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dc:title "HTML Summary of #11506 \n\nArachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications\n\n";
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bibo:abstract "Spatio-temporal and developmental stage-specific transcriptome analysis plays a crucial role in\r\nsystems biology-based improvement of any species. In this context, we report here the Arachis\r\nhypogaea gene expression atlas (AhGEA) for the world’s widest cultivated subsp. fastigiata based\r\non RNA-seq data using 20 diverse tissues across five key developmental stages. Approximately\r\n480 million paired-end filtered reads were generated followed by identification of 81 901\r\ntranscripts from an early-maturing, high-yielding, drought-tolerant groundnut variety, ICGV\r\n91114. Further, 57 344 genome-wide transcripts were identified with ≥1 FPKM across different\r\ntissues and stages. Our in-depth analysis of the global transcriptome sheds light into complex\r\nregulatory networks namely gravitropism and photomorphogenesis, seed development, allergens\r\nand oil biosynthesis in groundnut. Importantly, interesting insights into molecular basis of\r\nseed development and nodulation have immense potential for translational genomics research.\r\nWe have also identified a set of stable expressing transcripts across the selected tissues, which\r\ncould be utilized as internal controls in groundnut functional genomics studies. The AhGEA\r\nrevealed potential transcripts associated with allergens, which upon appropriate validation could\r\nbe deployed in the coming years to develop consumer-friendly groundnut varieties. Taken\r\ntogether, the AhGEA touches upon various important and key features of cultivated groundnut\r\nand provides a reference for further functional, comparative and translational genomics research\r\nfor various economically important traits."^^xsd:string;
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