eprintid: 11487
rev_number: 6
eprint_status: archive
userid: 3170
dir: disk0/00/01/14/87
datestamp: 2020-04-11 12:11:56
lastmod: 2020-04-11 12:11:56
status_changed: 2020-04-11 12:11:56
type: article
metadata_visibility: show
creators_name: Khan, A W
creators_name: Garg, V
creators_name: Roorkiwal, M
creators_name: Golicz, A A
creators_name: Edwards, D
creators_name: Varshney, R K
creators_gender: Female
icrisatcreators_name: Garg, V
icrisatcreators_name: Roorkiwal, M
icrisatcreators_name: Varshney, R K
affiliation: ICRISAT (Patancheru)
affiliation: School of Biological Sciences, The University of Western Australia (UWA), Crawley, WA, Australia
affiliation: Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, Melbourne, VIC, Australia
country: India
country: Australia
title: Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement
ispublished: pub
subjects: s2.13
divisions: CRPS3
crps: CG1
full_text_status: public
keywords: Pangenome, Structural variations, Crop wild relatives, genomics-assisted breeding, copy number variations, presence/absence variations
note: The authors are thankful to Australia–India Strategic Research Fund (AISRF) project funded by the Department of Biotechnology, Government of India and Tropical Legumes project funded by Bill & Melinda Gates Foundation for financial assistance. R.K.V. is thankful to the Department of Science and Technology, Government of India for providing the JC Bose National Fellowship. The work reported in this article was undertaken as a part of the CGIAR Research Program on Grain Legumes and Dryland Cereals. ICRISAT is a member of the CGIAR consortium.
abstract: The pangenome provides genomic variations in the cultivated gene pool for a given species. However, as the crop’s gene pool comprises many species, especially wild relatives with diverse genetic stock, here we suggest using accessions from all available species of a given genus for the development of a more comprehensive and complete pangenome, which we refer to as a super-pangenome. The super-pangenome provides a complete genomic variation repertoire of a genus and offers unprecedented opportunities for crop improvement. This opinion article focuses on recent developments in crop pangenomics, the need for a super-pangenome that should include wild species, and its application for crop improvement.
date: 2020-02
date_type: published
publication: Trends in Plant Science (TSI)
volume: 25
number: 2
publisher: Elsevier
pagerange: 148-158
id_number: doi:10.1016/j.tplants.2019.10.012
refereed: TRUE
issn: 1360-1385
official_url: https://doi.org/10.1016/j.tplants.2019.10.012
related_url_url: https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=10.1016%2Fj.tplants.2019.10.012&btnG=
related_url_type: pub
citation:   Khan, A W and Garg, V and Roorkiwal, M and Golicz, A A and Edwards, D and Varshney, R K  (2020) Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.  Trends in Plant Science (TSI), 25 (2).  pp. 148-158.  ISSN 1360-1385     
document_url: http://oar.icrisat.org/11487/1/5_Super%20Pan%20Genome_PIIS136013851930281X.pdf