
@prefix epid: .
@prefix rdf: .
@prefix dct: .
@prefix geo: .
@prefix xsd: .
@prefix skos: .
<>
foaf:primaryTopic ;
rdfs:comment "The repository administrator has not yet configured an RDF license."^^xsd:string .
rdfs:label "g3.120.401405.full.pdf"^^xsd:string .
rdfs:label "indexcodes.txt"^^xsd:string .
dc:format "text/html";
dc:title "HTML Summary of #11591 \n\nTwo New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production\n\n";
foaf:primaryTopic .
dct:hasPart ;
ep:hasFile ;
rdf:type bibo:Document,
ep:Document;
rdfs:label "Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production (PDF)"^^xsd:string .
dct:hasPart ;
ep:hasFile ;
eprel:isIndexCodesVersionOf ;
eprel:isVersionOf ;
eprel:isVolatileVersionOf ;
rdf:type ep:Document;
rdfs:label "Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production (Other)"^^xsd:string .
rdf:_1 ;
rdf:_2 ;
rdf:_3 ;
rdf:_4 ;
rdf:_5 ;
rdf:_6 ;
rdf:_7 ;
rdf:_8 ;
rdf:_9 ;
rdf:_10 ;
rdf:_11 ;
rdf:_12 ;
rdf:_13 ;
rdf:_14 ;
rdf:_15 ;
rdf:_16 ;
rdf:_17 ;
rdf:_18 ;
rdf:_19 ;
rdf:_20 ;
rdf:_21 .
bibo:abstract "Efforts in genome sequencing in the Aspergillus genus have led to the development of quality\r\nreference genomes for several important species including A. nidulans, A. fumigatus, and A.\r\noryzae. However, less progress has been made for A. flavus. As part of the effort of the USDA ARS Annual Aflatoxin Workshop Fungal Genome Project, the isolate NRRL3357 was sequenced and resulted in a scaffold-level genome released in 2005. Our goal has been biologically driven, focusing on two areas: isolate variation in aflatoxin production and drought stress exacerbating aflatoxin production by A. flavus. Therefore, we developed two reference pseudomolecule genome assemblies derived from chromosome arms for two isolates: AF13, a MAT1-2, highly stress tolerant, and highly aflatoxigenic isolate; and NRRL3357, a MAT1-1, less stress tolerant, and moderate aflatoxin producer in comparison to AF13. Here, we report these two reference grade assemblies for these isolates through a combination of PacBio long-read sequencing and optical mapping, and coupled them with comparative, functional, and phylogenetic analyses. This analysis resulted in the identification of 153 and 45 unique genes in AF13 and NRRL3357, respectively. We also confirmed the presence of a unique 310 Kb insertion in AF13 containing 58 genes. Analysis of this insertion revealed the presence of a bZIP transcription factor, named atfC, which may contribute to isolate pathogenicity and stress tolerance. Phylogenomic analyses comparing these and other available assemblies also suggest that the species complex of A. flavus is polyphyletic."^^xsd:string;
bibo:authorList ;
bibo:issue "9";
bibo:status ,
;
bibo:volume "10";
dc:hasVersion ;
dct:creator ,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
;
dct:date "2020-09";
dct:isPartOf ,
;
dct:publisher ;
dct:subject ,
;
dct:title "Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production"^^xsd:string;
ep:hasDocument ,
;
ep:hasPublished ;
owl:sameAs ;
rdf:type bibo:AcademicArticle,
bibo:Article,
ep:ArticleEPrint,
ep:EPrint;
rdfs:seeAlso .
rdf:type skos:Concept;
skos:prefLabel "Genetics and Genomics"@en .
rdf:type skos:Concept;
skos:prefLabel "Aflatoxins"@en .
foaf:name "Genetics Society of America"^^xsd:string;
rdf:type foaf:Organization .
foaf:familyName "Guo"^^xsd:string;
foaf:givenName "B"^^xsd:string;
foaf:name "B Guo"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Wiggins"^^xsd:string;
foaf:givenName "R"^^xsd:string;
foaf:name "R Wiggins"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Starr"^^xsd:string;
foaf:givenName "D"^^xsd:string;
foaf:name "D Starr"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Wang"^^xsd:string;
foaf:givenName "H"^^xsd:string;
foaf:name "H Wang"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Vaughn"^^xsd:string;
foaf:givenName "J N"^^xsd:string;
foaf:name "J N Vaughn"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Isett"^^xsd:string;
foaf:givenName "B"^^xsd:string;
foaf:name "B Isett"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Ozias-Akins"^^xsd:string;
foaf:givenName "P"^^xsd:string;
foaf:name "P Ozias-Akins"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Korani"^^xsd:string;
foaf:givenName "W"^^xsd:string;
foaf:name "W Korani"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Chang"^^xsd:string;
foaf:givenName "P K"^^xsd:string;
foaf:name "P K Chang"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Fountain"^^xsd:string;
foaf:givenName "J C"^^xsd:string;
foaf:name "J C Fountain"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Johnston"^^xsd:string;
foaf:givenName "H R"^^xsd:string;
foaf:name "H R Johnston"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Bhatnagar"^^xsd:string;
foaf:givenName "D"^^xsd:string;
foaf:name "D Bhatnagar"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Varshney"^^xsd:string;
foaf:givenName "R K"^^xsd:string;
foaf:name "R K Varshney"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Chu"^^xsd:string;
foaf:givenName "Y"^^xsd:string;
foaf:name "Y Chu"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Nadon"^^xsd:string;
foaf:givenName "B"^^xsd:string;
foaf:name "B Nadon"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Clevenger"^^xsd:string;
foaf:givenName "J P"^^xsd:string;
foaf:name "J P Clevenger"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Kemerait"^^xsd:string;
foaf:givenName "R C"^^xsd:string;
foaf:name "R C Kemerait"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Youngblood"^^xsd:string;
foaf:givenName "R C"^^xsd:string;
foaf:name "R C Youngblood"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Sheffler"^^xsd:string;
foaf:givenName "B E"^^xsd:string;
foaf:name "B E Sheffler"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Pandey"^^xsd:string;
foaf:givenName "M K"^^xsd:string;
foaf:name "M K Pandey"^^xsd:string;
rdf:type foaf:Person .
foaf:familyName "Agarwal"^^xsd:string;
foaf:givenName "G"^^xsd:string;
foaf:name "G Agarwal"^^xsd:string;
rdf:type foaf:Person .
bibo:issn "21601836";
foaf:name "G3: Genes | Genomes | Genetics (G3) (TSI)"^^xsd:string;
owl:sameAs ;
rdf:type bibo:Collection .