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        "Oil Crop Research Institute (OCRI), Chinese Academy of Agricultural Science (CAAS), Wuhan, China",
        "College of Plant Protection, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China",
        "USDA-ARS Crop Protection and Management Research Unit (CPMRU), Tifton, GA, USA"
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      "rev_number": 15,
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      "title": "Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications",
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      "uri": "http://oar.icrisat.org/id/eprint/11506",
      "date_type": "published",
      "keywords": "Arachis hypogaea, Allergens, Gene expression atlas, Gravitropism, Oil biosynthesis, Photomorphogenesis",
      "refereed": "TRUE",
      "date": "2020-04",
      "full_text_status": "public",
      "publication": "Plant Biotechnology Journal (TSI)",
      "datestamp": "2020-05-15 09:20:46",
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        "CRPS3"
      ],
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            "eprintid": 11506
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      "official_url": "https://doi.org/10.1111/pbi.13374",
      "metadata_visibility": "show",
      "abstract": "Spatio-temporal and developmental stage-specific transcriptome analysis plays a crucial role in\r\nsystems biology-based improvement of any species. In this context, we report here the Arachis\r\nhypogaea gene expression atlas (AhGEA) for the world\u2019s widest cultivated subsp. fastigiata based\r\non RNA-seq data using 20 diverse tissues across five key developmental stages. Approximately\r\n480 million paired-end filtered reads were generated followed by identification of 81 901\r\ntranscripts from an early-maturing, high-yielding, drought-tolerant groundnut variety, ICGV\r\n91114. Further, 57 344 genome-wide transcripts were identified with \u22651 FPKM across different\r\ntissues and stages. Our in-depth analysis of the global transcriptome sheds light into complex\r\nregulatory networks namely gravitropism and photomorphogenesis, seed development, allergens\r\nand oil biosynthesis in groundnut. Importantly, interesting insights into molecular basis of\r\nseed development and nodulation have immense potential for translational genomics research.\r\nWe have also identified a set of stable expressing transcripts across the selected tissues, which\r\ncould be utilized as internal controls in groundnut functional genomics studies. The AhGEA\r\nrevealed potential transcripts associated with allergens, which upon appropriate validation could\r\nbe deployed in the coming years to develop consumer-friendly groundnut varieties. Taken\r\ntogether, the AhGEA touches upon various important and key features of cultivated groundnut\r\nand provides a reference for further functional, comparative and translational genomics research\r\nfor various economically important traits.",
      "issn": "1467-7644",
      "note": "We would like to thank Genotypic Technology Pvt Ltd, Bengaluru,\r\nIndia, for generating RNAseq data for some samples as sequencing\r\nservice provider. This work was supported by the Bill &\r\nMelinda Gates Foundation and the CGIAR Research Program on\r\nGrain Legumes and Dryland Cereals (GLDC). ICRISAT is a member\r\nof CGIAR Consortium.",
      "funders": [
        "Bill and Melinda Gates Foundation"
      ],
      "dir": "disk0/00/01/15/06",
      "subjects": [
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        "L1",
        "s1.3",
        "s2.12",
        "s2.13",
        "s2.17",
        "s355"
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      "publisher": "Wiley Open Access",
      "type": "article",
      "eprint_status": "archive"
    }