eprintid: 11063
rev_number: 14
eprint_status: archive
userid: 1305
dir: disk0/00/01/10/63
datestamp: 2019-02-14 09:13:49
lastmod: 2020-01-17 03:07:50
status_changed: 2019-02-14 09:13:49
type: article
metadata_visibility: show
creators_name: Ha, J
creators_name: Shim, S
creators_name: Lee, T
creators_name: Kang, Y J
creators_name: Hwang, W J
creators_name: Jeong, H
creators_name: Laosatit, K
creators_name: Lee, J
creators_name: Kim, S K
creators_name: Satyawan, D
creators_name: Lestari, P
creators_name: Yoon, M Y
creators_name: Kim, M Y
creators_name: Chitikineni, A
creators_name: Tanya, P
creators_name: Somta, P
creators_name: Srinives, P
creators_name: Varshney, R K
creators_name: Lee, S H
creators_id: F
creators_id: F
creators_gender: Female
creators_gender: Female
icrisatcreators_name: Chitikineni, A
icrisatcreators_name: Varshney, R K
affiliation: Department of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National University (Seoul)
affiliation: Plant Genomics and Breeding Institute, Seoul National University (Seoul)
affiliation: Division of Applied Life Science (BK21 plus program) Department, Gyeongsang National University, PMBBRC (Jinju-si)
affiliation: Division of Life Science Department, Gyeongsang National University (Jinju-si)
affiliation: CJ Food R&D (Suwon)
affiliation: Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University (Nakhon Pathom)
affiliation: Department of Chemistry, College of Natural Science, Dankook University (Cheonan)
affiliation: Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (ICABIOGRAD-IAARD) (Bogor)
affiliation: ICRISAT (Patancheru)
country: South Korea
country: Thailand
country: Indonesia
country: India
title: Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits
ispublished: pub
subjects: s2.13
subjects: s2.9
divisions: CRPS3
full_text_status: public
keywords: oil synthesis, phorbol ester, biodiesel, seed cake, energy production, phylogenetic analysis
note: This research was supported by a grant from the Next Generation BioGreen 21 Program (Code No. PJ01326101), Rural Development Administration, Republic of Korea and Science and Technology Support Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Science and ICT(MSIT) (2013K1A3A9A01044312). Hwang, Won Joo is affiliated with CJ Food R&D, Suwon 16495, Republic of Korea. The authors declare no conflict of interest.
abstract: Jatropha curcas (physic nut), a non‐edible oilseed crop, represents one of the most promising alternative energy sources due to its high seed oil content, rapid growth and adaptability to various environments. We report ~339 Mbp draft whole genome sequence of J. curcas var. Chai Nat using both the PacBio and Illumina sequencing platforms. We identified and categorized differentially expressed genes related to biosynthesis of lipid and toxic compound among four stages of seed development. Triacylglycerol (TAG), the major component of seed storage oil, is mainly synthesized by phospholipid:diacylglycerol acyltransferase in Jatropha, and continuous high expression of homologs of oleosin over seed development contributes to accumulation of high level of oil in kernels by preventing the breakdown of TAG. A physical cluster of genes for diterpenoid biosynthetic enzymes, including casbene synthases highly responsible for a toxic compound, phorbol ester, in seed cake, was syntenically highly conserved between Jatropha and castor bean. Transcriptomic analysis of female and male flowers revealed the up‐regulation of a dozen family of TFs in female flower. Additionally, we constructed a robust species tree enabling estimation of divergence times among nine Jatropha species and five commercial crops in Malpighiales order. Our results will help researchers and breeders increase energy efficiency of this important oil seed crop by improving yield and oil content, and eliminating toxic compound in seed cake for animal feed.
date: 2019
date_type: published
publication: Plant Biotechnology Journal (TSI)
volume: 17
number: 2
publisher: Wiley
pagerange: 517-530
id_number: 10.1111/pbi.12995
refereed: TRUE
issn: 14677644
official_url: http://dx.doi.org/10.1111/pbi.12995
related_url_url: https://scholar.google.co.in/scholar?hl=en&as_sdt=0%2C5&q=Genome+sequence+of+Jatropha+curcas+L.%2C+a+non-edible+biodiesel+plant%2C+provides+a+resource+to+improve+seed-related+traits&btnG=
related_url_type: pub
citation:   Ha, J and Shim, S and Lee, T and Kang, Y J and Hwang, W J and Jeong, H and Laosatit, K and Lee, J and Kim, S K and Satyawan, D and Lestari, P and Yoon, M Y and Kim, M Y and Chitikineni, A and Tanya, P and Somta, P and Srinives, P and Varshney, R K and Lee, S H  (2019) Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits.  Plant Biotechnology Journal (TSI), 17 (2).  pp. 517-530.  ISSN 14677644     
document_url: http://oar.icrisat.org/11063/1/Genome%20sequence%20of%20Jatropha%20curcas.pdf