eprintid: 10183
rev_number: 32
eprint_status: archive
userid: 1305
dir: disk0/00/01/01/83
datestamp: 2017-09-19 06:38:12
lastmod: 2018-04-23 04:27:14
status_changed: 2017-09-19 06:38:12
type: article
metadata_visibility: show
creators_name: Varshney, R K
creators_name: Shi, C
creators_name: Thudi, M
creators_name: Mariac, C
creators_name: Wallace, J
creators_name: Qi, P
creators_name: Zhang, H
creators_name: Zhao, Y
creators_name: Wang, X
creators_name: Rathore, A
creators_name: Srivastava, R K
creators_name: Chitikineni, A
creators_name: Fan, G
creators_name: Bajaj, P
creators_name: Punnuri, S
creators_name: Gupta, S K
creators_name: Wang, H
creators_name: Jiang, Y
creators_name: Couderc, M
creators_name: Katta, M A V S K
creators_name: Paudel, D R
creators_name: Mungra, K D
creators_name: Chen, W
creators_name: Harris-Shultz, K R
creators_name: Garg, V
creators_name: Desai, N
creators_name: Doddamani, D
creators_name: Kane, N A
creators_name: Conner, J A
creators_name: Ghatak, A
creators_name: Chaturvedi, P
creators_name: Subramaniam, S
creators_name: Yadav, O P
creators_name: Berthouly-Salazar, C
creators_name: Hamidou, F
creators_name: Wang, J
creators_name: Liang, X
creators_name: Clotault, J
creators_name: Upadhyaya, H D
creators_name: Cubry, P
creators_name: Rhoné, B
creators_name: Gueye, M C
creators_name: Sunkar, R
creators_name: Dupuy, C
creators_name: Sparvoli, F
creators_name: Cheng, S
creators_name: Mahala, R S
creators_name: Singh, B
creators_name: Yadav, R S
creators_name: Lyons, E
creators_name: Datta, S K
creators_name: Hash, C T
creators_name: Devos, K M
creators_name: Buckler, E
creators_name: Bennetzen, J L
creators_name: Paterson, A H
creators_name: Ozias-Akins, P
creators_name: Grando, S
creators_name: Wang, J
creators_name: Mohapatra, T
creators_name: Weckwerth, W
creators_name: Reif, J C
creators_name: Liu, X
creators_name: Vigouroux, Y
creators_name: Xu, X
icrisatcreators_name: Varshney, R K
icrisatcreators_name: Thudi, M
icrisatcreators_name: Rathore, A
icrisatcreators_name: Srivastava, R K
icrisatcreators_name: Chitikineni, A
icrisatcreators_name: Bajaj, P
icrisatcreators_name: Gupta, S K
icrisatcreators_name: Katta, M A V S K
icrisatcreators_name: Garg, V
icrisatcreators_name: Doddamani, D
icrisatcreators_name: Upadhyaya, H D
icrisatcreators_name: Grando, S
icrisatcreators_name: Hamidou, F
icrisatcreators_name: Hash, C T
affiliation: ICRISAT (Patancheru)
affiliation: BGI-Shenzhen (Shenzhen)
affiliation: Institut de recherche pour le développement (IRD) (Montpellier)
affiliation: University of Georgia, Athens (Georgia)
affiliation: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) (Gatersleben)
affiliation: Fort Valley State University, Fort Valley (Georgia)
affiliation: Cornell University, Ithaca (New York)
affiliation: University of Florida, Gainesville (Florida)
affiliation: Junagadh Agricultural University, Jamnagar (Gujarat)
affiliation: United States Department of Agriculture—Agricultural Research Service (USDA-ARS) (Tifton)
affiliation: Department of Ecogenomics and Systems Biology, University of Vienna (Vienna)
affiliation: Amity University (Mumbai)
affiliation: Institut Sénégalais de Recherches Agricoles (ISRA) (Dakar)
affiliation: University of Georgia (Tifton)
affiliation: School of Bioinformatics and Biotechnology, D.Y. Patil University (Mumbai)
affiliation: University of Arizona (Tucson)
affiliation: Phoenix Bioinformatics, Redwood City (California)
affiliation: Indian Council of Agricultural Research (ICAR)—Central Arid Zone Research Institute (CAZRI) (Jodhpur)
affiliation: Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux, Centre de Recherche de Bel Air (Dakar)
affiliation: ICRISAT (Niamey)
affiliation: Faculty of Sciences and Techniques, University Abdou Moumouni (Niamey)
affiliation: University of Montpellier (Montpellier)
affiliation: Laboratoire de biométrie et Biologie Evolutive, Université Lyon 1 (Villeurbanne)
affiliation: Oklahoma State University, Stillwater (Oklahoma)
affiliation: Institut des Mondes Africains (IMAf) (Paris)
affiliation: CNR-Consiglio Nazionale delle Ricerche, Istituto di Biologia e Biotecnologia Agraria (Milan)
affiliation: Pioneer Hi-Bred Private Limited (Hyderabad)
affiliation: Institute of Biological, Environmental and Rural Sciences, Aberystwyth University (Ceredigion)
affiliation: Visva-Bharati, Santiniketan (West Bengal)
affiliation: USDA-ARS, Ithaca (New York)
affiliation: Indian Council of Agricultural Research (ICAR) (New Delhi)
affiliation: Vienna Metabolomics Center (VIME), University of Vienna (Vienna)
affiliation: BGI-Qingdao (Qingdao)
affiliation: China National GeneBank (CNGB) (Shenzen)
country: India
country: China
country: France
country: USA
country: Germany
country: Austria
country: Senegal
country: Niger
country: Italy
country: UK
title: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments
ispublished: pub
subjects: G1
subjects: N12
subjects: PLB1
subjects: S1
subjects: S1.5
subjects: S1.5.1
subjects: s10
subjects: s2.13
subjects: s2.8
subjects: s28
subjects: s9
divisions: CRPS2
divisions: CRPS3
divisions: CRPS1
crps: crp1.4
full_text_status: public
keywords: Pearl millet, genome sequence, agronomic traits, arid environments, global temperatures, climate change, heat tolerance, drought tolerance, draft genome, resequencing data, genetic improvement, semi-arid regions, dyland cereals, cereals, cereal crops, climate
note: We are thankful to several colleagues and collaborators especially X. Tan from The University of Georgia and C.T. Satyavathi from ICAR-All India Coordinated Research Project on Pearl Millet, for their help in analysis and interpretation of some data. This study was supported in part by the Bill and Melinda Gates Foundation, USA (Grant ID# OPP1052922), Agence Nationale de la Recherche, France (Grant ID: ANR-13-BSV7-0017), and Basic Research Program from the Shenzhen Municipal Government, China (NO.JCYJ20150529150505656). This work has been undertaken as part of the CGIAR Research Program on Dryland Cereals, ICRISAT, India. ICRISAT is a member of the CGIAR.
abstract: Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report the ~1.79 Gb draft whole genome sequence of reference genotype Tift 23D2B1-P1-P5, which contains an estimated 38,579 genes. We highlight the substantial enrichment for wax biosynthesis genes, which may contribute to heat and drought tolerance in this crop. We resequenced and analyzed 994 pearl millet lines, enabling insights into population structure, genetic diversity and domestication. We use these resequencing data to establish marker trait associations for genomic selection, to define heterotic pools, and to predict hybrid performance. We believe that these resources should empower researchers and breeders to improve this important staple crop.
date: 2017-09-18
date_type: published
publication: Nature Biotechnology
publisher: Nature Publishing Group
pagerange: 1-13
id_number: 10.1038/nbt.3943
refereed: TRUE
issn: 1087-0156
official_url: http://dx.doi.org/10.1038/nbt.3943
related_url_url: https://scholar.google.co.in/scholar?as_q=Pearl+millet+genome+sequence+provides+a+resource+to+improve+agronomic+traits+in+arid+environments&as_epq=&as_oq=&as_eq=&as_occt=title&as_sauthors=&as_publication=&as_ylo=&as_yhi=&btnG=&hl=en&as_sdt=0%2C5
related_url_type: pub
citation:   Varshney, R K and Shi, C and Thudi, M and Mariac, C and Wallace, J and Qi, P and Zhang, H and Zhao, Y and Wang, X and Rathore, A and Srivastava, R K and Chitikineni, A and Fan, G and Bajaj, P and Punnuri, S and Gupta, S K and Wang, H and Jiang, Y and Couderc, M and Katta, M A V S K and Paudel, D R and Mungra, K D and Chen, W and Harris-Shultz, K R and Garg, V and Desai, N and Doddamani, D and Kane, N A and Conner, J A and Ghatak, A and Chaturvedi, P and Subramaniam, S and Yadav, O P and Berthouly-Salazar, C and Hamidou, F and Wang, J and Liang, X and Clotault, J and Upadhyaya, H D and Cubry, P and Rhoné, B and Gueye, M C and Sunkar, R and Dupuy, C and Sparvoli, F and Cheng, S and Mahala, R S and Singh, B and Yadav, R S and Lyons, E and Datta, S K and Hash, C T and Devos, K M and Buckler, E and Bennetzen, J L and Paterson, A H and Ozias-Akins, P and Grando, S and Wang, J and Mohapatra, T and Weckwerth, W and Reif, J C and Liu, X and Vigouroux, Y and Xu, X  (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.  Nature Biotechnology.  pp. 1-13.  ISSN 1087-0156     
document_url: http://oar.icrisat.org/10183/1/Pearl%20millet.pdf
document_url: http://oar.icrisat.org/10183/7/nbt0418-368d.pdf