Assessment of Genetic Variability in Job’s Tears (Coix lacryma-jobi L.) Germplasm from Indian NEH Region Using Morpho-physiological Traits and SSR Markers

Pandey, A and Lap, B and Aochen, C and Kumar, Amit and Tyagi, W and Rai, M (2024) Assessment of Genetic Variability in Job’s Tears (Coix lacryma-jobi L.) Germplasm from Indian NEH Region Using Morpho-physiological Traits and SSR Markers. Plant Molecular Biology Reporter. pp. 1-11. ISSN 0735-9640

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Abstract

Coix lacryma-jobi L. is a minor millet and an underutilized crop native to Asia that is of paramount importance in food and medicine. In India, the crop is mainly grown in the northeastern hill region for food, medicine, beverage, and fodder purposes. Genetic information on edible Job’s tears and wild relatives still needs improvement. Therefore, the study focused on characterizing 65 accessions of Job’s tears, including landraces and wild types collected from the northeastern hill region of India, using 20 morphological traits, three biochemical traits, and 16 SSR markers. Based on grain yield data, JTN11 and IC89392 were the most promising accessions. Biochemical analysis recorded IC417053, JTN3, and IC89393 as having the highest phenol content, antioxidant capacity, and flavonoid content, respectively. Principal component analysis showed that traits, namely, total phenol content, leaf length, spikelet/plant, brace root, and seed yield/plant, have significantly contributed to the diversity. In molecular characterization with SSR primers, 62 alleles were generated, with an average of 3.87 alleles per locus. The effective number of alleles detected varied from 1.17 (GBssrJT32) to 4.23 (GBssrJT198). Two alleles were found unique to wild accessions, underscoring the importance of preserving these varieties for future research and breeding. Based on the UPGMA dendrogram, IC416868, IC521338, IC417053, IC419466, IC540173, IC540281, IC89387, IC89393, and JTN3 were identified as diverse accessions. The high level of genetic diversity assessed in this study emphasizes the importance of the Indian NEH region for conserving Job’s tears germplasm. The observed pattern of genetic variations may be used to develop the breeding strategy in Job’s tears.

Item Type: Article
Divisions: Global Research Program - Accelerated Crop Improvement
CRP: UNSPECIFIED
Uncontrolled Keywords: Job’s tears, Genetic diversity, Grain yield, Phenol content, Antioxidant, SSR
Subjects: Others > Crop Yield
Others > Genetics and Genomics
Others > Germplasm
Depositing User: Mr Nagaraju T
Date Deposited: 02 Apr 2025 05:43
Last Modified: 02 Apr 2025 05:43
URI: http://oar.icrisat.org/id/eprint/13019
Official URL: https://link.springer.com/article/10.1007/s11105-0...
Projects: UNSPECIFIED
Funders: College of Postgraduate Studies in Agricultural Sciences and ICAR RC NEH Region, Umiam, Meghalaya
Acknowledgement: The authors would like to express their sincere gratitude to ICAR-Research Complex NEH, Umiam, Meghalaya and the College of Post Graduate Studies in Agricultural Sciences, Umiam, Meghalaya, for providing all the field and laboratory facilities for supporting this research. NBPGR, ICAR, Meghalaya and ICAR, Research Complex for NEH Region, Nagaland Centre is acknowledged for providing the seed materials.
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