"11571","21","archive","3170",,,"disk0/00/01/15/71","2020-08-29 16:38:55","2021-02-08 05:13:54","2020-08-29 16:38:55","article",,,"show",,,,"","","","","","","","","","",,,,"Raubach","S","","","","","",,"Sharma","S","","","","",,,,,"","",,,,,"","","Department of Information and Computational Sciences, The James Hutton Institute, Errol Road, Invergowrie, Dundee","Scotland","From bits to bites: Advancement of the Germinate platform to support prebreeding informatics for crop wild relatives","pub","PLB1","CRPS5","CG1","public",,,"Plant Breeding, Germinate, Data resources",,,"Management and distribution of experimental data from prebreeding projects
is important to ensure uptake of germplasm into breeding and research programs.
Being able to access and share this data in standard formats is essential.
The adoption of a common informatics platform for crops that may have limited
resources brings economies of scale, allowing common informatics components
to be used across multiple species. The close integration of such a platform with
commonly used breeding software, visualization, and analysis tools reduces the
barrier for entry to researchers and provides a common framework to facilitate
collaborations and data sharing. This work presents significant updates to the
Germinate platform and highlights its value in distributing prebreeding data for
14 crops as part of the project ‘Adapting Agriculture to Climate Change: Collecting,
Protecting and Preparing Crop Wild Relatives’ (hereafter Crop Trust Crop
Wild Relatives project) led by the Crop Trust (https://www.cwrdiversity.org). The
addition of data on these species compliments data already publicly available in
Germinate. We present a suite of updated Germinate features using examples
from these crop species and their wild relatives. The use of Germinate within the
Crop TrustCropWildRelatives project demonstrates the usefulness of the system
and the benefits a shared informatics platform provides. These data resources
provide a foundation on which breeding and research communities can develop
additional online resources for their crops, harness new data as it becomes available,
and benefit collectively from future developments of the Germinate platform.","2020-06","published",,"Crop Science (TSI)",,,"Crop Science Society of America",,"1-29",,,,,,"doi:10.1002/csc2.20248",,,,,"TRUE",,"0011-183X",,,,,,"","https://doi.org/10.1002/csc2.20248","https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=10.1002%2Fcsc2.20248&btnG=","pub",,"","",,,,,,"",,,,,,,"",,,,,"",,,,,"","",,,,,"","",,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Kilian","B","","",,,,,,,,,,,,,,,,,,,,,,,"Global Crop Diversity Trust, Platz der Vereinten Nationen 7, Bonn","Germany",,,"S7","CRPS3",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Dreher","K","","",,,,"Female",,,,,,,,,,,,,,,,,,,"International Maize and Wheat Improvement Center (CIMMYT), Edo. De Mexico, Texcoco","Mexico",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Amri","A","","",,,,,,,,,,,,,,,,,,,,,,,"Universitat Politècnica de València, Valencia","Spain",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Bassi","F M","","",,,,,,,,,,,,,,,,,,,,,,,"Department of Botany, University of British Columbia, Vancouver, British Columbia","Canada",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Boukar","O","","",,,,,,,,,,,,,,,,,,,,,,,"ICRISAT (Patancheru)","India",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Cook","D","","",,,,,,,,,,,,,,,,,,,,,,,"SRUC, Peter Wilson Building,West Mains Road, Edinburgh","USA",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Cruickshank","A","","",,,,,,,,,,,,,,,,,,,,,,,"Department of Plant Pathology, College of Agricultural and Environmental Sciences, University of California–Davis, One Shields Avenue, Davis","Kenya",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Fatokun","C","","",,,,,,,,,,,,,,,,,,,,,,,"ICRISAT (Nairobi)","Australia",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"El Haddad","N","","",,,,,,,,,,,,,,,,,,,,,,,"South Australian Research and Development Institute (SARDI),Waite Institute, Urrbrae","Nigeria",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Humphries","A","","",,,,,,,,,,,,,,,,,,,,,,,"International Institute of Tropical Agriculture (IITA), Kano","Philippines",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Jordan","D","","",,,,,,,,,,,,,,,,,,,,,,,"International Institute of Tropical Agriculture (IITA), HQ, Ibadan","Vietnam",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Kehel","Z","","",,,,,,,,,,,,,,,,,,,,,,,"International Rice Research Institute (IRRI), Pili Drive, Los Baños, Laguna","Taiwan",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Kumar","S","","",,,,,,,,,,,,,,,,,,,,,,,"Plant Breeding & Genetics, Cornell University, Ithaca","Morocco",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Labarosa","S J","","",,,,,,,,,,,,,,,,,,,,,,,"University of Queensland and Department of Agriculture and Fisheries,Warwick",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Nguyen","L H","","",,,,,,,,,,,,,,,,,,,,,,,"Mekong Delta Development Research Institute, Can Tho University, Can Tho",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mace","E","","",,,,"Female",,,,,,,,,,,,,,,,,,,"The University of Bonn/Crop Trust, Bonn, Germany",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"McCouch","S","","",,,,,,,,,,,,,,,,,,,,,,,"Roland Schafleitner,World Vegetable Center, Shanhua, Taiwan",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"McNally","K","","",,,,,,,,,,,,,,,,,,,,,,,"International Center For Agricultural Research In The Dry Areas (ICARDA), Rabat",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Marshall","D F","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mikwa","E O","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Milne","I","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Odeny","D A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Plazas","M","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Prohens","J","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Rieseberg","L H","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Schafleitner","R","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Sharma","S","","",,,,"Female",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Stephen","G","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Tin","H Q","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Togola","A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Warschefsky","E","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Werner","P","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11571",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Shaw","P D","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,