http://oar.icrisat.org/id/eprint/11262 2019-08-21T08:41:24Z info:eu-repo/semantics/descriptiveMetadata http://oar.icrisat.org/11262/ Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut Ahn, E Hu, Z Perumal, R Prom, L K Odvody, G Upadhyaya, H D Magill, C Sorghum Genetics and Genomics Germplasm In previous studies, a sorghum mini core collection was scored over several years for response to Colletotrichum sublineola, Peronosclerospora sorghi, and Sporisorium reilianum, the causal agents of the disease anthracnose, downy mildew, and head smut, respectively. The screening results were combined with over 290,000 Single nucleotide polymorphic (SNP) loci from an updated version of a publicly available genotype by sequencing (GBS) dataset available for the mini core collection. GAPIT (Genome Association and Prediction Integrated Tool) R package was used to identify chromosomal locations that differ in disease response. When the top scoring SNPs were mapped to the most recent version of the published sorghum genome, in each case, a nearby and most often the closest annotated gene has precedence for a role in host defense. PLOS 2019-05 Article PeerReviewed application/pdf en http://oar.icrisat.org/11262/1/Genome%20wide%20association%20analysis%20of%20sorghum%20mini%20core%20lines%20regarding%20anthracnose%2C%20downy%20mildew%2C%20and%20head%20smut.pdf Ahn, E and Hu, Z and Perumal, R and Prom, L K and Odvody, G and Upadhyaya, H D and Magill, C (2019) Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut. PLoS ONE (TSI), 14 (5). pp. 1-16. ISSN 1932-6203 https://doi.org/10.1371/journal.pone.0216671 10.1371/journal.pone.0216671 info:eu-repo/semantics/objectFile info:eu-repo/semantics/humanStartPage