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dc:title "HTML Summary of #11374 \n\nGenome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L. (Moench)\n\n";
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bibo:abstract "Members of the plant Heme Activator Protein (HAP) or NUCLEAR FACTOR Y (NF-Y) are trimeric\r\ntranscription factor complexes composed of the NF-YA, NF-YB and NF-YC subfamilies.\r\nThey bind to the CCAAT box in the promoter regions of the target genes and regulate gene\r\nexpressions. Plant NF-Ys were reported to be involved in adaptation to several abiotic\r\nstresses as well as in development. In silico analysis of Sorghum bicolor genome resulted in\r\nthe identification of a total of 42 NF-Y genes, among which 8 code for the SbNF-YA, 19 for\r\nSbNF-YB and 15 for the SbNF-YC subunits. Analysis was also performed to characterize\r\ngene structures, chromosomal distribution, duplication status, protein subcellular localizations,\r\nconserved motifs, ancestral protein sequences, miRNAs and phylogenetic tree construction.\r\nPhylogenetic relationships and ortholog predictions displayed that sorghum has additional\r\nNF-YB genes with unknown functions in comparison with Arabidopsis. Analysis of promoters\r\nrevealed that they harbour many stress-related cis-elements like ABRE and HSE, but surprisingly,\r\nDRE and MYB elements were not detected in any of the subfamilies. SbNF-YA1, 2, and\r\n6 were found upregulated under 200 mM salt and 200 mM mannitol stresses. While NF-YA7\r\nappeared associated with high temperature (40˚C) stress, NF-YA8 was triggered by both cold\r\n(4˚C) and high temperature stresses. Among NF-YB genes, 7, 12, 15, and 16 were induced\r\nunder multiple stress conditions such as salt, mannitol, ABA, cold and high temperatures.\r\nLikewise, NF-YC 6, 11, 12, 14, and 15 were enhanced significantly in a tissue specific manner\r\nunder multiple abiotic stress conditions. Majority of the mannitol (drought)-inducible genes\r\nwere also induced by salt, high temperature stresses and ABA. Few of the high temperature\r\nstress-induced genes are also induced by cold stress (NF-YA2, 4, 6, 8, NF-YB2, 7, 10, 11, 12,\r\n14, 16, 17, NF-YC4, 6, 12, and 13) thus suggesting a cross talk among them. This work paves\r\nthe way for investigating the roles of diverse sorghum NF-Y proteins during abiotic stress\r\nresponses and provides an insight into the evolution of diverse NF-Y members."^^xsd:string;
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dct:date "2019-09";
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