"11375","15","archive","3170",,,"disk0/00/01/13/75","2020-02-14 09:32:20","2020-02-14 09:32:20","2020-02-14 09:32:20","article",,,"show",,,,"","","","","","","","","","",,,,"Diaz","M","","","","","","","Manthi Josiah","S","","","","",,,,,"","",,,,,"","","Food Innovation and Health Institute Strategic Programme, Quadram Institute Bioscience, Norwich Research Park, (Norwich)","UK","Comparison of the microbial composition of African fermented foods using amplicon sequencing","pub","S1","CRPS5","","public",,,"Fermented Foods, Sequencing",,"This work was supported by the UK Biotechnology and Biological Sciences Research Council (BBSRC) via a
Global Challenge Research Fund Data and Resources award and Institute Strategic Programmes for Food
Innovation and Health (BB/R012512/1) and its constituent project BBS/E/F/000PR10343 and Gut Microbes and
Health (BB/R012490/1). M. D. was the beneficiary of a Clarin COFUND outgoing grants (ACA17–16) co-funded
by the 7th Work Package of the European Union, Marie Curie Actions and the FICyT Foundation.","Fermented foods play a major role in the diet of people in Africa, where a wide variety of raw materials
are fermented. Understanding the microbial populations of these products would help in the design of
specific starter cultures to produce standardized and safer foods. In this study, the bacterial diversity of
African fermented foods produced from several raw materials (cereals, milk, cassava, honey, palm sap,
and locust beans) under different conditions (household, small commercial producers or laboratory) in 8
African countries was analysed by 16S rRNA gene amplicon sequencing during the Workshop “Analysis
of the Microbiomes of Naturally Fermented Foods Training Course”. Results show that lactobacilli
were less abundant in fermentations performed under laboratory conditions compared to artisanal or
commercial fermentations. Excluding the samples produced under laboratory conditions, lactobacilli
is one of the dominant groups in all the remaining samples. Genera within the order Lactobacillales
dominated dairy, cereal and cassava fermentations. Genera within the order Lactobacillales, and genera
Zymomonas and Bacillus were predominant in alcoholic beverages, whereas Bacillus and Lactobacillus
were the dominant genera in the locust bean sample. The genus Zymomonas was reported for the first
time in dairy, cereal, cassava and locust bean fermentations.","2019-09","published",,"Scientific Reports (TSI)","9","1","Nature Research",,"1-8",,,,,,"doi:10.1038/s41598-019-50190-4",,,,,"TRUE",,"2045-2322",,,,,,"","https://doi.org/10.1038/s41598-019-50190-4","https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=Comparison+of+the+microbial+composition+of+African+fermented+foods+using+amplicon+sequencing&btnG=","pub",,"","",,,,,,"",,,,,,,"",,,,,"",,,,,"","",,,,,"","",,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Kellingray","L","","",,,,,"Odeny","D A","","",,,,,,,,,,,,,,,"Gut Microbes and Health Institute Strategic Programme, Quadram Institute Bioscience, Norwich Research Park, (Norwich)","Nigeria",,,"S4",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Akinyemi","N","","",,,,,,,,,,,,,,,,,,,,,,,"Department of Microbiology, Faculty of Science, University of Lagos, (Lagos)","South Africa",,,"ca1",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Adefiranye","O O","","",,,,,,,,,,,,,,,,,,,,,,,"Consumer and Food Science Department, University of Pretoria, (Pretoria)","Burkina Faso",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Olaonipekun","A B","","",,,,,,,,,,,,,,,,,,,,,,,"Département Technologie Alimentaire DTA/IRSAT/CNRST, (Ouagadougou)","Benin",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Bayili","G R","","",,,,,,,,,,,,,,,,,,,,,,,"Laboratoire de Sciences des Aliments, Université d’Abomey-Calavi, (Abomey-Calavi)","Uganda",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Ibezim","J","","",,,,,,,,,,,,,,,,,,,,,,,"Department of Food Technology & Nutrition, Makerere University, (Kampala)","Ethiopia",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"du Plessis","A S","","",,,,,,,,,,,,,,,,,,,,,,,"Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, (Addis Ababa)","Kenya",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Houngbédji","M","","",,,,,,,,,,,,,,,,,,,,,,,"ICRISAT (Nairobi)","Ghana",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Kamya","D","","",,,,,,,,,,,,,,,,,,,,,,,"Department of Food Science and Technology, The Technical University if Kenya, (Nairobi)","USA",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mukisa","I M","","",,,,,,,,,,,,,,,,,,,,,,,"CSIR-Food Research Institute, (Accra)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mulaw","G","","",,,,,,,,,,,,,,,,,,,,,,,"Institute of Biotechnology, Addis Ababa University, (Addis Ababa)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Manthi Josiah","S","","",,,,,,,,,,,,,,,,,,,,,,,"A.R. Smith Department of Chemistry and Fermentation Sciences, Appalachian State University, (Boone)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Onyango Chienjo","W","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Atter","A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Agbemafle","E","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Annan","T","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Bernice Ackah","N","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Buys","E M","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Joseph Hounhouigan","D","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Muyanja","C","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Nakavuma","J","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Odeny","D A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Sawadogo-Lingani","H","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Tesfaye Tefera","A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Amoa-Awua","W","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Obodai","M","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Mayer","M J","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Oguntoyinbo","F A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"11375",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Narbad","A","","",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,