"11506","15","archive","3170",,,"disk0/00/01/15/06","2020-05-15 09:20:46","2020-05-15 09:20:46","2020-05-15 09:20:46","article",,,"show",,,,"","","","","","","","","","",,,,"Sinha","P","","","","","","","Sinha","P","","","","",,,,,"","",,,,,"","","ICRISAT (Patancheru)","India","Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications","pub","GL1","CRPS3","CG1","public",,,"Arachis hypogaea, Allergens, Gene expression atlas, Gravitropism, Oil biosynthesis, Photomorphogenesis",,"We would like to thank Genotypic Technology Pvt Ltd, Bengaluru,
India, for generating RNAseq data for some samples as sequencing
service provider. This work was supported by the Bill &
Melinda Gates Foundation and the CGIAR Research Program on
Grain Legumes and Dryland Cereals (GLDC). ICRISAT is a member
of CGIAR Consortium.","Spatio-temporal and developmental stage-specific transcriptome analysis plays a crucial role in
systems biology-based improvement of any species. In this context, we report here the Arachis
hypogaea gene expression atlas (AhGEA) for the world’s widest cultivated subsp. fastigiata based
on RNA-seq data using 20 diverse tissues across five key developmental stages. Approximately
480 million paired-end filtered reads were generated followed by identification of 81 901
transcripts from an early-maturing, high-yielding, drought-tolerant groundnut variety, ICGV
91114. Further, 57 344 genome-wide transcripts were identified with ≥1 FPKM across different
tissues and stages. Our in-depth analysis of the global transcriptome sheds light into complex
regulatory networks namely gravitropism and photomorphogenesis, seed development, allergens
and oil biosynthesis in groundnut. Importantly, interesting insights into molecular basis of
seed development and nodulation have immense potential for translational genomics research.
We have also identified a set of stable expressing transcripts across the selected tissues, which
could be utilized as internal controls in groundnut functional genomics studies. The AhGEA
revealed potential transcripts associated with allergens, which upon appropriate validation could
be deployed in the coming years to develop consumer-friendly groundnut varieties. Taken
together, the AhGEA touches upon various important and key features of cultivated groundnut
and provides a reference for further functional, comparative and translational genomics research
for various economically important traits.","2020-04","published",,"Plant Biotechnology Journal (TSI)",,,"Wiley Open Access",,"1-14",,,,,,"doi:10.1111/pbi.13374",,,,,"TRUE",,"1467-7644",,,,,,"","https://doi.org/10.1111/pbi.13374","https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=10.1111%2Fpbi.13374&btnG=","pub",,"Bill and Melinda Gates Foundation","",,,,,,"",,,,,,,"",,,,,"",,,,,"","",,,,,"","",,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Bajaj","P","","",,,,,"Bajaj","P","","",,,,,,,,,,,,,,,"Department of Biotechnology, University of Agricultural Sciences (UAS), Dharwad, India","China",,,"L1",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Pazhamala","L T","","",,,,,"Pazhamala","L T","","",,,,,,,,,,,,,,,"Oil Crop Research Institute (OCRI), Chinese Academy of Agricultural Science (CAAS), Wuhan, China","USA",,,"s1.3",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Nayak","S N","","",,,,,"Nayak","S N","","",,,,,,,,,,,,,,,"College of Plant Protection, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China",,,,"s2.12",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Pandey","M K","","",,,,,"Pandey","M K","","",,,,,,,,,,,,,,,"USDA-ARS Crop Protection and Management Research Unit (CPMRU), Tifton, GA, USA",,,,"s2.13",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Chitikineni","A","","",,,,,"Chitikineni","A","","",,,,,,,,,,,,,,,,,,,"s2.17",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Huai","D","","",,,,,"Khan","A W","","",,,,,,,,,,,,,,,,,,,"s355",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Khan","A W","","",,,,,"Desai","A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Desai","A","","",,,,,"Varshney","R K","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Jiang","H","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Zhuang","W","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Guo","B","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Liao","B","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11506",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Varshney","R K","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,