eprintid: 11428
rev_number: 11
eprint_status: archive
userid: 3170
dir: disk0/00/01/14/28
datestamp: 2020-04-01 05:26:04
lastmod: 2020-04-01 05:26:04
status_changed: 2020-04-01 05:26:04
type: article
metadata_visibility: show
creators_name: Zhao, J
creators_name: Bayer, P E
creators_name: Ruperao, P
creators_name: Saxena, R K
creators_name: Khan, A W
creators_name: Golicz, A A
creators_name: Nguyen, H T
creators_name: Batley, J
creators_name: Edwards, D
creators_name: Varshney, R K
icrisatcreators_name: Saxena, R K
icrisatcreators_name: Varshney, R K
affiliation: Rice Research Institute, Guangdong Academy of Agricultural Sciences, (Guangzhou)
affiliation: Guangdong Key Laboratory of New Technology in Rice Breeding, (Guangzhou)
affiliation: School of Biological Sciences and Institute of Agriculture, The University of Western Australia, (Perth)
affiliation: National Institute of Agricultural Botany, (Cambridge)
affiliation: ICRISAT (Patancheru)
affiliation: Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, (Melbourne)
affiliation: Division of Plant Sciences, University of Missouri, (Columbia)
country: China
country: Australia
country: UK
country: India
country: USA
title: Trait associations in the pangenome of pigeon pea ( Cajanus cajan )
ispublished: pub
subjects: s1.2
subjects: s2.13
subjects: s2.17
divisions: CRPS3
full_text_status: public
keywords: Pigeon pea, Pangenome, GWAS, Orphan crops, Presence Orabsence Variation
note: This research was supported by the Australian Governmentthrough the Australian Research Council’sLinkage Projectsfunding  scheme  (project  LP140100537,  LP160100030).  PBacknowledges support of the Forrest Research Foundation.
abstract: Pigeon pea (Cajanus cajan) is an important orphan crop mainly grown by smallholder farmers inIndia and Africa. Here, we present the first pigeon pea pangenome based on 89 accessionsmainly from India and the Philippines, showing that there is significant genetic diversity inPhilippine individuals that is not present in Indian individuals. Annotation of variable genessuggests that they are associated with self-fertilization and response to disease. We identified225 SNPs associated with nine agronomically important traits over three locations and twodifferent time points, with SNPs associated with genes for transcription factors and kinases.These results will lead the way to an improved pigeon pea breeding programme.
date: 2020-01
date_type: published
publication: Plant Biotechnology Journal (TSI)
publisher: Wiley Open Access
pagerange: 1-9
id_number: doi:10.1111/pbi.13354
refereed: TRUE
issn: 1467-7644
official_url: https://doi.org/10.1111/pbi.13354
related_url_url: https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=10.1111%2Fpbi.13354&btnG=
related_url_type: pub
citation:   Zhao, J and Bayer, P E and Ruperao, P and Saxena, R K and Khan, A W and Golicz, A A and Nguyen, H T and Batley, J and Edwards, D and Varshney, R K  (2020) Trait associations in the pangenome of pigeon pea ( Cajanus cajan ).  Plant Biotechnology Journal (TSI).  pp. 1-9.  ISSN 1467-7644     
document_url: http://oar.icrisat.org/11428/1/pbi.13354.pdf