TY  - JOUR
AV  - public
A1  - Ahn, E
A1  - Hu, Z
A1  - Perumal, R
A1  - Prom, L K
A1  - Odvody, G
A1  - Upadhyaya, H D
A1  - Magill, C
TI  - Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut
UR  - https://doi.org/10.1371/journal.pone.0216671
JF  - PLoS ONE (TSI)
SN  - 1932-6203
PB  - PLOS
N1  - This work was supported by: USDA NIFA
Project #1009370 (https://nifa.usda.gov) to CM;
Global Crop Diversity Trust #GSP09GRD2 2.4 02
(https://www.croptrust.org) to CM & RP. The
funders had no role in study design, data collection
and analysis, decision to publish, or preparation of
the manuscript.
N2  - In previous studies, a sorghum mini core collection was scored over several years for response to Colletotrichum sublineola, Peronosclerospora sorghi, and Sporisorium reilianum, the causal agents of the disease anthracnose, downy mildew, and head smut, respectively. The screening results were combined with over 290,000 Single nucleotide polymorphic (SNP) loci from an updated version of a publicly available genotype by sequencing (GBS) dataset available for the mini core collection. GAPIT (Genome Association and Prediction Integrated Tool) R package was used to identify chromosomal locations that differ in disease response. When the top scoring SNPs were mapped to the most recent version of the published sorghum genome, in each case, a nearby and most often the closest annotated gene has precedence for a role in host defense.
KW  - Sorghum
KW  -  sorghum mini core collection
KW  -  SNPs
Y1  - 2019/05//
SP  - 1
ID  - icrisat11262
EP  - 16
VL  - 14
IS  - 5
ER  -