Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut

Liu, Y and Shao, L and Zhou, J and Li, R and Pandey, M K and Han, Y and Cui, F and Zhang, J and Guo, F and Chen, J and Shan, S and Fan, G and Zhang, H and Seim, I and Liu, X and Li, X and Varshney, R K and Li, G and Wan, S (2022) Genomic insights into the genetic signatures of selection and seed trait loci in cultivated peanut. Journal of Advanced Research, 42. pp. 237-248. ISSN 2090-1224

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Abstract

Introduction: Cultivated peanut (Arachis hypogaea L.) is an important oil crop for human nutrition and is cultivated in >100 countries. However, the present knowledge of its genomic diversity, evolution, and loci related to the seed traits is limited. Objectives: Our study intended to (1) uncover the population structure and the demographic history of peanuts, (2) identify signatures of selection that occurred during peanut improvement breeding, and (3) detect and verify the functions of candidate genes associated with seed traits. Methods: We explored the population relationship and the evolution of peanuts using a largescale single nucleotide polymorphism dataset generated from the genome-wide resequencing of 203 cultivated peanuts. Genetic diversity and genomic scan analyses were applied to identify selective loci for genomicselection breeding. Genome-wide association studies, transgenic experiments, and RNA-seq were employed to identify the candidate genes associated with seed traits.

Item Type:	Article
Divisions:	Others
CRP:	UNSPECIFIED
Uncontrolled Keywords:	Peanut, Genomic diversity, Evolution, GWAS, Seed traits
Subjects:	Mandate crops > Groundnut Others > Genetics and Genomics
Depositing User:	Mr Nagaraju T
Date Deposited:	12 Jun 2023 05:45
Last Modified:	12 Jun 2023 05:45
URI:	http://oar.icrisat.org/id/eprint/12109
Official URL:	https://www.sciencedirect.com/science/article/pii/...
Projects:	UNSPECIFIED
Funders:	UNSPECIFIED
Acknowledgement:	This work was supported by the Taishan Scholar Program (No. tsqn20161058), the National Natural Science Foundation of China (31871665), the Programs from department of Science and Technology of Shandong Province (YDZX20203700001861, 2019LZGC017, 2020LZGC001) and the Innovation Program of SAAS (CXGC2021A09), and the open fund of Shandong Provincial Key Laboratory of Plant Stress. We would like to thank MJEditor (www.mjeditor.com) for its linguistic assistance during the preparation of this manuscript.
Links:	Google Scholar

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