eprintid: 11262
rev_number: 11
eprint_status: archive
userid: 1305
dir: disk0/00/01/12/62
datestamp: 2019-08-21 08:41:07
lastmod: 2019-08-21 08:41:24
status_changed: 2019-08-21 08:41:07
type: article
metadata_visibility: show
creators_name: Ahn, E
creators_name: Hu, Z
creators_name: Perumal, R
creators_name: Prom, L K
creators_name: Odvody, G
creators_name: Upadhyaya, H D
creators_name: Magill, C
icrisatcreators_name: Upadhyaya, H D
affiliation: Department of Plant Pathology & Microbiology, Texas A&M University (Texas)
affiliation: Department of Agronomy, Kansas State University (Manhattan)
affiliation: Kansas State University, Agricultural Research Center (Kansas)
affiliation: USDA-ARS Southern Plains Agricultural Research Center (Texas)
affiliation: Texas A&M AgriLife Research, Corpus Christi (Texas)
affiliation: ICRISAT (Patancheru)
affiliation: King Abdulaziz University (Jeddah)
country: US
country: India
country: Saudi Arabia
title: Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut
ispublished: pub
subjects: s1.4
subjects: s2.13
subjects: s3000
divisions: CRPS3
full_text_status: public
keywords: Sorghum, sorghum mini core collection, SNPs
note: This work was supported by: USDA NIFA
Project #1009370 (https://nifa.usda.gov) to CM;
Global Crop Diversity Trust #GSP09GRD2 2.4 02
(https://www.croptrust.org) to CM & RP. The
funders had no role in study design, data collection
and analysis, decision to publish, or preparation of
the manuscript.
abstract: In previous studies, a sorghum mini core collection was scored over several years for response to Colletotrichum sublineola, Peronosclerospora sorghi, and Sporisorium reilianum, the causal agents of the disease anthracnose, downy mildew, and head smut, respectively. The screening results were combined with over 290,000 Single nucleotide polymorphic (SNP) loci from an updated version of a publicly available genotype by sequencing (GBS) dataset available for the mini core collection. GAPIT (Genome Association and Prediction Integrated Tool) R package was used to identify chromosomal locations that differ in disease response. When the top scoring SNPs were mapped to the most recent version of the published sorghum genome, in each case, a nearby and most often the closest annotated gene has precedence for a role in host defense.
date: 2019-05
date_type: published
publication: PLoS ONE (TSI)
volume: 14
number: 5
publisher: PLOS
pagerange: 1-16
id_number: 10.1371/journal.pone.0216671
refereed: TRUE
issn: 1932-6203
official_url: https://doi.org/10.1371/journal.pone.0216671
related_url_url: https://scholar.google.co.in/scholar?hl=en&as_sdt=0%2C5&q=Genome+wide+association+analysis+of+sorghum+mini+core+lines+regarding+anthracnose%2C+downy+mildew%2C+and+head+smut&btnG=
related_url_type: pub
citation:   Ahn, E and Hu, Z and Perumal, R and Prom, L K and Odvody, G and Upadhyaya, H D and Magill, C  (2019) Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut.  PLoS ONE (TSI), 14 (5).  pp. 1-16.  ISSN 1932-6203     
document_url: http://oar.icrisat.org/11262/1/Genome%20wide%20association%20analysis%20of%20sorghum%20mini%20core%20lines%20regarding%20anthracnose%2C%20downy%20mildew%2C%20and%20head%20smut.pdf